Population genetic structure and implication for adaptive differentiation of the snail (Gastropoda, Provannidae) in deep‐sea chemosynthetic ecosystems

The snail Provanna glabra is a dominant species inhabiting both hydrothermal vents and cold seeps of the Northwest Pacific Ocean. The genetic diversity and population structure of the snail from the hydrothermal vents of Okinawa Trough and a methane seep in the South China Sea were investigated usin...

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Published inZoologica scripta Vol. 53; no. 2; pp. 192 - 206
Main Authors Zhang, Yu, Cheng, Jiao, Sha, Zhongli, Hui, Min
Format Journal Article
LanguageEnglish
Published Oslo Wiley Subscription Services, Inc 01.03.2024
Subjects
adaptive evolution
Annotations
Biological development
Chemical composition
chemosynthetic ecosystem
Cytochrome-c oxidase
Cytochromes
Data analysis
Differentiation
Dispersal
DNA repair
Dominant species
Ecosystems
gastropod
Gastropoda
Gene sequencing
Genetic diversity
Genetic structure
Genetic variation
Genomes
Hydrothermal springs
Hydrothermal vents
Immunity
Marine molluscs
Methane
Natural selection
Nucleotides
Outliers (statistics)
Phylogenetics
Phylogeny
Population differentiation
Population genetics
Population structure
Populations
Principal components analysis
RAD‐seq
Seepages
Signal transduction
Single-nucleotide polymorphism
Snails
Vents
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Abstract The snail Provanna glabra is a dominant species inhabiting both hydrothermal vents and cold seeps of the Northwest Pacific Ocean. The genetic diversity and population structure of the snail from the hydrothermal vents of Okinawa Trough and a methane seep in the South China Sea were investigated using mitochondrial cytochrome c oxidase subunit I (COI) and genome‐wide single nucleotide polymorphisms (SNPs). A total of 28,805 SNPs were screened based on 2b‐RAD sequencing. Substantial genetic differences between vent and seep populations were identified based on the two datasets with FST = 0.753 (COI) and FST = 0.109 (SNPs), respectively. The results of phylogenetic tree, ADMIXTURE and principal component analysis jointly supported the population differentiation. Outlier detection confirmed the local adaptation of P. glabras populations, and the annotation of these outliers revealed that they were closely associated with processes of signal transduction, immunity, DNA repair, transposable elements and biological development. The genetic divergence observed between hydrothermal vent and methane seep P. glabra populations might be induced by the geographic barrier, limited dispersal ability and natural selection imposed by local environmental pressures from different deep‐sea habitats, e.g. chemical composition, temperature and microbes. These results provide a genetic basis for the microevolution of snails inhabiting deep‐sea chemosynthetic ecosystems.
AbstractList The snail Provanna glabra is a dominant species inhabiting both hydrothermal vents and cold seeps of the Northwest Pacific Ocean. The genetic diversity and population structure of the snail from the hydrothermal vents of Okinawa Trough and a methane seep in the South China Sea were investigated using mitochondrial cytochrome c oxidase subunit I (COI) and genome‐wide single nucleotide polymorphisms (SNPs). A total of 28,805 SNPs were screened based on 2b‐RAD sequencing. Substantial genetic differences between vent and seep populations were identified based on the two datasets with FST = 0.753 (COI) and FST = 0.109 (SNPs), respectively. The results of phylogenetic tree, ADMIXTURE and principal component analysis jointly supported the population differentiation. Outlier detection confirmed the local adaptation of P. glabras populations, and the annotation of these outliers revealed that they were closely associated with processes of signal transduction, immunity, DNA repair, transposable elements and biological development. The genetic divergence observed between hydrothermal vent and methane seep P. glabra populations might be induced by the geographic barrier, limited dispersal ability and natural selection imposed by local environmental pressures from different deep‐sea habitats, e.g. chemical composition, temperature and microbes. These results provide a genetic basis for the microevolution of snails inhabiting deep‐sea chemosynthetic ecosystems.
Abstract The snail Provanna glabra is a dominant species inhabiting both hydrothermal vents and cold seeps of the Northwest Pacific Ocean. The genetic diversity and population structure of the snail from the hydrothermal vents of Okinawa Trough and a methane seep in the South China Sea were investigated using mitochondrial cytochrome c oxidase subunit I (COI) and genome‐wide single nucleotide polymorphisms (SNPs). A total of 28,805 SNPs were screened based on 2b‐RAD sequencing. Substantial genetic differences between vent and seep populations were identified based on the two datasets with F ST  = 0.753 (COI) and F ST  = 0.109 (SNPs), respectively. The results of phylogenetic tree, ADMIXTURE and principal component analysis jointly supported the population differentiation. Outlier detection confirmed the local adaptation of P. glabras populations, and the annotation of these outliers revealed that they were closely associated with processes of signal transduction, immunity, DNA repair, transposable elements and biological development. The genetic divergence observed between hydrothermal vent and methane seep P. glabra populations might be induced by the geographic barrier, limited dispersal ability and natural selection imposed by local environmental pressures from different deep‐sea habitats, e.g. chemical composition, temperature and microbes. These results provide a genetic basis for the microevolution of snails inhabiting deep‐sea chemosynthetic ecosystems.
Author Sha, Zhongli
Hui, Min
Cheng, Jiao
Zhang, Yu
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  surname: Hui
  fullname: Hui, Min
  email: minhui@qdio.ac.cn
  organization: Chinese Academy of Sciences
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  article-title: DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
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Snippet The snail Provanna glabra is a dominant species inhabiting both hydrothermal vents and cold seeps of the Northwest Pacific Ocean. The genetic diversity and...
Abstract The snail Provanna glabra is a dominant species inhabiting both hydrothermal vents and cold seeps of the Northwest Pacific Ocean. The genetic...
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StartPage 192
SubjectTerms adaptive evolution
Annotations
Biological development
Chemical composition
chemosynthetic ecosystem
Cytochrome-c oxidase
Cytochromes
Data analysis
Differentiation
Dispersal
DNA repair
Dominant species
Ecosystems
gastropod
Gastropoda
Gene sequencing
Genetic diversity
Genetic structure
Genetic variation
Genomes
Hydrothermal springs
Hydrothermal vents
Immunity
Marine molluscs
Methane
Natural selection
Nucleotides
Outliers (statistics)
Phylogenetics
Phylogeny
Population differentiation
Population genetics
Population structure
Populations
Principal components analysis
RAD‐seq
Seepages
Signal transduction
Single-nucleotide polymorphism
Snails
Vents
Title Population genetic structure and implication for adaptive differentiation of the snail (Gastropoda, Provannidae) in deep‐sea chemosynthetic ecosystems
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https://www.proquest.com/docview/2922702138
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