The influence of diet on the grass carp intestinal microbiota and bile acids

To elucidate the influence of different diet on the intestinal microbe and bile acids, we characterized the microbiota and bile acids in the hindgut content of grass carp fed on formula feed (FF group) or Sudan grass (SG group). Fusobacteria and Proteobacteria were significantly more represented in...

Full description

Saved in:
Bibliographic Details
Published inAquaculture research Vol. 48; no. 9; pp. 4934 - 4944
Main Authors Zhang, Jing, Xiong, Fan, Wang, Gui‐Tang, Li, Wen‐Xiang, Li, Ming, Zou, Hong, Wu, Shan‐Gong
Format Journal Article
LanguageEnglish
Published Oxford Hindawi Limited 01.09.2017
Subjects
Online AccessGet full text

Cover

Loading…
Abstract To elucidate the influence of different diet on the intestinal microbe and bile acids, we characterized the microbiota and bile acids in the hindgut content of grass carp fed on formula feed (FF group) or Sudan grass (SG group). Fusobacteria and Proteobacteria were significantly more represented in FF group than in SG group whereas Bacteroidetes was significantly more abundant in SG group than in FF group. Simpson diversity was significantly higher in FF group than in SG group (t = 2.33, P < 0.05). Chenodeoxycholic acid (CDCA) was the most abundant primary bile acid in the two groups, with average concentrations of 1.03 ± 0.62 and 4.44 ± 1.80 ng mg−1 in SG and FF group respectively. The most abundant secondary bile acid was deoxycholic acid (DCA) in SG group and ursodeoxycholic acid (UDCA) in FF group, with average concentrations of 0.17 ± 0.06 and 2.67 ± 0.88 ng mg−1 respectively. UDCA is significantly more abundant in FF group than in SG group, and the total bile acids were higher in FF group than in SG group. Cetobacterium and Fusobacteriaceae U114 were significantly related with the concentrations of CDCA (r = 0.85, P < 0.05 and r = 0.82, P < 0.05 respectively) and UDCA (r = 0.92, P < 0.01 and r = 0.92, P < 0.01 respectively). However, Bacteroides was negatively related with the concentration of UDCA (r = −0.67, P < 0.05). Overall, there existed certain relationship between the intestinal microbes and the faecal bile acids, and they were both influenced by the diet.
AbstractList To elucidate the influence of different diet on the intestinal microbe and bile acids, we characterized the microbiota and bile acids in the hindgut content of grass carp fed on formula feed (FF group) or Sudan grass (SG group). Fusobacteria and Proteobacteria were significantly more represented in FF group than in SG group whereas Bacteroidetes was significantly more abundant in SG group than in FF group. Simpson diversity was significantly higher in FF group than in SG group (t = 2.33, P < 0.05). Chenodeoxycholic acid (CDCA) was the most abundant primary bile acid in the two groups, with average concentrations of 1.03 ± 0.62 and 4.44 ± 1.80 ng mg-1 in SG and FF group respectively. The most abundant secondary bile acid was deoxycholic acid (DCA) in SG group and ursodeoxycholic acid (UDCA) in FF group, with average concentrations of 0.17 ± 0.06 and 2.67 ± 0.88 ng mg-1 respectively. UDCA is significantly more abundant in FF group than in SG group, and the total bile acids were higher in FF group than in SG group. Cetobacterium and Fusobacteriaceae U114 were significantly related with the concentrations of CDCA (r = 0.85, P < 0.05 and r = 0.82, P < 0.05 respectively) and UDCA (r = 0.92, P < 0.01 and r = 0.92, P < 0.01 respectively). However, Bacteroides was negatively related with the concentration of UDCA (r = -0.67, P < 0.05). Overall, there existed certain relationship between the intestinal microbes and the faecal bile acids, and they were both influenced by the diet.
To elucidate the influence of different diet on the intestinal microbe and bile acids, we characterized the microbiota and bile acids in the hindgut content of grass carp fed on formula feed (FF group) or Sudan grass (SG group). Fusobacteria and Proteobacteria were significantly more represented in FF group than in SG group whereas Bacteroidetes was significantly more abundant in SG group than in FF group. Simpson diversity was significantly higher in FF group than in SG group (t = 2.33, P < 0.05). Chenodeoxycholic acid (CDCA) was the most abundant primary bile acid in the two groups, with average concentrations of 1.03 ± 0.62 and 4.44 ± 1.80 ng mg−1 in SG and FF group respectively. The most abundant secondary bile acid was deoxycholic acid (DCA) in SG group and ursodeoxycholic acid (UDCA) in FF group, with average concentrations of 0.17 ± 0.06 and 2.67 ± 0.88 ng mg−1 respectively. UDCA is significantly more abundant in FF group than in SG group, and the total bile acids were higher in FF group than in SG group. Cetobacterium and Fusobacteriaceae U114 were significantly related with the concentrations of CDCA (r = 0.85, P < 0.05 and r = 0.82, P < 0.05 respectively) and UDCA (r = 0.92, P < 0.01 and r = 0.92, P < 0.01 respectively). However, Bacteroides was negatively related with the concentration of UDCA (r = −0.67, P < 0.05). Overall, there existed certain relationship between the intestinal microbes and the faecal bile acids, and they were both influenced by the diet.
Author Zhang, Jing
Zou, Hong
Li, Ming
Xiong, Fan
Li, Wen‐Xiang
Wu, Shan‐Gong
Wang, Gui‐Tang
Author_xml – sequence: 1
  givenname: Jing
  surname: Zhang
  fullname: Zhang, Jing
  organization: University of Chinese Academy of Sciences
– sequence: 2
  givenname: Fan
  surname: Xiong
  fullname: Xiong, Fan
  organization: University of Chinese Academy of Sciences
– sequence: 3
  givenname: Gui‐Tang
  surname: Wang
  fullname: Wang, Gui‐Tang
  organization: University of Chinese Academy of Sciences
– sequence: 4
  givenname: Wen‐Xiang
  surname: Li
  fullname: Li, Wen‐Xiang
  organization: University of Chinese Academy of Sciences
– sequence: 5
  givenname: Ming
  surname: Li
  fullname: Li, Ming
  organization: University of Chinese Academy of Sciences
– sequence: 6
  givenname: Hong
  surname: Zou
  fullname: Zou, Hong
  organization: Chinese Academy of Sciences
– sequence: 7
  givenname: Shan‐Gong
  orcidid: 0000-0002-2115-2121
  surname: Wu
  fullname: Wu, Shan‐Gong
  email: wusgz@ihb.ac.cn
  organization: Freshwater Aquaculture Collaborative Innovation Center of Hubei Province
BookMark eNp1kE9LAzEQxYNUsK0e_AYBTx623Ww2u5tjKfUPFASp4C0k2YmmbJOa7CL99qauV-cyD-Y3w5s3QxPnHSB0S_IFSbWUARaEUlJcoCmhFcsKkvPJWTOWMVa_X6FZjPs8J2VOyRRtd5-ArTPdAE4D9ga3FnrsHe7T4CPIGLGW4ZiYHmJvnezwwerglfW9xNK1WNkOsNS2jdfo0sguws1fn6O3h81u_ZRtXx6f16ttpiktiow2mpWUcVWDrrVuy7KmHDivDCiZdKsaU5ui5IZUAI0ylTaVUQqA56yRJZ2ju_HuMfivIdkSez-EZC0KwouqYXVTsETdj1RyG2MAI47BHmQ4CZKLc1gihSV-w0rscmS_0zOn_0Gxet2MGz_chG0A
CitedBy_id crossref_primary_10_1016_j_fsi_2019_08_059
crossref_primary_10_1007_s10695_021_01028_2
crossref_primary_10_1016_j_aaf_2021_05_005
crossref_primary_10_1186_s13568_019_0770_0
crossref_primary_10_1016_j_aquaculture_2017_12_014
crossref_primary_10_1016_j_aquaculture_2021_737012
crossref_primary_10_1186_s13071_019_3510_z
crossref_primary_10_1016_j_envpol_2019_113846
crossref_primary_10_1111_are_15607
crossref_primary_10_1016_j_aqrep_2023_101510
crossref_primary_10_3389_fmicb_2018_02209
crossref_primary_10_1016_j_ecoenv_2024_116326
crossref_primary_10_1111_raq_12819
crossref_primary_10_3390_microorganisms9040808
crossref_primary_10_1007_s10695_024_01369_8
crossref_primary_10_1016_j_aquaculture_2022_738852
crossref_primary_10_1016_j_aquaculture_2018_08_062
crossref_primary_10_1016_j_jhazmat_2022_129817
crossref_primary_10_3390_metabo12111115
crossref_primary_10_1016_j_jhazmat_2023_133267
crossref_primary_10_1016_j_aquaculture_2019_02_011
crossref_primary_10_1111_raq_12410
crossref_primary_10_1016_j_aqrep_2023_101848
crossref_primary_10_3389_fmicb_2022_824611
crossref_primary_10_1016_j_aquaculture_2022_739160
crossref_primary_10_1016_j_aquaculture_2019_734606
Cites_doi 10.1038/ncomms3163
10.1097/MOG.0000000000000057
10.3147/jsfp.48.88
10.1053/j.gastro.2011.07.046
10.1073/pnas.1005963107
10.1501/Vetfak_0000002448
10.1073/pnas.1007028107
10.1093/bioinformatics/btr507
10.1016/j.aquaculture.2013.12.032
10.1111/j.1365-2109.2010.02543.x
10.1111/are.12391
10.1038/nrmicro1817
10.1177/1535370214538743
10.1038/srep24340
10.1016/j.bbagrm.2014.05.021
10.1186/gb-2011-12-6-r60
10.1016/j.biochi.2012.06.022
10.1111/mec.13050
10.1016/j.jhep.2015.08.001
10.1016/j.cmet.2013.01.003
10.1371/journal.pone.0025263
10.1016/j.femsre.2004.09.003
10.1074/jbc.M305079200
10.1128/AEM.71.12.8228-8235.2005
10.1016/0016-5085(92)91704-8
10.1073/pnas.0600780103
10.1002/hep.20897
10.1017/S0007114512002024
10.1111/are.13080
10.1007/s00248-009-9506-z
10.1016/j.jhep.2013.01.003
10.1073/pnas.1006734107
10.1172/JCI21025
10.1111/j.1574-6941.2011.01155.x
10.3389/fmicb.2016.00758
10.1111/j.1365-2109.2010.02546.x
10.1186/2191-0855-1-41
10.1194/jlr.M002774
10.1016/j.fsi.2015.03.043
10.1053/j.gastro.2014.01.020
10.1126/science.1223813
10.1194/jlr.R500013-JLR200
10.1093/femsec/fiv107
10.1001/archinte.159.22.2647
10.1016/j.cell.2012.04.037
10.1007/s00248-014-0480-8
10.1093/jn/124.8.1161
10.1099/00221287-146-6-1391
10.1111/jam.12475
10.1126/scitranslmed.3000322
10.1038/nature04330
10.1038/ismej.2011.38
10.1371/journal.pone.0030440
10.1016/j.celrep.2016.01.026
10.1111/1574-6941.12256
10.1007/978-1-61737-985-7_6
10.1111/j.1365-2222.2006.02579.x
10.1093/ajcn/32.10.2094
10.1038/nature11550
10.1126/science.1058830
ContentType Journal Article
Copyright 2017 John Wiley & Sons Ltd
Copyright © 2017 John Wiley & Sons Ltd
Copyright_xml – notice: 2017 John Wiley & Sons Ltd
– notice: Copyright © 2017 John Wiley & Sons Ltd
DBID AAYXX
CITATION
7TN
7U7
8FD
C1K
F1W
FR3
H95
H98
H99
L.F
L.G
M7N
P64
RC3
DOI 10.1111/are.13312
DatabaseName CrossRef
Oceanic Abstracts
Toxicology Abstracts
Technology Research Database
Environmental Sciences and Pollution Management
ASFA: Aquatic Sciences and Fisheries Abstracts
Engineering Research Database
Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources
Aquatic Science & Fisheries Abstracts (ASFA) Aquaculture Abstracts
ASFA: Marine Biotechnology Abstracts
Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts
Aquatic Science & Fisheries Abstracts (ASFA) Professional
Algology Mycology and Protozoology Abstracts (Microbiology C)
Biotechnology and BioEngineering Abstracts
Genetics Abstracts
DatabaseTitle CrossRef
Aquatic Science & Fisheries Abstracts (ASFA) Professional
Technology Research Database
Toxicology Abstracts
Biotechnology and BioEngineering Abstracts
Environmental Sciences and Pollution Management
Genetics Abstracts
Aquatic Science & Fisheries Abstracts (ASFA) Aquaculture Abstracts
Oceanic Abstracts
Algology Mycology and Protozoology Abstracts (Microbiology C)
ASFA: Aquatic Sciences and Fisheries Abstracts
Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts
Engineering Research Database
Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources
DatabaseTitleList Aquatic Science & Fisheries Abstracts (ASFA) Professional

DeliveryMethod fulltext_linktorsrc
Discipline Agriculture
EISSN 1365-2109
EndPage 4944
ExternalDocumentID 10_1111_are_13312
ARE13312
Genre article
GrantInformation_xml – fundername: National Natural Science Foundation of China
  funderid: No. 31272706; No. 31372571
– fundername: Construction of Modern Agricultural Industry Technology System
  funderid: CARS‐46‐08
GroupedDBID .3N
.GA
.Y3
05W
0R~
10A
1OB
1OC
23M
24P
31~
33P
3SF
4.4
50Y
50Z
51W
51X
52M
52N
52O
52P
52S
52T
52U
52W
52X
5GY
5HH
5LA
5VS
66C
702
7PT
8-0
8-1
8-3
8-4
8-5
8UM
930
A03
AAESR
AAEVG
AAHBH
AAHHS
AAJEY
AAONW
AASGY
AAXRX
AAZKR
ABCQN
ABCUV
ABEML
ABJNI
ABPVW
ACAHQ
ACBWZ
ACCFJ
ACCZN
ACGFS
ACPOU
ACPRK
ACSCC
ACXBN
ACXQS
ADBBV
ADEOM
ADIZJ
ADKYN
ADMGS
ADOZA
ADXAS
ADZMN
ADZOD
AEEZP
AEIMD
AENEX
AEQDE
AEUQT
AFBPY
AFEBI
AFGKR
AFKRA
AFPWT
AFRAH
AFZJQ
AHEFC
AI.
AIURR
AIWBW
AJBDE
AJXKR
ALAGY
ALMA_UNASSIGNED_HOLDINGS
ALUQN
AMBMR
AMYDB
ATUGU
AUFTA
AZBYB
AZFZN
AZVAB
BAFTC
BDRZF
BENPR
BFHJK
BGJEQ
BHBCM
BHPHI
BKSAR
BMNLL
BMXJE
BNHUX
BROTX
BRXPI
BY8
CAG
CCPQU
COF
CS3
D-E
D-F
DCZOG
DPXWK
DR2
DRFUL
DRSTM
EBS
ECGQY
EJD
ESX
F00
F01
F04
FEDTE
FZ0
G-S
G.N
GODZA
GROUPED_DOAJ
H.T
H.X
H13
HCIFZ
HF~
HVGLF
HZI
HZ~
IAG
IAO
IEP
IHE
IX1
J0M
K48
LATKE
LC2
LC3
LEEKS
LH4
LITHE
LOXES
LP6
LP7
LUTES
LW6
LYRES
MK4
MRFUL
MRSTM
MSFUL
MSSTM
MXFUL
MXSTM
N04
N05
N9A
NF~
O66
O9-
OIG
P2P
P2W
P2X
P4D
PALCI
PCBAR
PIMPY
Q.N
Q11
QB0
R.K
RHX
RIWAO
RJQFR
ROL
RX1
SAMSI
SUPJJ
UB1
VH1
W8V
W99
WBKPD
WH7
WIH
WIK
WOHZO
WQJ
WRC
WUPDE
WXSBR
WYISQ
XG1
ZZTAW
~IA
~KM
~WT
AAYXX
CITATION
ITC
7TN
7U7
8FD
C1K
F1W
FR3
H95
H98
H99
L.F
L.G
M7N
P64
RC3
ID FETCH-LOGICAL-c3322-38c54359b7ec7ccd44739e996feba473db8f7f249f16ee8bf6cf6fbbee9058a43
IEDL.DBID DR2
ISSN 1355-557X
IngestDate Thu Oct 10 18:13:38 EDT 2024
Thu Sep 26 19:07:14 EDT 2024
Sat Aug 24 01:11:53 EDT 2024
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 9
Language English
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c3322-38c54359b7ec7ccd44739e996feba473db8f7f249f16ee8bf6cf6fbbee9058a43
ORCID 0000-0002-2115-2121
OpenAccessLink https://doi.org/10.1111/are.13312
PQID 1926857825
PQPubID 1026362
PageCount 11
ParticipantIDs proquest_journals_1926857825
crossref_primary_10_1111_are_13312
wiley_primary_10_1111_are_13312_ARE13312
PublicationCentury 2000
PublicationDate September 2017
2017-09-00
20170901
PublicationDateYYYYMMDD 2017-09-01
PublicationDate_xml – month: 09
  year: 2017
  text: September 2017
PublicationDecade 2010
PublicationPlace Oxford
PublicationPlace_xml – name: Oxford
PublicationTitle Aquaculture research
PublicationYear 2017
Publisher Hindawi Limited
Publisher_xml – name: Hindawi Limited
References 2013; 4
2010; 107
2006; 36
2014; 69
2008; 6
2011; 12
2011; 58
2012; 489
2003; 278
1981; 41
2005; 29
1979; 32
2015; 46
2015; 45
2009; 58
2013; 58
2013; 17
2001; 292
2013; 95
2005; 71
2015; 91
2011; 27
2012; 336
2014; 239
2014; 116
2013; 48
2006; 439
2011; 1
2013; 109
2011
1992; 102
2005; 42
2011; 78
2012; 149
2011; 6
1995; 272
2011; 5
2010; 41
2016; 14
2014; 87
1999
2015; 24
1994; 124
2014; 424
2016; 6
2010; 42
2011; 108
2004; 113
2000; 146
2015; 1849
2015; 63
2006; 47
2008; 46
2016
2011; 141
2014; 30
2012; 7
1999; 159
2009; 1
2009; 37
2010; 51
2006; 103
2014; 146
Fan (10.1111/are.13312-BIB0014|are13312-cit-0014) 2015; 1849
Lyons (10.1111/are.13312-BIB0032|are13312-cit-0032) 2016
Segata (10.1111/are.13312-BIB0048|are13312-cit-0048) 2011; 12
Watanabe (10.1111/are.13312-BIB0058|are13312-cit-0058) 2006; 439
Kortner (10.1111/are.13312-BIB0023|are13312-cit-0023) 2013; 109
Flint (10.1111/are.13312-BIB0015|are13312-cit-0015) 2008; 6
Wu (10.1111/are.13312-BIB0059|are13312-cit-0059) 2012; 7
Sayin (10.1111/are.13312-BIB0046|are13312-cit-0046) 2013; 17
Swann (10.1111/are.13312-BIB0050|are13312-cit-0050) 2011; 108
Larsen (10.1111/are.13312-BIB0024|are13312-cit-0024) 2014; 116
Tsuchiya (10.1111/are.13312-BIB0052|are13312-cit-0052) 2008; 46
Tsuei (10.1111/are.13312-BIB0053|are13312-cit-0053) 2014; 239
Kessel (10.1111/are.13312-BIB0055|are13312-cit-0055) 2011; 1
China (10.1111/are.13312-BIB0007|are13312-cit-0007) 2013; 48
Li (10.1111/are.13312-BIB0027|are13312-cit-0027) 2016
Ni (10.1111/are.13312-BIB0038|are13312-cit-0038) 2014; 87
Magoč (10.1111/are.13312-BIB0033|are13312-cit-0033) 2011; 27
Reddy (10.1111/are.13312-BIB0041|are13312-cit-0041) 1981; 41
Watanabe (10.1111/are.13312-BIB0057|are13312-cit-0057) 2004; 113
Miyake (10.1111/are.13312-BIB0035|are13312-cit-0035) 2015; 24
Chung (10.1111/are.13312-BIB0008|are13312-cit-0008) 2012; 149
Han (10.1111/are.13312-BIB0017|are13312-cit-0017) 2010; 42
Fabiani (10.1111/are.13312-BIB0011|are13312-cit-0011) 2003; 278
Roeselers (10.1111/are.13312-BIB0044|are13312-cit-0044) 2011; 5
Begley (10.1111/are.13312-BIB0003|are13312-cit-0003) 2005; 29
Velagapudi (10.1111/are.13312-BIB0056|are13312-cit-0056) 2010; 51
Combes (10.1111/are.13312-BIB0009|are13312-cit-0009) 2005; 42
Nayak (10.1111/are.13312-BIB0036|are13312-cit-0036) 2010; 41
Bjorksten (10.1111/are.13312-BIB0005|are13312-cit-0005) 2006; 36
Aurilia (10.1111/are.13312-BIB0001|are13312-cit-0001) 2000; 146
Li (10.1111/are.13312-BIB0025|are13312-cit-0025) 2014; 69
Liu (10.1111/are.13312-BIB0030|are13312-cit-0030) 2016; 6
Cummings (10.1111/are.13312-BIB0010|are13312-cit-0010) 1979; 32
Ni (10.1111/are.13312-BIB0037|are13312-cit-0037) 1999
Tamaki (10.1111/are.13312-BIB0051|are13312-cit-0051) 2011; 6
Russell (10.1111/are.13312-BIB0045|are13312-cit-0045) 2001; 292
Filippo (10.1111/are.13312-BIB0012|are13312-cit-0012) 2010; 107
Hofmann (10.1111/are.13312-BIB0018|are13312-cit-0018) 1999; 159
Turnbaugh (10.1111/are.13312-BIB0054|are13312-cit-0054) 2009; 1
Schnabl (10.1111/are.13312-BIB0047|are13312-cit-0047) 2014; 146
Botla (10.1111/are.13312-BIB0006|are13312-cit-0006) 1995; 272
Wu (10.1111/are.13312-BIB0060|are13312-cit-0060) 2015; 91
Liu (10.1111/are.13312-BIB0029|are13312-cit-0029) 2015; 45
Reddy (10.1111/are.13312-BIB0042|are13312-cit-0042) 1992; 102
Ingerslev (10.1111/are.13312-BIB0020|are13312-cit-0020) 2014; 424
Zhou (10.1111/are.13312-BIB0063|are13312-cit-0063) 2009; 58
Lozupone (10.1111/are.13312-BIB0031|are13312-cit-0031) 2005; 71
Matheson (10.1111/are.13312-BIB0034|are13312-cit-0034) 1994; 124
Liu (10.1111/are.13312-BIB0028|are13312-cit-0028) 2015; 63
Sommer (10.1111/are.13312-BIB0049|are13312-cit-0049) 2016; 14
Baptissart (10.1111/are.13312-BIB0002|are13312-cit-0002) 2013; 95
Islam (10.1111/are.13312-BIB0021|are13312-cit-0021) 2011; 141
Zhang (10.1111/are.13312-BIB0062|are13312-cit-0062) 2013; 4
Ridlon (10.1111/are.13312-BIB0043|are13312-cit-0043) 2014; 30
Yardimci (10.1111/are.13312-BIB0061|are13312-cit-0061) 2011; 58
Lozupone (10.1111/are.13312-BIB0132|are13312-cit-0132) 2012; 489
Qian (10.1111/are.13312-BIB0040|are13312-cit-0040) 2009; 37
Ridlon (10.1111/are.13312-BIB0143|are13312-cit-0143) 2006; 47
Hofmann (10.1111/are.13312-BIB0019|are13312-cit-0019) 2006; 103
Benson (10.1111/are.13312-BIB0004|are13312-cit-0004) 2010; 107
Nicholson (10.1111/are.13312-BIB0039|are13312-cit-0039) 2012; 336
Paula Silva (10.1111/are.13312-BIB0013|are13312-cit-0013) 2011; 78
Kakiyama (10.1111/are.13312-BIB0022|are13312-cit-0022) 2013; 58
Hagio (10.1111/are.13312-BIB0016|are13312-cit-0016) 2011
Li (10.1111/are.13312-BIB0026|are13312-cit-0026) 2015; 46
References_xml – volume: 141
  start-page: 1773
  year: 2011
  end-page: 1781
  article-title: Bile acid is a host factor that regulates the composition of the cecal microbiota in rats
  publication-title: Gastroenterology
– volume: 48
  start-page: 88
  year: 2013
  end-page: 96
  article-title: Occurrence of the myxosporean emaciation disease caused by in cultured Malabar grouper
  publication-title: Fish Pathology
– volume: 292
  start-page: 1119
  year: 2001
  end-page: 1122
  article-title: Factors that alter rumen microbial ecology
  publication-title: Science
– volume: 102
  start-page: 1475
  year: 1992
  end-page: 1482
  article-title: Effect of dietary fiber on colonic bacterial enzymes and bile acids in relation to colon cancer
  publication-title: Gastroenterology
– volume: 95
  start-page: 504
  year: 2013
  end-page: 517
  article-title: Bile acids: from digestion to cancers
  publication-title: Biochimie
– volume: 489
  start-page: 220
  year: 2012
  end-page: 230
  article-title: Diversity, stability and resilience of the human gut microbiota
  publication-title: Nature
– volume: 87
  start-page: 704
  year: 2014
  end-page: 714
  article-title: Factors influencing the grass carp gut microbiome and its effect on metabolism
  publication-title: FEMS Microbiology Ecology
– volume: 159
  start-page: 2647
  year: 1999
  end-page: 2658
  article-title: The continuing importance of bile acids in liver and intestinal disease
  publication-title: Archives of Internal Medicine
– volume: 6
  start-page: e25263
  year: 2011
  article-title: Analysis of 16S rRNA amplicon sequencing options on the roche/454 next‐generation titanium sequencing platform
  publication-title: PLoS ONE
– volume: 24
  start-page: 656
  year: 2015
  end-page: 672
  article-title: Diet strongly influences the gut microbiota of surgeonfishes
  publication-title: Molecular Ecology
– volume: 47
  start-page: 241
  year: 2006
  end-page: 259
  article-title: Bile salt biotransformations by human intestinal bacteria
  publication-title: Journal of Lipid Research
– volume: 109
  start-page: 593
  year: 2013
  end-page: 604
  article-title: Transcriptional regulation of cholesterol and bile acid metabolism after dietary soyabean meal treatment in Atlantic salmon ( L.)
  publication-title: British Journal of Nutrition
– volume: 146
  start-page: 1391
  year: 2000
  end-page: 1397
  article-title: Three multidomain esterases from the cellulolytic rumen anaerobe 17 that carry divergent dockerin sequences
  publication-title: Microbiology
– volume: 42
  start-page: 47
  year: 2010
  end-page: 56
  article-title: Analysis of bacterial diversity in the intestine of grass carp ( ) based on 16S rDNA gene sequences
  publication-title: Aquaculture Research
– year: 2016
  article-title: Effects of low‐level dietary microalgae supplementation on the distal intestinal microbiome of farmed rainbow trout (Walbaum)
  publication-title: Aquaculture Research
– start-page: 119
  year: 2011
  end-page: 129
– volume: 103
  start-page: 4333
  year: 2006
  end-page: 4334
  article-title: How bile acids confer gut mucosal protection against bacteria
  publication-title: Proceedings of the National Academy of Sciences of the United States of America
– volume: 6
  start-page: 24340
  year: 2016
  article-title: The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels
  publication-title: Scientific Reports
– volume: 424
  start-page: 24
  year: 2014
  end-page: 34
  article-title: The development of the gut microbiota in rainbow trout ( ) is affected by first feeding and diet type
  publication-title: Aquaculture
– volume: 272
  start-page: 930
  year: 1995
  end-page: 938
  article-title: Ursodeoxycholate (Udca) inhibits the mitochondrial‐membrane permeability transition induced by glycochenodeoxycholate – a mechanism of udca cytoprotection
  publication-title: Journal of Pharmacology and Experimental Therapeutics
– volume: 27
  start-page: 2957
  year: 2011
  end-page: 2963
  article-title: FLASH: fast length adjustment of short reads to improve genome assemblies
  publication-title: Bioinformatics
– volume: 439
  start-page: 484
  year: 2006
  end-page: 489
  article-title: Bile acids induce energy expenditure by promoting intracellular thyroid hormone activation
  publication-title: Nature
– volume: 278
  start-page: 39124
  year: 2003
  end-page: 39132
  article-title: Coordinated control of cholesterol catabolism to bile acids and of gluconeogenesis via a novel mechanism of transcription regulation linked to the fasted‐to‐fed cycle
  publication-title: Journal of Biological Chemistry
– volume: 6
  start-page: 121
  year: 2008
  end-page: 131
  article-title: Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
  publication-title: Nature Reviews Microbiology
– volume: 116
  start-page: 1396
  year: 2014
  end-page: 1404
  article-title: Characterization of the gut microbiota of three commercially valuable warmwater fish species
  publication-title: Journal of Applied Microbiology
– volume: 7
  start-page: e30440
  year: 2012
  article-title: Composition, diversity, and origin of the bacterial community in grass carp intestine
  publication-title: PLoS ONE
– volume: 58
  start-page: 582
  year: 2009
  end-page: 590
  article-title: Diversity of both the cultivable protease‐producing bacteria and their extracellular proteases in the sediments of the south China Sea
  publication-title: Microbial Ecology
– volume: 1
  start-page: 41
  year: 2011
  end-page: 49
  article-title: Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp ( L.)
  publication-title: AMB Express
– volume: 42
  start-page: 1184
  year: 2005
  end-page: 1193
  article-title: Methotrexate (MTX) plus ursodeoxycholic acid (UDCA) in the treatment of primary biliary cirrhosis
  publication-title: Hepatology
– year: 2016
  article-title: Pika population density is associated with the composition and diversity of gut microbiota
  publication-title: Frontiers in Microbiology
– volume: 149
  start-page: 1578
  year: 2012
  end-page: 1593
  article-title: Gut immune maturation depends on colonization with a host‐specific microbiota
  publication-title: Cell
– volume: 14
  start-page: 1655
  year: 2016
  end-page: 1661
  article-title: The gut microbiota modulates energy metabolism in the hibernating brown bear ursus arctos
  publication-title: Cell Reports
– volume: 45
  start-page: 175
  year: 2015
  end-page: 183
  article-title: Effect of a new recombinant vaccine on the grass carp intestinal microbiota and correlations with immunological responses
  publication-title: Fish & Shellfish Immunology
– volume: 91
  year: 2015
  article-title: Metatranscriptomic discovery of plant biomass‐degrading capacity from grass carp intestinal microbiomes
  publication-title: FEMS Microbiology Ecology
– volume: 5
  start-page: 1595
  year: 2011
  end-page: 1608
  article-title: Evidence for a core gut microbiota in the zebrafish
  publication-title: ISME Journal
– volume: 107
  start-page: 14691
  year: 2010
  end-page: 14696
  article-title: Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
  publication-title: Proceedings of the National Academy of Sciences of the United States of America
– volume: 1
  year: 2009
  article-title: The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
  publication-title: Science Translational Medicine
– volume: 78
  start-page: 285
  year: 2011
  end-page: 296
  article-title: Influence of the diet on the microbial diversity of faecal and gastrointestinal contents in gilthead sea bream ( ) and intestinal contents in goldfish ( )
  publication-title: FEMS Microbiology Ecology
– volume: 58
  start-page: 47
  year: 2011
  end-page: 54
  article-title: Pathological findings of experimental infection in Nile tilapia ( )
  publication-title: Ankara Univ Vet Fak Derg
– volume: 30
  start-page: 332
  year: 2014
  end-page: 338
  article-title: Bile acids and the gut microbiome
  publication-title: Current Opinion in Gastroenterology
– volume: 29
  start-page: 625
  year: 2005
  end-page: 651
  article-title: The interaction between bacteria and bile
  publication-title: FEMS Microbiology Reviews
– volume: 69
  start-page: 25
  year: 2014
  end-page: 36
  article-title: Comparative analysis of the intestinal bacterial communities in different species of carp by pyrosequencing
  publication-title: Microbial Ecology
– volume: 71
  start-page: 8228
  year: 2005
  end-page: 8235
  article-title: UniFrac: a new phylogenetic method for comparing microbial communities
  publication-title: Applied and Environmental Microbiology
– volume: 36
  start-page: 1215
  year: 2006
  end-page: 1217
  article-title: The gut microbiota: a complex ecosystem
  publication-title: Clinical and Experimental Allergy
– volume: 46
  start-page: 43
  year: 2008
  end-page: 48
  article-title: Novel ecological niche of , an anaerobic bacterium in the intestinal tracts of freshwater fish
  publication-title: Letters in Applied Microbiology
– volume: 37
  start-page: 6463
  year: 2009
  end-page: 6467
  article-title: Changes of biochemical characteristics and organization structure in liver of grass carp ( ) with hepatobiliary syndrome
  publication-title: Journal of Anhui Agricultural Sciences
– volume: 1849
  start-page: 196
  year: 2015
  end-page: 200
  article-title: Bile acid signaling and liver regeneration
  publication-title: Biochimica Et Biophysica Acta‐Gene Regulatory Mechanisms
– volume: 146
  start-page: 1513
  year: 2014
  end-page: 1524
  article-title: Interactions between the intestinal microbiome and liver diseases
  publication-title: Gastroenterology
– volume: 41
  start-page: 3766
  year: 1981
  end-page: 3768
  article-title: Diet and excretion of bile acids
  publication-title: Cancer Research
– volume: 336
  start-page: 1262
  year: 2012
  end-page: 1267
  article-title: Host‐gut microbiota metabolic interactions
  publication-title: Science
– volume: 32
  start-page: 2094
  year: 1979
  end-page: 2101
  article-title: The effect of meat protein and dietary fiber on colonic function and metabolism; I. Changes in bowel habit, bile acid excretion, and calcium absorption
  publication-title: American Journal of Clinical Nutrition
– volume: 41
  start-page: 1553
  year: 2010
  end-page: 1573
  article-title: Role of gastrointestinal microbiota in fish
  publication-title: Aquaculture Research
– volume: 63
  start-page: 1502
  year: 2015
  end-page: 1510
  article-title: Implications of microbiota and bile acid in liver injury and regeneration
  publication-title: Journal of Hepatology
– volume: 12
  start-page: R60
  year: 2011
  article-title: Metagenomic biomarker discovery and explanation
  publication-title: Genome Biology
– volume: 124
  start-page: 1161
  year: 1994
  end-page: 1165
  article-title: Dietary psyllium hydrocolloid and pectin increase bile acid pool size and change bile acid composition in rats
  publication-title: The Journal of Nutrition
– volume: 51
  start-page: 1101
  year: 2010
  end-page: 1112
  article-title: The gut microbiota modulates host energy and lipid metabolism in mice
  publication-title: Journal of Lipid Research
– volume: 113
  start-page: 1408
  year: 2004
  end-page: 1418
  article-title: Bile acids lower triglyceride levels via a pathway involving FXR, SHP, and SREBP‐1c
  publication-title: Journal of Clinical Investigation
– volume: 58
  start-page: 949
  year: 2013
  end-page: 955
  article-title: Modulation of the fecal bile acid profile by gut microbiota in cirrhosis
  publication-title: Journal of Hepatology
– volume: 108
  start-page: 4523
  year: 2011
  end-page: 4530
  article-title: Systemic gut microbial modulation of bile acid metabolism in host tissue compartments
  publication-title: Proceedings of the National Academy of Sciences of the United States of America
– volume: 46
  start-page: 2344
  year: 2015
  end-page: 2359
  article-title: Diversity of autochthonous bacterial communities in the intestinal mucosa of grass carp ( ) (Valenciennes) determined by culture‐dependent and culture‐independent techniques
  publication-title: Aquaculture Research
– volume: 239
  start-page: 1489
  year: 2014
  end-page: 1504
  article-title: Bile acid dysregulation, gut dysbiosis, and gastrointestinal cancer
  publication-title: Experimental Biology and Medicine
– volume: 4
  start-page: 2163
  year: 2013
  article-title: Structural modulation of gut microbiota in life‐long calorie‐restricted mice
  publication-title: Nature Communications
– volume: 107
  start-page: 18933
  year: 2010
  end-page: 18938
  article-title: Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
  publication-title: Proceedings of the National Academy of Sciences of the United States of America
– year: 1999
– volume: 17
  start-page: 225
  year: 2013
  end-page: 235
  article-title: Gut microbiota regulates bile acid metabolism by reducing the levels of tauro‐beta‐muricholic acid, a naturally occurring FXR antagonist
  publication-title: Cell Metabolism
– volume: 4
  start-page: 2163
  year: 2013
  ident: 10.1111/are.13312-BIB0062|are13312-cit-0062
  article-title: Structural modulation of gut microbiota in life-long calorie-restricted mice
  publication-title: Nature Communications
  doi: 10.1038/ncomms3163
  contributor:
    fullname: Zhang
– volume: 30
  start-page: 332
  year: 2014
  ident: 10.1111/are.13312-BIB0043|are13312-cit-0043
  article-title: Bile acids and the gut microbiome
  publication-title: Current Opinion in Gastroenterology
  doi: 10.1097/MOG.0000000000000057
  contributor:
    fullname: Ridlon
– volume: 48
  start-page: 88
  year: 2013
  ident: 10.1111/are.13312-BIB0007|are13312-cit-0007
  article-title: Occurrence of the myxosporean emaciation disease caused by Enteromyxum leei in cultured Malabar grouper Epinephelus malabaricus
  publication-title: Fish Pathology
  doi: 10.3147/jsfp.48.88
  contributor:
    fullname: China
– volume: 141
  start-page: 1773
  year: 2011
  ident: 10.1111/are.13312-BIB0021|are13312-cit-0021
  article-title: Bile acid is a host factor that regulates the composition of the cecal microbiota in rats
  publication-title: Gastroenterology
  doi: 10.1053/j.gastro.2011.07.046
  contributor:
    fullname: Islam
– volume: 107
  start-page: 14691
  year: 2010
  ident: 10.1111/are.13312-BIB0012|are13312-cit-0012
  article-title: Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
  publication-title: Proceedings of the National Academy of Sciences of the United States of America
  doi: 10.1073/pnas.1005963107
  contributor:
    fullname: Filippo
– volume: 58
  start-page: 47
  year: 2011
  ident: 10.1111/are.13312-BIB0061|are13312-cit-0061
  article-title: Pathological findings of experimental Aeromonas hydrophila infection in Nile tilapia (Oreochromis niloticus)
  publication-title: Ankara Univ Vet Fak Derg
  doi: 10.1501/Vetfak_0000002448
  contributor:
    fullname: Yardimci
– volume: 107
  start-page: 18933
  year: 2010
  ident: 10.1111/are.13312-BIB0004|are13312-cit-0004
  article-title: Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
  publication-title: Proceedings of the National Academy of Sciences of the United States of America
  doi: 10.1073/pnas.1007028107
  contributor:
    fullname: Benson
– volume: 27
  start-page: 2957
  year: 2011
  ident: 10.1111/are.13312-BIB0033|are13312-cit-0033
  article-title: FLASH: fast length adjustment of short reads to improve genome assemblies
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btr507
  contributor:
    fullname: Magoč
– volume: 37
  start-page: 6463
  year: 2009
  ident: 10.1111/are.13312-BIB0040|are13312-cit-0040
  article-title: Changes of biochemical characteristics and organization structure in liver of grass carp (Ctenopharyngodon idellus) with hepatobiliary syndrome
  publication-title: Journal of Anhui Agricultural Sciences
  contributor:
    fullname: Qian
– volume: 424
  start-page: 24
  year: 2014
  ident: 10.1111/are.13312-BIB0020|are13312-cit-0020
  article-title: The development of the gut microbiota in rainbow trout (Oncorhynchus mykiss) is affected by first feeding and diet type
  publication-title: Aquaculture
  doi: 10.1016/j.aquaculture.2013.12.032
  contributor:
    fullname: Ingerslev
– volume: 42
  start-page: 47
  year: 2010
  ident: 10.1111/are.13312-BIB0017|are13312-cit-0017
  article-title: Analysis of bacterial diversity in the intestine of grass carp (Ctenopharyngodon idellus) based on 16S rDNA gene sequences
  publication-title: Aquaculture Research
  doi: 10.1111/j.1365-2109.2010.02543.x
  contributor:
    fullname: Han
– volume: 46
  start-page: 2344
  year: 2015
  ident: 10.1111/are.13312-BIB0026|are13312-cit-0026
  article-title: Diversity of autochthonous bacterial communities in the intestinal mucosa of grass carp (Ctenopharyngodon idellus) (Valenciennes) determined by culture-dependent and culture-independent techniques
  publication-title: Aquaculture Research
  doi: 10.1111/are.12391
  contributor:
    fullname: Li
– volume: 6
  start-page: 121
  year: 2008
  ident: 10.1111/are.13312-BIB0015|are13312-cit-0015
  article-title: Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
  publication-title: Nature Reviews Microbiology
  doi: 10.1038/nrmicro1817
  contributor:
    fullname: Flint
– volume: 239
  start-page: 1489
  year: 2014
  ident: 10.1111/are.13312-BIB0053|are13312-cit-0053
  article-title: Bile acid dysregulation, gut dysbiosis, and gastrointestinal cancer
  publication-title: Experimental Biology and Medicine
  doi: 10.1177/1535370214538743
  contributor:
    fullname: Tsuei
– volume: 6
  start-page: 24340
  year: 2016
  ident: 10.1111/are.13312-BIB0030|are13312-cit-0030
  article-title: The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels
  publication-title: Scientific Reports
  doi: 10.1038/srep24340
  contributor:
    fullname: Liu
– volume: 41
  start-page: 3766
  year: 1981
  ident: 10.1111/are.13312-BIB0041|are13312-cit-0041
  article-title: Diet and excretion of bile acids
  publication-title: Cancer Research
  contributor:
    fullname: Reddy
– volume: 1849
  start-page: 196
  year: 2015
  ident: 10.1111/are.13312-BIB0014|are13312-cit-0014
  article-title: Bile acid signaling and liver regeneration
  publication-title: Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms
  doi: 10.1016/j.bbagrm.2014.05.021
  contributor:
    fullname: Fan
– volume: 12
  start-page: R60
  year: 2011
  ident: 10.1111/are.13312-BIB0048|are13312-cit-0048
  article-title: Metagenomic biomarker discovery and explanation
  publication-title: Genome Biology
  doi: 10.1186/gb-2011-12-6-r60
  contributor:
    fullname: Segata
– volume: 95
  start-page: 504
  year: 2013
  ident: 10.1111/are.13312-BIB0002|are13312-cit-0002
  article-title: Bile acids: from digestion to cancers
  publication-title: Biochimie
  doi: 10.1016/j.biochi.2012.06.022
  contributor:
    fullname: Baptissart
– volume: 24
  start-page: 656
  year: 2015
  ident: 10.1111/are.13312-BIB0035|are13312-cit-0035
  article-title: Diet strongly influences the gut microbiota of surgeonfishes
  publication-title: Molecular Ecology
  doi: 10.1111/mec.13050
  contributor:
    fullname: Miyake
– volume-title: Biology and Diseases of Grass Carp
  year: 1999
  ident: 10.1111/are.13312-BIB0037|are13312-cit-0037
  contributor:
    fullname: Ni
– volume: 63
  start-page: 1502
  year: 2015
  ident: 10.1111/are.13312-BIB0028|are13312-cit-0028
  article-title: Implications of microbiota and bile acid in liver injury and regeneration
  publication-title: Journal of Hepatology
  doi: 10.1016/j.jhep.2015.08.001
  contributor:
    fullname: Liu
– volume: 17
  start-page: 225
  year: 2013
  ident: 10.1111/are.13312-BIB0046|are13312-cit-0046
  article-title: Gut microbiota regulates bile acid metabolism by reducing the levels of tauro-beta-muricholic acid, a naturally occurring FXR antagonist
  publication-title: Cell Metabolism
  doi: 10.1016/j.cmet.2013.01.003
  contributor:
    fullname: Sayin
– volume: 6
  start-page: e25263
  year: 2011
  ident: 10.1111/are.13312-BIB0051|are13312-cit-0051
  article-title: Analysis of 16S rRNA amplicon sequencing options on the roche/454 next-generation titanium sequencing platform
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0025263
  contributor:
    fullname: Tamaki
– volume: 29
  start-page: 625
  year: 2005
  ident: 10.1111/are.13312-BIB0003|are13312-cit-0003
  article-title: The interaction between bacteria and bile
  publication-title: FEMS Microbiology Reviews
  doi: 10.1016/j.femsre.2004.09.003
  contributor:
    fullname: Begley
– volume: 278
  start-page: 39124
  year: 2003
  ident: 10.1111/are.13312-BIB0011|are13312-cit-0011
  article-title: Coordinated control of cholesterol catabolism to bile acids and of gluconeogenesis via a novel mechanism of transcription regulation linked to the fasted-to-fed cycle
  publication-title: Journal of Biological Chemistry
  doi: 10.1074/jbc.M305079200
  contributor:
    fullname: Fabiani
– volume: 71
  start-page: 8228
  year: 2005
  ident: 10.1111/are.13312-BIB0031|are13312-cit-0031
  article-title: UniFrac: a new phylogenetic method for comparing microbial communities
  publication-title: Applied and Environmental Microbiology
  doi: 10.1128/AEM.71.12.8228-8235.2005
  contributor:
    fullname: Lozupone
– volume: 102
  start-page: 1475
  year: 1992
  ident: 10.1111/are.13312-BIB0042|are13312-cit-0042
  article-title: Effect of dietary fiber on colonic bacterial enzymes and bile acids in relation to colon cancer
  publication-title: Gastroenterology
  doi: 10.1016/0016-5085(92)91704-8
  contributor:
    fullname: Reddy
– volume: 103
  start-page: 4333
  year: 2006
  ident: 10.1111/are.13312-BIB0019|are13312-cit-0019
  article-title: How bile acids confer gut mucosal protection against bacteria
  publication-title: Proceedings of the National Academy of Sciences of the United States of America
  doi: 10.1073/pnas.0600780103
  contributor:
    fullname: Hofmann
– volume: 42
  start-page: 1184
  year: 2005
  ident: 10.1111/are.13312-BIB0009|are13312-cit-0009
  article-title: Methotrexate (MTX) plus ursodeoxycholic acid (UDCA) in the treatment of primary biliary cirrhosis
  publication-title: Hepatology
  doi: 10.1002/hep.20897
  contributor:
    fullname: Combes
– volume: 109
  start-page: 593
  year: 2013
  ident: 10.1111/are.13312-BIB0023|are13312-cit-0023
  article-title: Transcriptional regulation of cholesterol and bile acid metabolism after dietary soyabean meal treatment in Atlantic salmon (Salmo salar L.)
  publication-title: British Journal of Nutrition
  doi: 10.1017/S0007114512002024
  contributor:
    fullname: Kortner
– year: 2016
  ident: 10.1111/are.13312-BIB0032|are13312-cit-0032
  article-title: Effects of low-level dietary microalgae supplementation on the distal intestinal microbiome of farmed rainbow trout Oncorhynchus mykiss (Walbaum)
  publication-title: Aquaculture Research
  doi: 10.1111/are.13080
  contributor:
    fullname: Lyons
– volume: 58
  start-page: 582
  year: 2009
  ident: 10.1111/are.13312-BIB0063|are13312-cit-0063
  article-title: Diversity of both the cultivable protease-producing bacteria and their extracellular proteases in the sediments of the south China Sea
  publication-title: Microbial Ecology
  doi: 10.1007/s00248-009-9506-z
  contributor:
    fullname: Zhou
– volume: 58
  start-page: 949
  year: 2013
  ident: 10.1111/are.13312-BIB0022|are13312-cit-0022
  article-title: Modulation of the fecal bile acid profile by gut microbiota in cirrhosis
  publication-title: Journal of Hepatology
  doi: 10.1016/j.jhep.2013.01.003
  contributor:
    fullname: Kakiyama
– volume: 108
  start-page: 4523
  year: 2011
  ident: 10.1111/are.13312-BIB0050|are13312-cit-0050
  article-title: Systemic gut microbial modulation of bile acid metabolism in host tissue compartments
  publication-title: Proceedings of the National Academy of Sciences of the United States of America
  doi: 10.1073/pnas.1006734107
  contributor:
    fullname: Swann
– volume: 113
  start-page: 1408
  year: 2004
  ident: 10.1111/are.13312-BIB0057|are13312-cit-0057
  article-title: Bile acids lower triglyceride levels via a pathway involving FXR, SHP, and SREBP-1c
  publication-title: Journal of Clinical Investigation
  doi: 10.1172/JCI21025
  contributor:
    fullname: Watanabe
– volume: 78
  start-page: 285
  year: 2011
  ident: 10.1111/are.13312-BIB0013|are13312-cit-0013
  article-title: Influence of the diet on the microbial diversity of faecal and gastrointestinal contents in gilthead sea bream (Sparus aurata) and intestinal contents in goldfish (Carassius auratus)
  publication-title: FEMS Microbiology Ecology
  doi: 10.1111/j.1574-6941.2011.01155.x
  contributor:
    fullname: Paula Silva
– year: 2016
  ident: 10.1111/are.13312-BIB0027|are13312-cit-0027
  article-title: Pika population density is associated with the composition and diversity of gut microbiota
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2016.00758
  contributor:
    fullname: Li
– volume: 41
  start-page: 1553
  year: 2010
  ident: 10.1111/are.13312-BIB0036|are13312-cit-0036
  article-title: Role of gastrointestinal microbiota in fish
  publication-title: Aquaculture Research
  doi: 10.1111/j.1365-2109.2010.02546.x
  contributor:
    fullname: Nayak
– volume: 1
  start-page: 41
  year: 2011
  ident: 10.1111/are.13312-BIB0055|are13312-cit-0055
  article-title: Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.)
  publication-title: AMB Express
  doi: 10.1186/2191-0855-1-41
  contributor:
    fullname: Kessel
– volume: 51
  start-page: 1101
  year: 2010
  ident: 10.1111/are.13312-BIB0056|are13312-cit-0056
  article-title: The gut microbiota modulates host energy and lipid metabolism in mice
  publication-title: Journal of Lipid Research
  doi: 10.1194/jlr.M002774
  contributor:
    fullname: Velagapudi
– volume: 45
  start-page: 175
  year: 2015
  ident: 10.1111/are.13312-BIB0029|are13312-cit-0029
  article-title: Effect of a new recombinant Aeromonas hydrophila vaccine on the grass carp intestinal microbiota and correlations with immunological responses
  publication-title: Fish & Shellfish Immunology
  doi: 10.1016/j.fsi.2015.03.043
  contributor:
    fullname: Liu
– volume: 146
  start-page: 1513
  year: 2014
  ident: 10.1111/are.13312-BIB0047|are13312-cit-0047
  article-title: Interactions between the intestinal microbiome and liver diseases
  publication-title: Gastroenterology
  doi: 10.1053/j.gastro.2014.01.020
  contributor:
    fullname: Schnabl
– volume: 336
  start-page: 1262
  year: 2012
  ident: 10.1111/are.13312-BIB0039|are13312-cit-0039
  article-title: Host-gut microbiota metabolic interactions
  publication-title: Science
  doi: 10.1126/science.1223813
  contributor:
    fullname: Nicholson
– volume: 47
  start-page: 241
  year: 2006
  ident: 10.1111/are.13312-BIB0143|are13312-cit-0143
  article-title: Bile salt biotransformations by human intestinal bacteria
  publication-title: Journal of Lipid Research
  doi: 10.1194/jlr.R500013-JLR200
  contributor:
    fullname: Ridlon
– volume: 272
  start-page: 930
  year: 1995
  ident: 10.1111/are.13312-BIB0006|are13312-cit-0006
  article-title: Ursodeoxycholate (Udca) inhibits the mitochondrial-membrane permeability transition induced by glycochenodeoxycholate - a mechanism of udca cytoprotection
  publication-title: Journal of Pharmacology and Experimental Therapeutics
  contributor:
    fullname: Botla
– volume: 91
  year: 2015
  ident: 10.1111/are.13312-BIB0060|are13312-cit-0060
  article-title: Metatranscriptomic discovery of plant biomass-degrading capacity from grass carp intestinal microbiomes
  publication-title: FEMS Microbiology Ecology
  doi: 10.1093/femsec/fiv107
  contributor:
    fullname: Wu
– volume: 159
  start-page: 2647
  year: 1999
  ident: 10.1111/are.13312-BIB0018|are13312-cit-0018
  article-title: The continuing importance of bile acids in liver and intestinal disease
  publication-title: Archives of Internal Medicine
  doi: 10.1001/archinte.159.22.2647
  contributor:
    fullname: Hofmann
– volume: 149
  start-page: 1578
  year: 2012
  ident: 10.1111/are.13312-BIB0008|are13312-cit-0008
  article-title: Gut immune maturation depends on colonization with a host-specific microbiota
  publication-title: Cell
  doi: 10.1016/j.cell.2012.04.037
  contributor:
    fullname: Chung
– volume: 69
  start-page: 25
  year: 2014
  ident: 10.1111/are.13312-BIB0025|are13312-cit-0025
  article-title: Comparative analysis of the intestinal bacterial communities in different species of carp by pyrosequencing
  publication-title: Microbial Ecology
  doi: 10.1007/s00248-014-0480-8
  contributor:
    fullname: Li
– volume: 124
  start-page: 1161
  year: 1994
  ident: 10.1111/are.13312-BIB0034|are13312-cit-0034
  article-title: Dietary psyllium hydrocolloid and pectin increase bile acid pool size and change bile acid composition in rats
  publication-title: The Journal of Nutrition
  doi: 10.1093/jn/124.8.1161
  contributor:
    fullname: Matheson
– volume: 46
  start-page: 43
  year: 2008
  ident: 10.1111/are.13312-BIB0052|are13312-cit-0052
  article-title: Novel ecological niche of Cetobacterium somerae, an anaerobic bacterium in the intestinal tracts of freshwater fish
  publication-title: Letters in Applied Microbiology
  contributor:
    fullname: Tsuchiya
– volume: 146
  start-page: 1391
  year: 2000
  ident: 10.1111/are.13312-BIB0001|are13312-cit-0001
  article-title: Three multidomain esterases from the cellulolytic rumen anaerobe Ruminococcus flavefaciens 17 that carry divergent dockerin sequences
  publication-title: Microbiology
  doi: 10.1099/00221287-146-6-1391
  contributor:
    fullname: Aurilia
– volume: 116
  start-page: 1396
  year: 2014
  ident: 10.1111/are.13312-BIB0024|are13312-cit-0024
  article-title: Characterization of the gut microbiota of three commercially valuable warmwater fish species
  publication-title: Journal of Applied Microbiology
  doi: 10.1111/jam.12475
  contributor:
    fullname: Larsen
– volume: 1
  year: 2009
  ident: 10.1111/are.13312-BIB0054|are13312-cit-0054
  article-title: The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
  publication-title: Science Translational Medicine
  doi: 10.1126/scitranslmed.3000322
  contributor:
    fullname: Turnbaugh
– volume: 439
  start-page: 484
  year: 2006
  ident: 10.1111/are.13312-BIB0058|are13312-cit-0058
  article-title: Bile acids induce energy expenditure by promoting intracellular thyroid hormone activation
  publication-title: Nature
  doi: 10.1038/nature04330
  contributor:
    fullname: Watanabe
– volume: 5
  start-page: 1595
  year: 2011
  ident: 10.1111/are.13312-BIB0044|are13312-cit-0044
  article-title: Evidence for a core gut microbiota in the zebrafish
  publication-title: ISME Journal
  doi: 10.1038/ismej.2011.38
  contributor:
    fullname: Roeselers
– volume: 7
  start-page: e30440
  year: 2012
  ident: 10.1111/are.13312-BIB0059|are13312-cit-0059
  article-title: Composition, diversity, and origin of the bacterial community in grass carp intestine
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0030440
  contributor:
    fullname: Wu
– volume: 14
  start-page: 1655
  year: 2016
  ident: 10.1111/are.13312-BIB0049|are13312-cit-0049
  article-title: The gut microbiota modulates energy metabolism in the hibernating brown bear ursus arctos
  publication-title: Cell Reports
  doi: 10.1016/j.celrep.2016.01.026
  contributor:
    fullname: Sommer
– volume: 87
  start-page: 704
  year: 2014
  ident: 10.1111/are.13312-BIB0038|are13312-cit-0038
  article-title: Factors influencing the grass carp gut microbiome and its effect on metabolism
  publication-title: FEMS Microbiology Ecology
  doi: 10.1111/1574-6941.12256
  contributor:
    fullname: Ni
– start-page: 119
  volume-title: Metabolic Profiling: Methods and Protocols
  year: 2011
  ident: 10.1111/are.13312-BIB0016|are13312-cit-0016
  doi: 10.1007/978-1-61737-985-7_6
  contributor:
    fullname: Hagio
– volume: 36
  start-page: 1215
  year: 2006
  ident: 10.1111/are.13312-BIB0005|are13312-cit-0005
  article-title: The gut microbiota: a complex ecosystem
  publication-title: Clinical and Experimental Allergy
  doi: 10.1111/j.1365-2222.2006.02579.x
  contributor:
    fullname: Bjorksten
– volume: 32
  start-page: 2094
  year: 1979
  ident: 10.1111/are.13312-BIB0010|are13312-cit-0010
  article-title: The effect of meat protein and dietary fiber on colonic function and metabolism; I. Changes in bowel habit, bile acid excretion, and calcium absorption
  publication-title: American Journal of Clinical Nutrition
  doi: 10.1093/ajcn/32.10.2094
  contributor:
    fullname: Cummings
– volume: 489
  start-page: 220
  year: 2012
  ident: 10.1111/are.13312-BIB0132|are13312-cit-0132
  article-title: Diversity, stability and resilience of the human gut microbiota
  publication-title: Nature
  doi: 10.1038/nature11550
  contributor:
    fullname: Lozupone
– volume: 292
  start-page: 1119
  year: 2001
  ident: 10.1111/are.13312-BIB0045|are13312-cit-0045
  article-title: Factors that alter rumen microbial ecology
  publication-title: Science
  doi: 10.1126/science.1058830
  contributor:
    fullname: Russell
SSID ssj0014031
Score 2.3502314
Snippet To elucidate the influence of different diet on the intestinal microbe and bile acids, we characterized the microbiota and bile acids in the hindgut content of...
SourceID proquest
crossref
wiley
SourceType Aggregation Database
Publisher
StartPage 4934
SubjectTerms Acids
Bile
Bile acids
Carp
Chenodeoxycholic acid
Deoxycholic acid
Diet
Freshwater fishes
grass carp
gut microbe
Hindgut
Intestinal microflora
Intestine
Ursodeoxycholic acid
Title The influence of diet on the grass carp intestinal microbiota and bile acids
URI https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fare.13312
https://www.proquest.com/docview/1926857825
Volume 48
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3NS8MwFH-MnfTgtzidEsSDl471I02Hp6EbQ9TDcLCDUJI0GUVspesu_vW-pO2cgiDeQmlC-r7ye-nLLwBXjAmlfMUdGQyYEySCOiLhAj3eFX18JphrTiM_PoWTWXA_p_MW3DRnYSp-iPWGm_EMG6-Ng3Ox3HByXqgeJlj2hmHXZ6ac6266po4yNHRVskWpQymb16xCpopn3fP7WvQFMDdhql1nxrvw0sywKi957a1K0ZMfP8gb__kJe7BT408yrAxmH1oqO4Dt4aKoOTjUITyg6ZC0ubyE5JokqSpJnhEEi2RRINwm5rcNMVQTGCHMeG9pRehUcsKzhAicDuEyTZZHMBuPnm8nTn3pgiN9k5j6kaQIoVBJSjIpkyBg_kBhVqSV4NhORKSZxqRNu6FSkdCh1KEWqPFBn0Y88I-hneWZOgHiSeysNXc9bEmqBZUYUdxQRtrXWnsduGzEH79X3Bpxk5OgaGIrmg50G8XEtXstY4SlYWSI-GkHrq2Efx8gHk5HtnH691fPYMszy7etJetCuyxW6hzBRykurJV9AhiH1jY
link.rule.ids 315,783,787,1378,27936,27937,46306,46730
linkProvider Wiley-Blackwell
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LSwMxEB6KHtSDb7FaNYgHL1u6j2y24KVoS9W2h9JCL7Ik2aQs4lba7cVf72QftQqCeAvLJmRnMjPfZJNvAG4YE0q5ilvSazLLiwS1RMQFWrwtGvhMMNvcRu4P_O7Ye5rQSQXuyrswOT_EasPNWEbmr42Bmw3pNSvnc1XHDMuUGN5Ec3dN4YaH4Yo8yhDR5ekWpRalbFLwCplzPKuu36PRF8RcB6pZpOnswUs5x_yAyWt9mYq6_PhB3_jfj9iH3QKCkla-Zg6gopJD2GlN5wUNhzqCHq4eEpf1S8hMkyhWKZklBPEimc4RcRPz54YYtgl0Ema8tzjndEo54UlEBM6HcBlHi2MYd9qj-65V1F2wpGtyUzeQFFEU6klJJmXkecxtKkyMtBIc25EINNOYt2nbVyoQ2pfa1wKV3mzQgHvuCWwks0SdAnEkdtaa2w62JNWCSnQqti8D7WqtnSpcl_IP33N6jbBMS1A0YSaaKtRKzYSFhS1CRKZ-YLj4aRVuMxH_PkDYGrazxtnfX72Cre6o3wt7j4Pnc9h2TDTPjpbVYCOdL9UFYpFUXGZL7hN7YdpO
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1bS8MwFD4MBdEH7-J0ahAffOlYL2k6fBq6MXUOGQ72IJQkTUYRu7F1L_56T3qZUxDEt1CakJ6cy3fS5DsAV4wJpVzFLek1meVFgloi4gIt3hYNfCaYbW4jP_X97tB7GNFRBW7KuzA5P8Ryw81YRuavjYFPI71i5Hym6phgmQrD656PyNcgosGSO8rw0OXZFqUWpWxU0AqZYzzLrt-D0RfCXMWpWaDp7MBrOcX8fMlbfZGKuvz4wd74z2_Yhe0CgJJWrjF7UFHJPmy1xrOChEMdQA91h8Rl9RIy0SSKVUomCUG0SMYzxNvE_LchhmsCXYQZ7z3OGZ1STngSEYHTIVzG0fwQhp32y23XKqouWNI1makbSIoYCldJSSZl5HnMbSpMi7QSHNuRCDTTmLVp21cqENqX2tcCl7zZoAH33CNYSyaJOgbiSOysNbcdbEmqBZXoUmxfBtrVWjtVuCzFH05zco2wTEpQNGEmmirUyoUJC_uah4hL_cAw8dMqXGcS_n2AsDVoZ42Tv796ARvPd52wd99_PIVNx4Ty7FxZDdbS2UKdIRBJxXmmcJ8S9dj9
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=The+influence+of+diet+on+the+grass+carp+intestinal+microbiota+and+bile+acids&rft.jtitle=Aquaculture+research&rft.au=Zhang%2C+Jing&rft.au=Xiong%2C+Fan&rft.au=Wang%2C+Gui-Tang&rft.au=Li%2C+Wen-Xiang&rft.date=2017-09-01&rft.pub=Hindawi+Limited&rft.issn=1355-557X&rft.eissn=1365-2109&rft.volume=48&rft.issue=9&rft.spage=4934&rft_id=info:doi/10.1111%2Fare.13312&rft.externalDBID=HAS_PDF_LINK
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1355-557X&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1355-557X&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1355-557X&client=summon