Phocaeicola acetigenes sp. nov., producing acetic acid and iso-butyric acid, isolated faeces from a healthy human

An obligately anaerobic, non-motile, Gram-stain-negative, and rod-shaped strain KGMB11183 T was isolated from the feces of healthy Koreans. The growth of strain KGMB11183 T occurred at 30–45 °C (optimum 37 °C), at pH 6–9 (optimum pH 7), and in the presence of 0–0.5% NaCl (optimum 0%). Strain KGMB111...

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Published inAntonie van Leeuwenhoek Vol. 117; no. 1; p. 30
Main Authors Do, Hyo Eun, Ha, Young Bong, Kim, Ji-Sun, Suh, Min Kuk, Kim, Han Sol, Eom, Mi Kyung, Lee, Ju Huck, Park, Seung-Hwan, Kang, Se Won, Lee, Dong Ho, Yoon, Hyuk, Lee, Je Hee, Lee, Jung-Sook
Format Journal Article
LanguageEnglish
Published Cham Springer International Publishing 01.12.2024
Springer Nature B.V
Subjects
Acetic Acid
Bacterial Typing Techniques
Bacteroidetes - genetics
Biomedical and Life Sciences
Butyric Acid
DNA, Bacterial - genetics
Fatty Acids - chemistry
Feces
Fermentation
Gene sequencing
Genomes
Genomic analysis
Humans
Isobutyric acid
Life Sciences
Medical Microbiology
Microbiology
New species
Original Paper
Phylogenetics
Phylogeny
Plant Sciences
Polysaccharides
RNA, Ribosomal, 16S - genetics
rRNA 16S
Saccharides
Sequence Analysis, DNA
Sodium chloride
Soil Science & Conservation
Strain analysis
Gut microbiota
sp. nov
Taxonomy
Human faeces
Phocaeicola acetigenes sp. nov
Online AccessGet full text

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Abstract An obligately anaerobic, non-motile, Gram-stain-negative, and rod-shaped strain KGMB11183 T was isolated from the feces of healthy Koreans. The growth of strain KGMB11183 T occurred at 30–45 °C (optimum 37 °C), at pH 6–9 (optimum pH 7), and in the presence of 0–0.5% NaCl (optimum 0%). Strain KGMB11183 T showed 16S rRNA gene sequence similarities of 95.4% and 94.2% to the closest recognized species, Phocaeicola plebeius M12 T , and Phocaeicola faecicola AGMB03916 T . Phylogenetic analysis showed that strain KGMB11183 T is a member of the genus Phocaeiocla . The major end products of fermentation are acetic acid and isobutyric acid. The major cellular fatty acids (> 10%) of this isolate were C 18:1 cis 9, anteiso-C 15:0 , and summed feature 11 (iso-C 17:0 3-OH and/or C 18:2 DMA). The assembled draft genome sequences of strain KGMB11183 T consisted of 3,215,271 bp with a DNA G + C content of 41.4%. According to genomic analysis, strain KGMB11183 T has a number of genes that produce acetic acid. The genome of strain KGMB11183 T encoded the starch utilization system (Sus) operon, SusCDEF suggesting that strain uses many complex polysaccharides that cannot be digested by humans. Based on the physiological, chemotaxonomic, phenotypic, and phylogenetic data, strain KGMB11183 T is regarded a novel species of the genus Phocaeicola . The type strain is KGMB11183 T (= KCTC 25284 T  = JCM 35696 T ).
AbstractList An obligately anaerobic, non-motile, Gram-stain-negative, and rod-shaped strain KGMB11183T was isolated from the feces of healthy Koreans. The growth of strain KGMB11183T occurred at 30–45 °C (optimum 37 °C), at pH 6–9 (optimum pH 7), and in the presence of 0–0.5% NaCl (optimum 0%). Strain KGMB11183T showed 16S rRNA gene sequence similarities of 95.4% and 94.2% to the closest recognized species, Phocaeicola plebeius M12T, and Phocaeicola faecicola AGMB03916T. Phylogenetic analysis showed that strain KGMB11183T is a member of the genus Phocaeiocla. The major end products of fermentation are acetic acid and isobutyric acid. The major cellular fatty acids (> 10%) of this isolate were C18:1cis 9, anteiso-C15:0, and summed feature 11 (iso-C17:0 3-OH and/or C18:2 DMA). The assembled draft genome sequences of strain KGMB11183T consisted of 3,215,271 bp with a DNA G + C content of 41.4%. According to genomic analysis, strain KGMB11183T has a number of genes that produce acetic acid. The genome of strain KGMB11183T encoded the starch utilization system (Sus) operon, SusCDEF suggesting that strain uses many complex polysaccharides that cannot be digested by humans. Based on the physiological, chemotaxonomic, phenotypic, and phylogenetic data, strain KGMB11183T is regarded a novel species of the genus Phocaeicola. The type strain is KGMB11183T (= KCTC 25284T = JCM 35696T).
An obligately anaerobic, non-motile, Gram-stain-negative, and rod-shaped strain KGMB11183 was isolated from the feces of healthy Koreans. The growth of strain KGMB11183 occurred at 30-45 °C (optimum 37 °C), at pH 6-9 (optimum pH 7), and in the presence of 0-0.5% NaCl (optimum 0%). Strain KGMB11183 showed 16S rRNA gene sequence similarities of 95.4% and 94.2% to the closest recognized species, Phocaeicola plebeius M12 , and Phocaeicola faecicola AGMB03916 . Phylogenetic analysis showed that strain KGMB11183 is a member of the genus Phocaeiocla. The major end products of fermentation are acetic acid and isobutyric acid. The major cellular fatty acids (> 10%) of this isolate were C cis 9, anteiso-C , and summed feature 11 (iso-C 3-OH and/or C DMA). The assembled draft genome sequences of strain KGMB11183 consisted of 3,215,271 bp with a DNA G + C content of 41.4%. According to genomic analysis, strain KGMB11183 has a number of genes that produce acetic acid. The genome of strain KGMB11183 encoded the starch utilization system (Sus) operon, SusCDEF suggesting that strain uses many complex polysaccharides that cannot be digested by humans. Based on the physiological, chemotaxonomic, phenotypic, and phylogenetic data, strain KGMB11183 is regarded a novel species of the genus Phocaeicola. The type strain is KGMB11183 (= KCTC 25284  = JCM 35696 ).
An obligately anaerobic, non-motile, Gram-stain-negative, and rod-shaped strain KGMB11183T was isolated from the feces of healthy Koreans. The growth of strain KGMB11183T occurred at 30-45 °C (optimum 37 °C), at pH 6-9 (optimum pH 7), and in the presence of 0-0.5% NaCl (optimum 0%). Strain KGMB11183T showed 16S rRNA gene sequence similarities of 95.4% and 94.2% to the closest recognized species, Phocaeicola plebeius M12T, and Phocaeicola faecicola AGMB03916T. Phylogenetic analysis showed that strain KGMB11183T is a member of the genus Phocaeiocla. The major end products of fermentation are acetic acid and isobutyric acid. The major cellular fatty acids (> 10%) of this isolate were C18:1 cis 9, anteiso-C15:0, and summed feature 11 (iso-C17:0 3-OH and/or C18:2 DMA). The assembled draft genome sequences of strain KGMB11183T consisted of 3,215,271 bp with a DNA G + C content of 41.4%. According to genomic analysis, strain KGMB11183T has a number of genes that produce acetic acid. The genome of strain KGMB11183T encoded the starch utilization system (Sus) operon, SusCDEF suggesting that strain uses many complex polysaccharides that cannot be digested by humans. Based on the physiological, chemotaxonomic, phenotypic, and phylogenetic data, strain KGMB11183T is regarded a novel species of the genus Phocaeicola. The type strain is KGMB11183T (= KCTC 25284T = JCM 35696T).
An obligately anaerobic, non-motile, Gram-stain-negative, and rod-shaped strain KGMB11183 T was isolated from the feces of healthy Koreans. The growth of strain KGMB11183 T occurred at 30–45 °C (optimum 37 °C), at pH 6–9 (optimum pH 7), and in the presence of 0–0.5% NaCl (optimum 0%). Strain KGMB11183 T showed 16S rRNA gene sequence similarities of 95.4% and 94.2% to the closest recognized species, Phocaeicola plebeius M12 T , and Phocaeicola faecicola AGMB03916 T . Phylogenetic analysis showed that strain KGMB11183 T is a member of the genus Phocaeiocla . The major end products of fermentation are acetic acid and isobutyric acid. The major cellular fatty acids (> 10%) of this isolate were C 18:1 cis 9, anteiso-C 15:0 , and summed feature 11 (iso-C 17:0 3-OH and/or C 18:2 DMA). The assembled draft genome sequences of strain KGMB11183 T consisted of 3,215,271 bp with a DNA G + C content of 41.4%. According to genomic analysis, strain KGMB11183 T has a number of genes that produce acetic acid. The genome of strain KGMB11183 T encoded the starch utilization system (Sus) operon, SusCDEF suggesting that strain uses many complex polysaccharides that cannot be digested by humans. Based on the physiological, chemotaxonomic, phenotypic, and phylogenetic data, strain KGMB11183 T is regarded a novel species of the genus Phocaeicola . The type strain is KGMB11183 T (= KCTC 25284 T  = JCM 35696 T ).
ArticleNumber 30
Author Lee, Jung-Sook
Kim, Ji-Sun
Kim, Han Sol
Lee, Dong Ho
Ha, Young Bong
Kang, Se Won
Park, Seung-Hwan
Yoon, Hyuk
Eom, Mi Kyung
Lee, Ju Huck
Do, Hyo Eun
Lee, Je Hee
Suh, Min Kuk
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Keywords Gut microbiota
sp. nov
Taxonomy
Human faeces
Phocaeicola acetigenes sp. nov
Language English
License 2024. The Author(s), under exclusive licence to Springer Nature Switzerland AG.
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Snippet An obligately anaerobic, non-motile, Gram-stain-negative, and rod-shaped strain KGMB11183 T was isolated from the feces of healthy Koreans. The growth of...
An obligately anaerobic, non-motile, Gram-stain-negative, and rod-shaped strain KGMB11183 was isolated from the feces of healthy Koreans. The growth of strain...
An obligately anaerobic, non-motile, Gram-stain-negative, and rod-shaped strain KGMB11183T was isolated from the feces of healthy Koreans. The growth of strain...
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springer
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StartPage 30
SubjectTerms Acetic Acid
Bacterial Typing Techniques
Bacteroidetes - genetics
Biomedical and Life Sciences
Butyric Acid
DNA, Bacterial - genetics
Fatty Acids - chemistry
Feces
Fermentation
Gene sequencing
Genomes
Genomic analysis
Humans
Isobutyric acid
Life Sciences
Medical Microbiology
Microbiology
New species
Original Paper
Phylogenetics
Phylogeny
Plant Sciences
Polysaccharides
RNA, Ribosomal, 16S - genetics
rRNA 16S
Saccharides
Sequence Analysis, DNA
Sodium chloride
Soil Science & Conservation
Strain analysis
Title Phocaeicola acetigenes sp. nov., producing acetic acid and iso-butyric acid, isolated faeces from a healthy human
URI https://link.springer.com/article/10.1007/s10482-024-01930-8
https://www.ncbi.nlm.nih.gov/pubmed/38302626
https://www.proquest.com/docview/2921364575/abstract/
https://search.proquest.com/docview/2922445856
Volume 117
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