High-throughput DNA sequence analysis elucidates novel insight into the genetic basis of adaptation in local sheep
Understanding how evolutionary factors related to climate adaptation and human selection have influenced the genetic architecture of domesticated animals is of great interest in biology. In the current study, by using 304 whole genomes from different geographical regions (including Europe, north Afr...
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| Published in | Tropical animal health and production Vol. 56; no. 4; p. 150 |
|---|---|
| Main Authors | , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Dordrecht
Springer Netherlands
01.05.2024
Springer Nature B.V |
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| Abstract | Understanding how evolutionary factors related to climate adaptation and human selection have influenced the genetic architecture of domesticated animals is of great interest in biology. In the current study, by using 304 whole genomes from different geographical regions (including Europe, north Africa, Southwest Asia, east Asia, west Africa, south Asia, east Africa, Australia and Turkey), We evaluate global sheep population dynamics in terms of genetic variation and population structure. We further conducted comparative population analysis to study the genetic underpinnings of climate adaption to local environments and also morphological traits. In order to identify genomic signals under selection, we applied fixation index (
F
ST) and also nucleotide diversity (θπ) statistical measurements. Our results revealed several candidate genes on different chromosomes under selection for local climate adaptation (e.g.
HOXC12
,
HOXC13
,
IRF1
,
FGD2
and
GNAQ
), body size (
PDGFA
,
HMGA2
,
PDE3A
) and also morphological related traits (
RXFP2
). The discovered candidate genes may offer newel insights into genetic underpinning of regional adaptation and commercially significant features in local sheep. |
|---|---|
| AbstractList | Understanding how evolutionary factors related to climate adaptation and human selection have influenced the genetic architecture of domesticated animals is of great interest in biology. In the current study, by using 304 whole genomes from different geographical regions (including Europe, north Africa, Southwest Asia, east Asia, west Africa, south Asia, east Africa, Australia and Turkey), We evaluate global sheep population dynamics in terms of genetic variation and population structure. We further conducted comparative population analysis to study the genetic underpinnings of climate adaption to local environments and also morphological traits. In order to identify genomic signals under selection, we applied fixation index (
F
ST) and also nucleotide diversity (θπ) statistical measurements. Our results revealed several candidate genes on different chromosomes under selection for local climate adaptation (e.g.
HOXC12
,
HOXC13
,
IRF1
,
FGD2
and
GNAQ
), body size (
PDGFA
,
HMGA2
,
PDE3A
) and also morphological related traits (
RXFP2
). The discovered candidate genes may offer newel insights into genetic underpinning of regional adaptation and commercially significant features in local sheep. Understanding how evolutionary factors related to climate adaptation and human selection have influenced the genetic architecture of domesticated animals is of great interest in biology. In the current study, by using 304 whole genomes from different geographical regions (including Europe, north Africa, Southwest Asia, east Asia, west Africa, south Asia, east Africa, Australia and Turkey), We evaluate global sheep population dynamics in terms of genetic variation and population structure. We further conducted comparative population analysis to study the genetic underpinnings of climate adaption to local environments and also morphological traits. In order to identify genomic signals under selection, we applied fixation index (FST) and also nucleotide diversity (θπ) statistical measurements. Our results revealed several candidate genes on different chromosomes under selection for local climate adaptation (e.g. HOXC12, HOXC13, IRF1, FGD2 and GNAQ), body size (PDGFA, HMGA2, PDE3A) and also morphological related traits (RXFP2). The discovered candidate genes may offer newel insights into genetic underpinning of regional adaptation and commercially significant features in local sheep. |
| ArticleNumber | 150 |
| Author | Asadollahpour Nanaei, Hojjat Farahvashi, Mohammad Ali Asadi Fozi, Masood Banabazi, Mohammad Hossein Mousavi, Seyedeh Fatemeh Amiri Ghanatsaman, Zeinab |
| Author_xml | – sequence: 1 givenname: Hojjat orcidid: 0000-0002-5220-828X surname: Asadollahpour Nanaei fullname: Asadollahpour Nanaei, Hojjat email: h.asadollahpour@agr.uk.ac.ir organization: Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Animal Science Research Department, Fars Agricultural and Natural Resources Research and Education Center, Agricultural Research, Education and Extension Organization (AREEO) – sequence: 2 givenname: Zeinab surname: Amiri Ghanatsaman fullname: Amiri Ghanatsaman, Zeinab organization: Animal Science Research Department, Fars Agricultural and Natural Resources Research and Education Center, Agricultural Research, Education and Extension Organization (AREEO) – sequence: 3 givenname: Mohammad Ali surname: Farahvashi fullname: Farahvashi, Mohammad Ali organization: Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman – sequence: 4 givenname: Seyedeh Fatemeh surname: Mousavi fullname: Mousavi, Seyedeh Fatemeh organization: Department of Animal Science, Faculty of Agriculture, University of Kurdistan – sequence: 5 givenname: Mohammad Hossein surname: Banabazi fullname: Banabazi, Mohammad Hossein organization: Department of Biotechnology, Animal Science Research Institute of IRAN (ASRI) Agricultural Research, Education & Extension Organization (AREEO), Department of Animal Biosciences (HBIO), Centre for Veterinary Medicine and Animal Science (VHC), Swedish University of Agricultural Sciences (SLU) – sequence: 6 givenname: Masood surname: Asadi Fozi fullname: Asadi Fozi, Masood email: masadi@uk.ac.ir organization: Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/38691202$$D View this record in MEDLINE/PubMed |
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| Keywords | Sheep Whole genome Candidate gene Genetic variation Local adaptation |
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| SubjectTerms | Adaptation Adaptation, Physiological - genetics Animal populations Animals Biomedical and Life Sciences Body size Chromosomes Climate Climate adaptation Domestic animals Dynamic structural analysis Genes Genetic diversity Genetic Variation High-Throughput Nucleotide Sequencing - veterinary Interferon regulatory factor 1 Life Sciences Morphology Nucleotide sequence Nucleotides Population dynamics Population genetics Population structure Population studies Regular Articles Selection, Genetic Sequence analysis Sequence Analysis, DNA Sheep Sheep - genetics Sheep, Domestic - genetics Sheep, Domestic - physiology Veterinary Medicine/Veterinary Science Zoology |
| Title | High-throughput DNA sequence analysis elucidates novel insight into the genetic basis of adaptation in local sheep |
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