Detection of Cerebral Microbleeds in MR Images Using a Single‐Stage Triplanar Ensemble Detection Network (TPE‐Det)

Background Cerebral microbleeds (CMBs) are microscopic brain hemorrhages with implications for various diseases. Automated detection of CMBs is a challenging task due to their wide distribution throughout the brain, small size, and visual similarity to their mimics. For this reason, most of the prev...

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Published inJournal of magnetic resonance imaging Vol. 58; no. 1; pp. 272 - 283
Main Authors Lee, Haejoon, Kim, Jun‐Ho, Lee, Seul, Jung, Kyu‐Jin, Kim, Woo‐Ram, Noh, Young, Kim, Eung Yeop, Kang, Koung Mi, Sohn, Chul‐Ho, Lee, Dong Young, Al‐masni, Mohammed A., Kim, Dong‐Hyun
Format Journal Article
LanguageEnglish
Published Hoboken, USA John Wiley & Sons, Inc 01.07.2023
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Abstract Background Cerebral microbleeds (CMBs) are microscopic brain hemorrhages with implications for various diseases. Automated detection of CMBs is a challenging task due to their wide distribution throughout the brain, small size, and visual similarity to their mimics. For this reason, most of the previously proposed methods have been accomplished through two distinct stages, which may lead to difficulties in integrating them into clinical workflows. Purpose To develop a clinically feasible end‐to‐end CMBs detection network with a single‐stage structure utilizing 3D information. This study proposes triplanar ensemble detection network (TPE‐Det), ensembling 2D convolutional neural networks (CNNs) based detection networks on axial, sagittal, and coronal planes. Study Type Retrospective. Subjects Two datasets (DS1 and DS2) were used: 1) 116 patients with 367 CMBs and 12 patients without CMBs for training, validation, and testing (70.39 ± 9.30 years, 68 women, 60 men, DS1); 2) 58 subjects with 148 microbleeds and 21 subjects without CMBs only for testing (76.13 ± 7.89 years, 47 women, 32 men, DS2). Field Strength/Sequence A 3 T field strength and 3D GRE sequence scan for SWI reconstructions. Assessment The sensitivity, FPavg (false‐positive per subject), and precision measures were computed and analyzed with statistical analysis. Statistical Tests A paired t‐test was performed to investigate the improvement of detection performance by the suggested ensembling technique in this study. A P value < 0.05 was considered significant. Results The proposed TPE‐Det detected CMBs on the DS1 testing set with a sensitivity of 96.05% and an FPavg of 0.88, presenting statistically significant improvement. Even when the testing on DS2 was performed without retraining, the proposed model provided a sensitivity of 85.03% and an FPavg of 0.55. The precision was significantly higher than the other models. Data Conclusion The ensembling of multidimensional networks significantly improves precision, suggesting that this new approach could increase the benefits of detecting lesions in the clinic. Evidence Level 1 Technical Efficacy Stage 2
AbstractList BackgroundCerebral microbleeds (CMBs) are microscopic brain hemorrhages with implications for various diseases. Automated detection of CMBs is a challenging task due to their wide distribution throughout the brain, small size, and visual similarity to their mimics. For this reason, most of the previously proposed methods have been accomplished through two distinct stages, which may lead to difficulties in integrating them into clinical workflows.PurposeTo develop a clinically feasible end‐to‐end CMBs detection network with a single‐stage structure utilizing 3D information. This study proposes triplanar ensemble detection network (TPE‐Det), ensembling 2D convolutional neural networks (CNNs) based detection networks on axial, sagittal, and coronal planes.Study TypeRetrospective.SubjectsTwo datasets (DS1 and DS2) were used: 1) 116 patients with 367 CMBs and 12 patients without CMBs for training, validation, and testing (70.39 ± 9.30 years, 68 women, 60 men, DS1); 2) 58 subjects with 148 microbleeds and 21 subjects without CMBs only for testing (76.13 ± 7.89 years, 47 women, 32 men, DS2).Field Strength/SequenceA 3 T field strength and 3D GRE sequence scan for SWI reconstructions.AssessmentThe sensitivity, FPavg (false‐positive per subject), and precision measures were computed and analyzed with statistical analysis.Statistical TestsA paired t‐test was performed to investigate the improvement of detection performance by the suggested ensembling technique in this study. A P value < 0.05 was considered significant.ResultsThe proposed TPE‐Det detected CMBs on the DS1 testing set with a sensitivity of 96.05% and an FPavg of 0.88, presenting statistically significant improvement. Even when the testing on DS2 was performed without retraining, the proposed model provided a sensitivity of 85.03% and an FPavg of 0.55. The precision was significantly higher than the other models.Data ConclusionThe ensembling of multidimensional networks significantly improves precision, suggesting that this new approach could increase the benefits of detecting lesions in the clinic.Evidence Level1Technical EfficacyStage 2
Cerebral microbleeds (CMBs) are microscopic brain hemorrhages with implications for various diseases. Automated detection of CMBs is a challenging task due to their wide distribution throughout the brain, small size, and visual similarity to their mimics. For this reason, most of the previously proposed methods have been accomplished through two distinct stages, which may lead to difficulties in integrating them into clinical workflows. To develop a clinically feasible end-to-end CMBs detection network with a single-stage structure utilizing 3D information. This study proposes triplanar ensemble detection network (TPE-Det), ensembling 2D convolutional neural networks (CNNs) based detection networks on axial, sagittal, and coronal planes. Retrospective. Two datasets (DS1 and DS2) were used: 1) 116 patients with 367 CMBs and 12 patients without CMBs for training, validation, and testing (70.39 ± 9.30 years, 68 women, 60 men, DS1); 2) 58 subjects with 148 microbleeds and 21 subjects without CMBs only for testing (76.13 ± 7.89 years, 47 women, 32 men, DS2). A 3 T field strength and 3D GRE sequence scan for SWI reconstructions. The sensitivity, FP (false-positive per subject), and precision measures were computed and analyzed with statistical analysis. A paired t-test was performed to investigate the improvement of detection performance by the suggested ensembling technique in this study. A P value < 0.05 was considered significant. The proposed TPE-Det detected CMBs on the DS1 testing set with a sensitivity of 96.05% and an FP of 0.88, presenting statistically significant improvement. Even when the testing on DS2 was performed without retraining, the proposed model provided a sensitivity of 85.03% and an FP of 0.55. The precision was significantly higher than the other models. The ensembling of multidimensional networks significantly improves precision, suggesting that this new approach could increase the benefits of detecting lesions in the clinic. 1 TECHNICAL EFFICACY: Stage 2.
Background Cerebral microbleeds (CMBs) are microscopic brain hemorrhages with implications for various diseases. Automated detection of CMBs is a challenging task due to their wide distribution throughout the brain, small size, and visual similarity to their mimics. For this reason, most of the previously proposed methods have been accomplished through two distinct stages, which may lead to difficulties in integrating them into clinical workflows. Purpose To develop a clinically feasible end‐to‐end CMBs detection network with a single‐stage structure utilizing 3D information. This study proposes triplanar ensemble detection network (TPE‐Det), ensembling 2D convolutional neural networks (CNNs) based detection networks on axial, sagittal, and coronal planes. Study Type Retrospective. Subjects Two datasets (DS1 and DS2) were used: 1) 116 patients with 367 CMBs and 12 patients without CMBs for training, validation, and testing (70.39 ± 9.30 years, 68 women, 60 men, DS1); 2) 58 subjects with 148 microbleeds and 21 subjects without CMBs only for testing (76.13 ± 7.89 years, 47 women, 32 men, DS2). Field Strength/Sequence A 3 T field strength and 3D GRE sequence scan for SWI reconstructions. Assessment The sensitivity, FPavg (false‐positive per subject), and precision measures were computed and analyzed with statistical analysis. Statistical Tests A paired t‐test was performed to investigate the improvement of detection performance by the suggested ensembling technique in this study. A P value < 0.05 was considered significant. Results The proposed TPE‐Det detected CMBs on the DS1 testing set with a sensitivity of 96.05% and an FPavg of 0.88, presenting statistically significant improvement. Even when the testing on DS2 was performed without retraining, the proposed model provided a sensitivity of 85.03% and an FPavg of 0.55. The precision was significantly higher than the other models. Data Conclusion The ensembling of multidimensional networks significantly improves precision, suggesting that this new approach could increase the benefits of detecting lesions in the clinic. Evidence Level 1 Technical Efficacy Stage 2
Background Cerebral microbleeds (CMBs) are microscopic brain hemorrhages with implications for various diseases. Automated detection of CMBs is a challenging task due to their wide distribution throughout the brain, small size, and visual similarity to their mimics. For this reason, most of the previously proposed methods have been accomplished through two distinct stages, which may lead to difficulties in integrating them into clinical workflows. Purpose To develop a clinically feasible end‐to‐end CMBs detection network with a single‐stage structure utilizing 3D information. This study proposes triplanar ensemble detection network (TPE‐Det), ensembling 2D convolutional neural networks (CNNs) based detection networks on axial, sagittal, and coronal planes. Study Type Retrospective. Subjects Two datasets (DS1 and DS2) were used: 1) 116 patients with 367 CMBs and 12 patients without CMBs for training, validation, and testing (70.39 ± 9.30 years, 68 women, 60 men, DS1); 2) 58 subjects with 148 microbleeds and 21 subjects without CMBs only for testing (76.13 ± 7.89 years, 47 women, 32 men, DS2). Field Strength/Sequence A 3 T field strength and 3D GRE sequence scan for SWI reconstructions. Assessment The sensitivity, FP avg (false‐positive per subject), and precision measures were computed and analyzed with statistical analysis. Statistical Tests A paired t ‐test was performed to investigate the improvement of detection performance by the suggested ensembling technique in this study. A P value < 0.05 was considered significant. Results The proposed TPE‐Det detected CMBs on the DS1 testing set with a sensitivity of 96.05% and an FP avg of 0.88, presenting statistically significant improvement. Even when the testing on DS2 was performed without retraining, the proposed model provided a sensitivity of 85.03% and an FP avg of 0.55. The precision was significantly higher than the other models. Data Conclusion The ensembling of multidimensional networks significantly improves precision, suggesting that this new approach could increase the benefits of detecting lesions in the clinic. Evidence Level 1 Technical Efficacy Stage 2
Author Sohn, Chul‐Ho
Al‐masni, Mohammed A.
Lee, Haejoon
Kim, Eung Yeop
Jung, Kyu‐Jin
Noh, Young
Kang, Koung Mi
Lee, Seul
Lee, Dong Young
Kim, Jun‐Ho
Kim, Woo‐Ram
Kim, Dong‐Hyun
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Keywords deep learning
cerebral microbleeds
computer-aided detection
susceptibility-weighted imaging
EfficientDet
CNNs
Language English
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Snippet Background Cerebral microbleeds (CMBs) are microscopic brain hemorrhages with implications for various diseases. Automated detection of CMBs is a challenging...
Cerebral microbleeds (CMBs) are microscopic brain hemorrhages with implications for various diseases. Automated detection of CMBs is a challenging task due to...
BackgroundCerebral microbleeds (CMBs) are microscopic brain hemorrhages with implications for various diseases. Automated detection of CMBs is a challenging...
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SubjectTerms Artificial neural networks
Brain
cerebral microbleeds
CNNs
computer‐aided detection
deep learning
EfficientDet
Field strength
Hemorrhage
Information processing
Magnetic resonance imaging
Neural networks
Sensitivity analysis
Statistical analysis
Statistical tests
susceptibility‐weighted imaging
Title Detection of Cerebral Microbleeds in MR Images Using a Single‐Stage Triplanar Ensemble Detection Network (TPE‐Det)
URI https://onlinelibrary.wiley.com/doi/abs/10.1002%2Fjmri.28487
https://www.ncbi.nlm.nih.gov/pubmed/36285604
https://www.proquest.com/docview/2824336239/abstract/
Volume 58
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