Serum phosphatidylethanolamine levels distinguish benign from malignant solitary pulmonary nodules and represent a potential diagnostic biomarker for lung cancer

BACKGROUND: Recent computed tomography (CT) screening trials showed that it is effective for early detection of lung cancer, but were plagued by high false positive rates. Additional blood biomarker tests designed to complement CT screening and reduce false positive rates are highly desirable. OBJEC...

Full description

Saved in:
Bibliographic Details
Published inCancer biomarkers : section A of Disease markers Vol. 16; no. 4; pp. 609 - 617
Main Authors Fahrmann, Johannes F., Grapov, Dmitry, DeFelice, Brian C., Taylor, Sandra, Kim, Kyoungmi, Kelly, Karen, Wikoff, William R., Pass, Harvey, Rom, William N., Fiehn, Oliver, Miyamoto, Suzanne
Format Journal Article
LanguageEnglish
Published London, England SAGE Publications 13.04.2016
Subjects
Online AccessGet full text

Cover

Loading…
Abstract BACKGROUND: Recent computed tomography (CT) screening trials showed that it is effective for early detection of lung cancer, but were plagued by high false positive rates. Additional blood biomarker tests designed to complement CT screening and reduce false positive rates are highly desirable. OBJECTIVE: Identify blood-based metabolite biomarkers for diagnosing lung cancer. MEHTODS: Serum samples from subjects participating in a CT screening trial were analyzed using untargeted GC-TOFMS and HILIC-qTOFMS-based metabolomics. Samples were acquired prior to diagnosis(pre-diagnostic, n= 17), at-diagnosis (n= 25) and post-diagnosis (n= 19) of lung cancer and from subjects with benign nodules (n= 29). RESULTS: Univariate analysis identified 40, 102 and 30 features which were significantly different between subjects with malignant (pre-, at- and post-diagnosis) solitary pulmonary nodules (SPNs) and benign SPNs, respectively. Ten metabolites were consistently different between subjects presenting malignant (pre- and at-diagnosis) or benign SPNs. Three of these 10 metabolites were phosphatidylethanolamines (PE) suggesting alterations in lipid metabolism. Accuracies of 77%, 83% and 78% in the pre-diagnosis group and 69%, 71% and 67% in the at-diagnosis group were determined for PE(34:2), PE(36:2) and PE(38:4), respectively. CONCLUSIONS: This study demonstrates evidence of early metabolic alterations that can possibly distinguish malignant from benign SPNs. Further studies in larger pools of samples are warranted.
AbstractList Recent computed tomography (CT) screening trials showed that it is effective for early detection of lung cancer, but were plagued by high false positive rates. Additional blood biomarker tests designed to complement CT screening and reduce false positive rates are highly desirable. Identify blood-based metabolite biomarkers for diagnosing lung cancer. Serum samples from subjects participating in a CT screening trial were analyzed using untargeted GC-TOFMS and HILIC-qTOFMS-based metabolomics. Samples were acquired prior to diagnosis (pre-diagnostic, n= 17), at-diagnosis (n= 25) and post-diagnosis (n= 19) of lung cancer and from subjects with benign nodules (n= 29). Univariate analysis identified 40, 102 and 30 features which were significantly different between subjects with malignant (pre-, at- and post-diagnosis) solitary pulmonary nodules (SPNs) and benign SPNs, respectively. Ten metabolites were consistently different between subjects presenting malignant (pre- and at-diagnosis) or benign SPNs. Three of these 10 metabolites were phosphatidylethanolamines (PE) suggesting alterations in lipid metabolism. Accuracies of 77%, 83% and 78% in the pre-diagnosis group and 69%, 71% and 67% in the at-diagnosis group were determined for PE(34:2), PE(36:2) and PE(38:4), respectively. This study demonstrates evidence of early metabolic alterations that can possibly distinguish malignant from benign SPNs. Further studies in larger pools of samples are warranted.
BACKGROUNDRecent computed tomography (CT) screening trials showed that it is effective for early detection of lung cancer, but were plagued by high false positive rates. Additional blood biomarker tests designed to complement CT screening and reduce false positive rates are highly desirable.OBJECTIVEIdentify blood-based metabolite biomarkers for diagnosing lung cancer.MEHTODSSerum samples from subjects participating in a CT screening trial were analyzed using untargeted GC-TOFMS and HILIC-qTOFMS-based metabolomics. Samples were acquired prior to diagnosis (pre-diagnostic, n= 17), at-diagnosis (n= 25) and post-diagnosis (n= 19) of lung cancer and from subjects with benign nodules (n= 29).RESULTSUnivariate analysis identified 40, 102 and 30 features which were significantly different between subjects with malignant (pre-, at- and post-diagnosis) solitary pulmonary nodules (SPNs) and benign SPNs, respectively. Ten metabolites were consistently different between subjects presenting malignant (pre- and at-diagnosis) or benign SPNs. Three of these 10 metabolites were phosphatidylethanolamines (PE) suggesting alterations in lipid metabolism. Accuracies of 77%, 83% and 78% in the pre-diagnosis group and 69%, 71% and 67% in the at-diagnosis group were determined for PE(34:2), PE(36:2) and PE(38:4), respectively.CONCLUSIONSThis study demonstrates evidence of early metabolic alterations that can possibly distinguish malignant from benign SPNs. Further studies in larger pools of samples are warranted.
BACKGROUND: Recent computed tomography (CT) screening trials showed that it is effective for early detection of lung cancer, but were plagued by high false positive rates. Additional blood biomarker tests designed to complement CT screening and reduce false positive rates are highly desirable. OBJECTIVE: Identify blood-based metabolite biomarkers for diagnosing lung cancer. MEHTODS: Serum samples from subjects participating in a CT screening trial were analyzed using untargeted GC-TOFMS and HILIC-qTOFMS-based metabolomics. Samples were acquired prior to diagnosis(pre-diagnostic, n= 17), at-diagnosis (n= 25) and post-diagnosis (n= 19) of lung cancer and from subjects with benign nodules (n= 29). RESULTS: Univariate analysis identified 40, 102 and 30 features which were significantly different between subjects with malignant (pre-, at- and post-diagnosis) solitary pulmonary nodules (SPNs) and benign SPNs, respectively. Ten metabolites were consistently different between subjects presenting malignant (pre- and at-diagnosis) or benign SPNs. Three of these 10 metabolites were phosphatidylethanolamines (PE) suggesting alterations in lipid metabolism. Accuracies of 77%, 83% and 78% in the pre-diagnosis group and 69%, 71% and 67% in the at-diagnosis group were determined for PE(34:2), PE(36:2) and PE(38:4), respectively. CONCLUSIONS: This study demonstrates evidence of early metabolic alterations that can possibly distinguish malignant from benign SPNs. Further studies in larger pools of samples are warranted.
Author Grapov, Dmitry
DeFelice, Brian C.
Fiehn, Oliver
Rom, William N.
Kelly, Karen
Kim, Kyoungmi
Wikoff, William R.
Miyamoto, Suzanne
Fahrmann, Johannes F.
Taylor, Sandra
Pass, Harvey
Author_xml – sequence: 1
  givenname: Johannes F.
  surname: Fahrmann
  fullname: Fahrmann, Johannes F.
  organization: University of California, Davis Genome Center, Davis, California, CA
– sequence: 2
  givenname: Dmitry
  surname: Grapov
  fullname: Grapov, Dmitry
  organization: CDS Creative Data Solutions, Ballwin, MO
– sequence: 3
  givenname: Brian C.
  surname: DeFelice
  fullname: DeFelice, Brian C.
  organization: University of California, Davis Genome Center, Davis, California, CA
– sequence: 4
  givenname: Sandra
  surname: Taylor
  fullname: Taylor, Sandra
  organization: , Davis, California, CA
– sequence: 5
  givenname: Kyoungmi
  surname: Kim
  fullname: Kim, Kyoungmi
  organization: , Davis, California, CA
– sequence: 6
  givenname: Karen
  surname: Kelly
  fullname: Kelly, Karen
  organization: , Davis Medical Center, Sacramento, CA
– sequence: 7
  givenname: William R.
  surname: Wikoff
  fullname: Wikoff, William R.
  organization: University of California, Davis Genome Center, Davis, California, CA
– sequence: 8
  givenname: Harvey
  surname: Pass
  fullname: Pass, Harvey
  organization: , New York, NY
– sequence: 9
  givenname: William N.
  surname: Rom
  fullname: Rom, William N.
  organization: , New York, NY
– sequence: 10
  givenname: Oliver
  surname: Fiehn
  fullname: Fiehn, Oliver
  organization: , Jeddah
– sequence: 11
  givenname: Suzanne
  surname: Miyamoto
  fullname: Miyamoto, Suzanne
  email: smiyamoto@ucdavis.edu
  organization: , Davis Medical Center, Sacramento, CA
BackLink https://www.ncbi.nlm.nih.gov/pubmed/27002763$$D View this record in MEDLINE/PubMed
BookMark eNptkUtv1TAQhS3Uij5gww9A3oGQQv1I4mQJV7ykVl0A62gST3JdHDv4gXR_Dv8UV7ewQF3NWXxzNHPOBTlx3iEhLzh7K4WUV7v3NxVvWcvEE3LOO9VUXdOLk6IbVVeMN_KMXMR4x1gtueifkjOhGBOqlefk91cMeaXb3sdtD8nog8W0B-ctrMYhtfgLbaTaxGTckk3c0xGdWRydg1_pCrZocIlGb02CcKBbtqt398p5nS1GCk7TgFvAiAUEuvlUhAFbbGFxvlhPdDR-hfADA519oDa7hU7gJgzPyOkMNuLzh3lJvn_88G33ubq-_fRl9-66miTvU9WIZsSxbVknZtUJAFn3alZYnq4F9E3d4tSUl0F2LUimma5VL-YRtR5n3oG8JK-PvlvwPzPGNKwmTmgtOPQ5Dlx1sheslaygLx_QPK6ohy2Ycvth-BtrAd4cgSn4GAPO_xDOhvvOhtLZcOyswOw_eCpJJuNdCmDs4yuvjisRFhzufA6uRPMY-Qeshakj
CitedBy_id crossref_primary_10_1155_2018_5276240
crossref_primary_10_1038_s41598_018_28477_9
crossref_primary_10_1002_jssc_201900736
crossref_primary_10_3390_cancers13123012
crossref_primary_10_1016_j_scitotenv_2022_155796
crossref_primary_10_1002_prca_201700086
crossref_primary_10_1016_j_taap_2021_115410
crossref_primary_10_1177_07482337241304166
crossref_primary_10_3390_metabo12070671
crossref_primary_10_1016_j_leukres_2017_01_004
crossref_primary_10_1038_s41467_023_37875_1
crossref_primary_10_1038_s41598_018_25552_z
crossref_primary_10_3892_ol_2018_9047
crossref_primary_10_1002_ar_24767
crossref_primary_10_1016_j_bbalip_2017_03_004
crossref_primary_10_1038_s41598_020_74823_1
crossref_primary_10_1016_j_trac_2019_04_012
crossref_primary_10_1016_j_phrs_2021_105643
crossref_primary_10_1016_j_jtho_2018_11_023
crossref_primary_10_1021_acs_analchem_9b04376
crossref_primary_10_1002_jssc_201600981
crossref_primary_10_1007_s11306_022_01929_0
crossref_primary_10_18632_oncotarget_22404
crossref_primary_10_1016_j_trac_2018_10_013
crossref_primary_10_3390_medsci6040105
crossref_primary_10_3390_nu16060765
crossref_primary_10_1016_j_chest_2023_05_025
crossref_primary_10_3390_jcm12051736
crossref_primary_10_3390_life15020202
Cites_doi 10.1200/JCO.2015.61.7779
10.1093/ajcn/87.4.801
10.1007/978-1-60327-811-9_20
10.1038/nmeth.2551
10.1007/s11745-011-3641-2
10.3322/caac.21254
10.3390/metabo3030539
10.2337/db11-1300
10.1186/1471-2105-12-77
10.1002/ijc.29517
10.1371/journal.pone.0039403
10.1158/1055-9965.EPI-15-0427
10.1093/nar/gkv380
10.1007/11530084_18
10.1097/00075197-200111000-00006
10.1111/j.2517-6161.1995.tb02031.x
10.1158/1078-0432.CCR-08-1059
10.1378/chest.13-2568
10.1002/ssu.2980100106
10.1007/s13277-011-0230-1
10.1258/jms.2011.011055
10.1016/j.critrevonc.2012.02.009
10.3892/ol.2014.2035
10.1016/j.bbrc.2010.03.140
10.1074/jbc.M405147200
10.1186/1471-2105-11-395
10.1016/j.ygeno.2008.07.006
ContentType Journal Article
Copyright IOS Press and the authors. All rights reserved
Copyright_xml – notice: IOS Press and the authors. All rights reserved
DBID AAYXX
CITATION
CGR
CUY
CVF
ECM
EIF
NPM
7X8
DOI 10.3233/CBM-160602
DatabaseName CrossRef
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
MEDLINE - Academic
DatabaseTitle CrossRef
MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
MEDLINE - Academic
DatabaseTitleList MEDLINE
MEDLINE - Academic

Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
Discipline Medicine
EISSN 1875-8592
EndPage 617
ExternalDocumentID 27002763
10_3233_CBM_160602
10.3233_CBM-160602
Genre Journal Article
GrantInformation_xml – fundername: NCI NIH HHS
  grantid: U01 CA086137
GroupedDBID ---
0R~
123
29B
4.4
53G
6J9
AAFNC
ABDBF
ABJNI
ABUBZ
ACGFS
ACPQW
ACPRK
ACUHS
ADZMO
AEGXH
AENEX
AFRAH
AFRHK
AFRWT
AGIAB
ALMA_UNASSIGNED_HOLDINGS
CAG
COF
DU5
EBD
EBS
EJD
EMOBN
ESX
F5P
H13
HZ~
IL9
IOS
J8X
MET
MIO
MV1
NGNOM
O9-
SAUOL
SCNPE
SFC
SV3
TUS
AAYXX
ACHEB
CITATION
CGR
CUY
CVF
ECM
EIF
NPM
7X8
ID FETCH-LOGICAL-c319t-525beb66082f782aa3497f7e00442a9546ec5763a386a30d0d4792fbeddbf18a3
IEDL.DBID AFRWT
ISSN 1574-0153
IngestDate Fri Jul 11 09:04:10 EDT 2025
Thu Jan 02 22:55:26 EST 2025
Thu Apr 24 23:13:09 EDT 2025
Tue Jul 01 05:24:27 EDT 2025
Tue Jun 17 22:30:23 EDT 2025
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 4
Keywords phospholipids
metabolomics
Lung cancer
biomarkers
solitary pulmonary nodules
Language English
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c319t-525beb66082f782aa3497f7e00442a9546ec5763a386a30d0d4792fbeddbf18a3
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
PMID 27002763
PQID 1783920630
PQPubID 23479
PageCount 9
ParticipantIDs proquest_miscellaneous_1783920630
pubmed_primary_27002763
crossref_primary_10_3233_CBM_160602
crossref_citationtrail_10_3233_CBM_160602
sage_journals_10_3233_CBM_160602
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2016-04-13
PublicationDateYYYYMMDD 2016-04-13
PublicationDate_xml – month: 04
  year: 2016
  text: 2016-04-13
  day: 13
PublicationDecade 2010
PublicationPlace London, England
PublicationPlace_xml – name: London, England
– name: Netherlands
PublicationTitle Cancer biomarkers : section A of Disease markers
PublicationTitleAlternate Cancer Biomark
PublicationYear 2016
Publisher SAGE Publications
Publisher_xml – name: SAGE Publications
References Kind, Liu, Lee do, DeFelice, Meissen, Fiehn 2013; 10
2011
Marien, Meister, Muley, Fieuws, Bordel, Derua, Spraggins, Van de Plas, Dehairs, Wouters, Bagadi, Dienemann, Thomas, Schnabel, Caprioli, Waelkens, Swinnen 2015; 137
Murphy, Bureyko, Mourtzakis, Chu, Clandinin, Reiman, Mazurak 2012; 47
Barzilai, Huffman, Muzumdar, Bartke 2012; 61
Ries 1994; 10
Robin, Turck, Hainard, Tiberti, Lisacek, Sanchez, Muller 2011; 12
Gao, Wen, Wu, Wen, Ong 2013; 3
Haeggstrom, Rinaldo-Matthis, Wheelock, Wetterholm 2010; 396
Ghosh, Poisson 2009; 93
Liu, Mazzone, Cata, Kurz, Bauer, Mascha, Sessler 2014; 146
Zinrajh, Horl, Jurgens, Marc, Sok, Cerne 2014; 7
Kramer, Berg, Aberle, Prorok 2011; 18
Fiehn, Wohlgemuth, Scholz 2005; 3615
Benjamini, Hochberg 1995
Blaak 2001; 4
Fahrmann, Kim, DeFelice, Taylor, Gandara, Yoneda, Cooke, Fiehn, Kelly, Miyamoto 2015
Yu, Chen, Wu, Shen, Ji 2011; 32
Wikoff, Hanash, DeFelice, Miyamoto, Barnett, Zhao, Goodman, Feng, Gandara, Fiehn, Taguchi 2015
Scholz, Fiehn 2007
Greenberg, Lu, Goldberg, Eylers, Tsay, Yie, Naidich, McGuinness, Pass, Tchou-Wong, Addrizzo-Harris, Chachoua, Crawford, Rom 2012; 7
Siegel, Miller, Jemal 2015; 65
Huang, Chen, Luo, Jiang, Zhang, Yi 2006; 25
Serkova, Glunde 2009; 520
Spratlin, Serkova, Eckhardt 2009; 15
Claudino, Goncalves, di Leo, Philip, Sarkar 2012; 84
Chiolero, Faeh, Paccaud, Cornuz 2008; 87
Pluskal, Castillo, Villar-Briones, Oresic 2010; 11
Wang, Li, Liu, Sun, Chen, Li, Qiu, Zhang, Wan, Cao 2004; 279
Sim, Poon 2013; 3
Xia, Sinelnikov, Han, Wishart 2015
Robin (10.3233/CBM-160602_ref19) 2011; 12
Chiolero (10.3233/CBM-160602_ref22) 2008; 87
Yu (10.3233/CBM-160602_ref28) 2011; 32
Murphy (10.3233/CBM-160602_ref23) 2012; 47
Kramer (10.3233/CBM-160602_ref3) 2011; 18
Gao (10.3233/CBM-160602_ref26) 2013; 3
Serkova (10.3233/CBM-160602_ref7) 2009; 520
Greenberg (10.3233/CBM-160602_ref4) 2012; 7
10.3233/CBM-160602_ref18
Marien (10.3233/CBM-160602_ref24) 2015; 137
Spratlin (10.3233/CBM-160602_ref8) 2009; 15
10.3233/CBM-160602_ref10
Siegel (10.3233/CBM-160602_ref1) 2015; 65
10.3233/CBM-160602_ref15
Benjamini (10.3233/CBM-160602_ref16) 1995
Liu (10.3233/CBM-160602_ref30) 2014; 146
Scholz (10.3233/CBM-160602_ref11) 2007
Sim (10.3233/CBM-160602_ref32) 2013; 3
Haeggstrom (10.3233/CBM-160602_ref31) 2010; 396
Ries (10.3233/CBM-160602_ref2) 1994; 10
Claudino (10.3233/CBM-160602_ref6) 2012; 84
Blaak (10.3233/CBM-160602_ref20) 2001; 4
Barzilai (10.3233/CBM-160602_ref21) 2012; 61
Wang (10.3233/CBM-160602_ref29) 2004; 279
Ghosh (10.3233/CBM-160602_ref5) 2009; 93
Pluskal (10.3233/CBM-160602_ref13) 2010; 11
Zinrajh (10.3233/CBM-160602_ref25) 2014; 7
Kind (10.3233/CBM-160602_ref14) 2013; 10
Huang (10.3233/CBM-160602_ref27) 2006; 25
Fiehn (10.3233/CBM-160602_ref12) 2005; 3615
10.3233/CBM-160602_ref9
References_xml – volume: 520
  start-page: 273
  year: 2009
  end-page: 95
  article-title: Metabolomics of cancer
  publication-title: Methods Mol Biol
– volume: 87
  start-page: 801
  year: 2008
  end-page: 9
  article-title: Consequences of smoking for body weight, body fat distribution, and insulin resistance
  publication-title: Am J Clin Nutr
– volume: 146
  start-page: 670
  year: 2014
  end-page: 9
  article-title: Serum free fatty acid biomarkers of lung cancer
  publication-title: Chest
– volume: 61
  start-page: 1315
  year: 2012
  end-page: 22
  article-title: The critical role of metabolic pathways in aging
  publication-title: Diabetes
– volume: 25
  start-page: 1361
  year: 2006
  end-page: 7
  article-title: Proteomic analysis of secreted proteins of non-small cell lung cancer
  publication-title: Ai Zheng
– year: 2015
  article-title: Investigation of Metabolomic Blood Biomarkers for Detection of Adenocarcinoma Lung Cancer
  publication-title: Cancer Epidemiol Biomarkers Prev
– volume: 32
  start-page: 1257
  year: 2011
  end-page: 63
  article-title: The expression of PEBP4 protein in lung squamous cell carcinoma
  publication-title: Tumour Biol
– year: 2011
  article-title: R: A language and environment for statistical computing
  publication-title: R Foundation for Statistical Computing
– volume: 84
  start-page: 1
  year: 2012
  end-page: 7
  article-title: Metabolomics in cancer: a bench-to-bedside intersection
  publication-title: Crit Rev Oncol Hematol
– volume: 10
  start-page: 755
  year: 2013
  end-page: 8
  article-title: LipidBlast in silico tandem mass spectrometry database for lipid identification
  publication-title: Nat Methods
– volume: 47
  start-page: 363
  year: 2012
  end-page: 9
  article-title: Aberrations in plasma phospholipid fatty acids in lung cancer patients
  publication-title: Lipids
– volume: 137
  start-page: 1539
  year: 2015
  end-page: 48
  article-title: Non-small cell lung cancer is characterized by dramatic changes in phospholipid profiles
  publication-title: Int J Cancer
– volume: 4
  start-page: 499
  year: 2001
  end-page: 502
  article-title: Gender differences in fat metabolism
  publication-title: Curr Opin Clin Nutr Metab Care
– volume: 18
  start-page: 109
  year: 2011
  end-page: 11
  article-title: Lung cancer screening with low-dose helical CT: results from the National Lung Screening Trial (NLST)
  publication-title: J Med Screen
– volume: 396
  start-page: 135
  year: 2010
  end-page: 9
  article-title: Advances in eicosanoid research, novel therapeutic implications
  publication-title: Biochem Biophys Res Commun
– volume: 15
  start-page: 431
  year: 2009
  end-page: 40
  article-title: Clinical applications of metabolomics in oncology: a review
  publication-title: Clin Cancer Res
– volume: 279
  start-page: 45855
  year: 2004
  end-page: 64
  article-title: A novel human phosphatidyleth-anolamine-binding protein resists tumor necrosis factor alpha-induced apoptosis by inhibiting mitogen-activated protein kinase pathway activation and phosphatidylethanolamine externalization
  publication-title: J Biol Chem
– volume: 3
  start-page: 316
  year: 2013
  end-page: 26
  article-title: Imaging of solitary pulmonary nodule-a clinical review
  publication-title: Quant Imaging Med Surg
– start-page: 289
  year: 1995
  end-page: 300
  article-title: Controlling the false discovery rate: a practical and powerful approach to multiple testing
  publication-title: Journal of the Royal Statistical Society. Series B (Methodological)
– volume: 65
  start-page: 5
  year: 2015
  end-page: 29
  article-title: Cancer statistics, 2015
  publication-title: CA Cancer J Clin
– volume: 3615
  start-page: 224
  year: 2005
  end-page: 239
  article-title: Setup and annotation of metabolomic experiments by integrating biological and mass spectrometric metadata
  publication-title: Data Integration in the Life Sciences, Proceedings
– volume: 7
  start-page: 2175
  year: 2014
  end-page: 2179
  article-title: Increased phosphatidylethanolamine N-methyltr-ansferase gene expression in non-small-cell lung cancer tissue predicts shorter patient survival
  publication-title: Oncol Lett
– volume: 3
  start-page: 539
  year: 2013
  end-page: 51
  article-title: Metabolic profiling of plasma from benign and malignant pulmonary nodules patients using mass spectrometry-based metabolomics
  publication-title: Metabolites
– volume: 11
  start-page: 395
  year: 2010
  article-title: MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
  publication-title: BMC Bioinformatics
– volume: 93
  start-page: 13
  year: 2009
  end-page: 6
  article-title: ``Omics'' data and levels of evidence for biomarker discovery
  publication-title: Genomics
– year: 2015
  article-title: Diacetylspermine is a Novel Prediagnostic Serum Biomarker for Non-Small-Cell Lung Cancer and Has Additive Performance With Pro-Surfactant Protein B
  publication-title: J Clin Oncol
– volume: 10
  start-page: 21
  year: 1994
  end-page: 30
  article-title: Influence of extent of disease, histology, and demographic factors on lung cancer survival in the SEER population-based data
  publication-title: Semin Surg Oncol
– volume: 12
  start-page: 77
  year: 2011
  article-title: pROC: an open-source package for R and S+ to analyze and compare ROC curves
  publication-title: BMC Bioinformatics
– volume: 7
  start-page: e39403
  year: 2012
  article-title: CT scan screening for lung cancer: risk factors for nodules and malignancy in a high-risk urban cohort
  publication-title: PLoS One
– start-page: 169
  year: 2007
  end-page: 80
  article-title: SetupX-a public study design database for metabolomic projects
  publication-title: Pac Symp Biocomput
– year: 2015
  article-title: MetaboAnalyst 3.0-making metabolomics more meaningful
  publication-title: Nucleic Acids Res
– ident: 10.3233/CBM-160602_ref10
  doi: 10.1200/JCO.2015.61.7779
– volume: 87
  start-page: 801
  year: 2008
  ident: 10.3233/CBM-160602_ref22
  article-title: Consequences of smoking for body weight, body fat distribution, and insulin resistance
  publication-title: Am J Clin Nutr
  doi: 10.1093/ajcn/87.4.801
– volume: 3
  start-page: 316
  year: 2013
  ident: 10.3233/CBM-160602_ref32
  article-title: Imaging of solitary pulmonary nodule-a clinical review
  publication-title: Quant Imaging Med Surg
– volume: 520
  start-page: 273
  year: 2009
  ident: 10.3233/CBM-160602_ref7
  article-title: Metabolomics of cancer
  publication-title: Methods Mol Biol
  doi: 10.1007/978-1-60327-811-9_20
– volume: 10
  start-page: 755
  year: 2013
  ident: 10.3233/CBM-160602_ref14
  article-title: LipidBlast in silico tandem mass spectrometry database for lipid identification
  publication-title: Nat Methods
  doi: 10.1038/nmeth.2551
– volume: 47
  start-page: 363
  year: 2012
  ident: 10.3233/CBM-160602_ref23
  article-title: Aberrations in plasma phospholipid fatty acids in lung cancer patients
  publication-title: Lipids
  doi: 10.1007/s11745-011-3641-2
– volume: 65
  start-page: 5
  year: 2015
  ident: 10.3233/CBM-160602_ref1
  article-title: Cancer statistics, 2015
  publication-title: CA Cancer J Clin
  doi: 10.3322/caac.21254
– start-page: 169
  year: 2007
  ident: 10.3233/CBM-160602_ref11
  article-title: SetupX-a public study design database for metabolomic projects
  publication-title: Pac Symp Biocomput
– volume: 3
  start-page: 539
  year: 2013
  ident: 10.3233/CBM-160602_ref26
  article-title: Metabolic profiling of plasma from benign and malignant pulmonary nodules patients using mass spectrometry-based metabolomics
  publication-title: Metabolites
  doi: 10.3390/metabo3030539
– volume: 61
  start-page: 1315
  year: 2012
  ident: 10.3233/CBM-160602_ref21
  article-title: The critical role of metabolic pathways in aging
  publication-title: Diabetes
  doi: 10.2337/db11-1300
– volume: 12
  start-page: 77
  year: 2011
  ident: 10.3233/CBM-160602_ref19
  article-title: pROC: an open-source package for R and S+ to analyze and compare ROC curves
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-12-77
– volume: 137
  start-page: 1539
  year: 2015
  ident: 10.3233/CBM-160602_ref24
  article-title: Non-small cell lung cancer is characterized by dramatic changes in phospholipid profiles
  publication-title: Int J Cancer
  doi: 10.1002/ijc.29517
– volume: 7
  start-page: e39403
  year: 2012
  ident: 10.3233/CBM-160602_ref4
  article-title: CT scan screening for lung cancer: risk factors for nodules and malignancy in a high-risk urban cohort
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0039403
– ident: 10.3233/CBM-160602_ref9
  doi: 10.1158/1055-9965.EPI-15-0427
– ident: 10.3233/CBM-160602_ref18
  doi: 10.1093/nar/gkv380
– volume: 3615
  start-page: 224
  year: 2005
  ident: 10.3233/CBM-160602_ref12
  article-title: Setup and annotation of metabolomic experiments by integrating biological and mass spectrometric metadata
  publication-title: Data Integration in the Life Sciences, Proceedings
  doi: 10.1007/11530084_18
– volume: 4
  start-page: 499
  year: 2001
  ident: 10.3233/CBM-160602_ref20
  article-title: Gender differences in fat metabolism
  publication-title: Curr Opin Clin Nutr Metab Care
  doi: 10.1097/00075197-200111000-00006
– volume: 25
  start-page: 1361
  year: 2006
  ident: 10.3233/CBM-160602_ref27
  article-title: Proteomic analysis of secreted proteins of non-small cell lung cancer
  publication-title: Ai Zheng
– start-page: 289
  year: 1995
  ident: 10.3233/CBM-160602_ref16
  article-title: Controlling the false discovery rate: a practical and powerful approach to multiple testing
  publication-title: Journal of the Royal Statistical Society. Series B (Methodological)
  doi: 10.1111/j.2517-6161.1995.tb02031.x
– volume: 15
  start-page: 431
  year: 2009
  ident: 10.3233/CBM-160602_ref8
  article-title: Clinical applications of metabolomics in oncology: a review
  publication-title: Clin Cancer Res
  doi: 10.1158/1078-0432.CCR-08-1059
– ident: 10.3233/CBM-160602_ref15
– volume: 146
  start-page: 670
  year: 2014
  ident: 10.3233/CBM-160602_ref30
  article-title: Serum free fatty acid biomarkers of lung cancer
  publication-title: Chest
  doi: 10.1378/chest.13-2568
– volume: 10
  start-page: 21
  year: 1994
  ident: 10.3233/CBM-160602_ref2
  article-title: Influence of extent of disease, histology, and demographic factors on lung cancer survival in the SEER population-based data
  publication-title: Semin Surg Oncol
  doi: 10.1002/ssu.2980100106
– volume: 32
  start-page: 1257
  year: 2011
  ident: 10.3233/CBM-160602_ref28
  article-title: The expression of PEBP4 protein in lung squamous cell carcinoma
  publication-title: Tumour Biol
  doi: 10.1007/s13277-011-0230-1
– volume: 18
  start-page: 109
  year: 2011
  ident: 10.3233/CBM-160602_ref3
  article-title: Lung cancer screening with low-dose helical CT: results from the National Lung Screening Trial (NLST)
  publication-title: J Med Screen
  doi: 10.1258/jms.2011.011055
– volume: 84
  start-page: 1
  year: 2012
  ident: 10.3233/CBM-160602_ref6
  article-title: Metabolomics in cancer: a bench-to-bedside intersection
  publication-title: Crit Rev Oncol Hematol
  doi: 10.1016/j.critrevonc.2012.02.009
– volume: 7
  start-page: 2175
  year: 2014
  ident: 10.3233/CBM-160602_ref25
  article-title: Increased phosphatidylethanolamine N-methyltr-ansferase gene expression in non-small-cell lung cancer tissue predicts shorter patient survival
  publication-title: Oncol Lett
  doi: 10.3892/ol.2014.2035
– volume: 396
  start-page: 135
  year: 2010
  ident: 10.3233/CBM-160602_ref31
  article-title: Advances in eicosanoid research, novel therapeutic implications
  publication-title: Biochem Biophys Res Commun
  doi: 10.1016/j.bbrc.2010.03.140
– volume: 279
  start-page: 45855
  year: 2004
  ident: 10.3233/CBM-160602_ref29
  article-title: A novel human phosphatidyleth-anolamine-binding protein resists tumor necrosis factor alpha-induced apoptosis by inhibiting mitogen-activated protein kinase pathway activation and phosphatidylethanolamine externalization
  publication-title: J Biol Chem
  doi: 10.1074/jbc.M405147200
– volume: 11
  start-page: 395
  year: 2010
  ident: 10.3233/CBM-160602_ref13
  article-title: MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-11-395
– volume: 93
  start-page: 13
  year: 2009
  ident: 10.3233/CBM-160602_ref5
  article-title: ``Omics'' data and levels of evidence for biomarker discovery
  publication-title: Genomics
  doi: 10.1016/j.ygeno.2008.07.006
SSID ssj0043129
Score 2.2492118
Snippet BACKGROUND: Recent computed tomography (CT) screening trials showed that it is effective for early detection of lung cancer, but were plagued by high false...
Recent computed tomography (CT) screening trials showed that it is effective for early detection of lung cancer, but were plagued by high false positive rates....
BACKGROUNDRecent computed tomography (CT) screening trials showed that it is effective for early detection of lung cancer, but were plagued by high false...
SourceID proquest
pubmed
crossref
sage
SourceType Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 609
SubjectTerms Aged
Biomarkers, Tumor
Diagnosis, Differential
Female
Humans
Lung Neoplasms - blood
Lung Neoplasms - diagnosis
Lung Neoplasms - genetics
Lung Neoplasms - metabolism
Male
Metabolome
Metabolomics - methods
Middle Aged
Neoplasm Staging
Phosphatidylethanolamines - blood
ROC Curve
Solitary Pulmonary Nodule - genetics
Solitary Pulmonary Nodule - metabolism
Solitary Pulmonary Nodule - pathology
Title Serum phosphatidylethanolamine levels distinguish benign from malignant solitary pulmonary nodules and represent a potential diagnostic biomarker for lung cancer
URI https://journals.sagepub.com/doi/full/10.3233/CBM-160602
https://www.ncbi.nlm.nih.gov/pubmed/27002763
https://www.proquest.com/docview/1783920630
Volume 16
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwhV1Na9wwEBVpAqWX0u9u0oYp7aUHt2vLku1TyaZdQmF7KAnNzUiWvA7Yslnbh_05-aeZWduBNIHcjBGW0MxIbzxvZhj7EkiLoMOim6pN5uF9G3pKiMhTiY0SoQNpBOU7r_7Is4vw96W43GPFlAsz7mD7jWhVuKLdYU3WTX-jycR5wPn308XK8xF6z4MffVelw3_uqZ0GvaHAdF9RTDsjJuTWm_LanrCDIJICTfjgZPn33_l0auM9uuto5ouIWBmCD6VM_5vt7uV1D5HeYYPtLqjlC_Z8RJZwMqjCS7Zn3Sv2dDXGzl-zazwW-gqaom6bAuVhtiiyQjn0bSscACXRh1owZPRu3V-1BWjrrtYOKAUFKgTsa2LNQEuUObXZQtOXuBP05GrTl7YF5QzsymRSShMoaOqO2Ei4LDNQ-nBtQBn_RAraAAJmKPG0gYx0b_OGXSx_nZ-eeWODBi9Dy-3QiRXaaikRRuSINJTiYRLlkaUocaASEUqboT_DFY-l4nMzN2GUBLm2xujcjxV_y_Zd7ex7BlwopVWe6TjOQq1tHGSBDjXi05zc6GTGvk47n2Zj9XJqolGm6MWQlFKUUjpIacY-345thpodD476NAkwRZOiOIlytu7b1I8INVIxshl7N0j29jsUp0cF4jMGJOp00tcHJjh8fMgRe4YATFJ0yucf2H636e1HBDmdPkb9XPxcLI9HPb0B1Tj_vg
linkProvider SAGE Publications
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwhV1LT9tAEB5VQWp7qSi0JX0xFVx6cIu9Xj-OFBEFSjigoHKzdr3rBMlZW3F84Of0nzITO0hQpN5ymNjrmZ2dbzTfzAIcBpEl0GEpTdUm9yjehp6SMvZUauNU6iAykvudJ5fR-Do8v5E3fR8398L0Gmx-MK2KVrQ-rHvvFoEQP09-TTyfUDcPkNwKOVwNYOt4dPVnujmAKSSuLyfzZcwECym6qaRP_v04Dv0DLh8Ru9axZrQNb3qQiMedVd_CC-t24OWkL4Pvwl_y8HaB9bxq6jmp1tyR9ufKUZq6IAEsmQnUoGH_dbP2tpmjtu525pC7SXBB2HvGBBhsmP2mlndYtyXtR_7lKtOWtkHlDK4nXnJ3EiqsqxUTi2hZpmPn0dqQm_eZ37NEwr5Y0sGBOW-j5Tu4Hp1OT8Zef9eCl5MTrigfldrqKCJEUBBoUEqEaVzElgu-gUplGNmcUhOhRBIpcWSOTBinQaGtMbrwEyXew8BVzu4BCqmUVkWukyQPtbZJkAc61AQ1C86I0yF832g-y_tB5HwfRplRQsJWyshKWWelIRw8yNbd-I1npb5tDJiRd3DJQzlbtU3mxwwAea7YED50ln14DpfcA_qkISCbOttsvWde8PH_IvvwajydXGQXZ5e_P8FrwlURF5188RkGq2VrvxB2Wemv_V69B9Fo67U
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwhV1Lb9QwEB5VW6nigoAWWJ6DyqWHQBPbeRxLYdUCW6GqFb1FduzsVso60WZz6M_hnzKzyVYqVOoth0nieDyebzLfjAE-RrEj0OEoTDW2CMjfykArlQQ6c0mmTBRbxfXO07P45FJ-v1JXw68LroUZZrD9xLQqGtF6s2brbmzJFi4iIT4ff5kGISFvbiK5LSU5xRFsH03Of19sNmFyi-sDykKVMMlCib4z6T933_VF_wHMO-Sutb-ZPIHHA1DEo16zT2HL-WewMx1S4bvwh6y8W2Azr9tmTtNrb0gDc-0pVF2QAFbMBmrRsg37WXfdztE4fz3zyBUluCD8PWMSDLbMgNPLG2y6itYkX_nadpVrUXuL666XXKGEGpt6xeQiGpbtGXo0NuQCfub4LJHwL1a0eWDBS2m5B5eTbxfHJ8Fw3kJQkCGuKCZVxpk4JlRQEnDQWsgsKRPHSd9IZ0rGrqDwRGiRxloc2kMrkywqjbPWlGGqxXMY-dq7l4BCaW10WZg0LaQxLo2KyEhDcLPkqDgbw8Fm5vNiaEbOZ2JUOQUlrKWctJT3WhrD_q1s07fguFfqw0aBOVkIpz20d3XX5mHCIJB7i43hRa_Z2-dw2j2iTxoDsqrzzfK75wWvHhZ5Dzu_vk7yn6dnP17DI4JWMeedQvEGRqtl594SfFmZd8NS_QtD2uzF
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Serum+phosphatidylethanolamine+levels+distinguish+benign+from+malignant+solitary+pulmonary+nodules+and+represent+a+potential+diagnostic+biomarker+for+lung+cancer&rft.jtitle=Cancer+biomarkers+%3A+section+A+of+Disease+markers&rft.au=Fahrmann%2C+Johannes+F&rft.au=Grapov%2C+Dmitry&rft.au=DeFelice%2C+Brian+C&rft.au=Taylor%2C+Sandra&rft.date=2016-04-13&rft.eissn=1875-8592&rft.volume=16&rft.issue=4&rft.spage=609&rft_id=info:doi/10.3233%2FCBM-160602&rft_id=info%3Apmid%2F27002763&rft.externalDocID=27002763
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1574-0153&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1574-0153&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1574-0153&client=summon