Target capture sequencing for phylogenomic and population studies in the Southeast Asian genus Palaquium (Sapotaceae)
Abstract The first phylogenomic study using a custom target capture bait panel within the Isonandreae tribe in Sapotaceae is presented. The combination of taxon-specific and universal loci from the Angiosperms353 probe set achieved high species resolution within the genus Palaquium and provides the...
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| Published in | Botanical journal of the Linnean Society Vol. 203; no. 2; pp. 134 - 147 |
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| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
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UK
Oxford University Press
03.10.2023
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| Abstract | Abstract
The first phylogenomic study using a custom target capture bait panel within the Isonandreae tribe in Sapotaceae is presented. The combination of taxon-specific and universal loci from the Angiosperms353 probe set achieved high species resolution within the genus Palaquium and provides the first phylogenomic insights into Malesian representatives of Sapotaceae, where relationships between taxa often remain poorly understood. The results highlight that generic and some species circumscriptions require further investigation and possible revision: Aulandra longifolia is found to be nested in Palaquium, and P. rostratum within P. microphyllum. Population structure analysis produced limited resolution between and within species, but the bait set was able to recover parameters that are potentially useful in population genomic studies. |
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| AbstractList | The first phylogenomic study using a custom target capture bait panel within the Isonandreae tribe in Sapotaceae is presented. The combination of taxon-specific and universal loci from the Angiosperms353 probe set achieved high species resolution within the genus Palaquium and provides the first phylogenomic insights into Malesian representatives of Sapotaceae, where relationships between taxa often remain poorly understood. The results highlight that generic and some species circumscriptions require further investigation and possible revision: Aulandra longifolia is found to be nested in Palaquium, and P. rostratum within P. microphyllum. Population structure analysis produced limited resolution between and within species, but the bait set was able to recover parameters that are potentially useful in population genomic studies. Abstract The first phylogenomic study using a custom target capture bait panel within the Isonandreae tribe in Sapotaceae is presented. The combination of taxon-specific and universal loci from the Angiosperms353 probe set achieved high species resolution within the genus Palaquium and provides the first phylogenomic insights into Malesian representatives of Sapotaceae, where relationships between taxa often remain poorly understood. The results highlight that generic and some species circumscriptions require further investigation and possible revision: Aulandra longifolia is found to be nested in Palaquium, and P. rostratum within P. microphyllum. Population structure analysis produced limited resolution between and within species, but the bait set was able to recover parameters that are potentially useful in population genomic studies. |
| Author | Middleton, David J Phang, Aireen Wilkie, Peter Burslem, David F R P Khew, Gillian S Pezzini, Flávia Fonseca Ruhsam, Markus |
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| CitedBy_id | crossref_primary_10_1002_ppp3_10607 crossref_primary_10_1007_s10531_024_02870_5 crossref_primary_10_1002_aps3_11580 crossref_primary_10_1007_s44281_023_00026_z crossref_primary_10_1016_j_ympev_2024_108277 |
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| Keywords | population genomics Southeast Asia target capture Sapotaceae molecular systematics |
| Language | English |
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The first phylogenomic study using a custom target capture bait panel within the Isonandreae tribe in Sapotaceae is presented. The combination of... The first phylogenomic study using a custom target capture bait panel within the Isonandreae tribe in Sapotaceae is presented. The combination of... |
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| SubjectTerms | Baits Genomic analysis Palaquium Population structure Population studies Population-based studies Sapotaceae Structural analysis Taxa Taxonomic revision |
| Title | Target capture sequencing for phylogenomic and population studies in the Southeast Asian genus Palaquium (Sapotaceae) |
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