Associations between cuprotosis‐related genes and the spectrum of metabolic dysfunction‐associated fatty liver disease: An exploratory study
Aims To explore the associations between cuprotosis‐related genes (CRGs) across different stages of liver disease in metabolic dysfunction‐associated fatty liver disease (MAFLD), including hepatocellular carcinoma (HCC). Materials and Methods We analysed several bulk RNA sequencing datasets from pat...
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Published in | Diabetes, obesity & metabolism Vol. 26; no. 12; pp. 5757 - 5775 |
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Main Authors | , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
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Oxford, UK
Blackwell Publishing Ltd
01.12.2024
Wiley Subscription Services, Inc |
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Abstract | Aims
To explore the associations between cuprotosis‐related genes (CRGs) across different stages of liver disease in metabolic dysfunction‐associated fatty liver disease (MAFLD), including hepatocellular carcinoma (HCC).
Materials and Methods
We analysed several bulk RNA sequencing datasets from patients with MAFLD (n = 331) and MAFLD‐related HCC (n = 271) and two MAFLD single‐cell RNA sequencing datasets. To investigate the associations between CRGs and MAFLD, we performed differential correlation, logistic regression and functional enrichment analyses. We also validated the findings in an independent Wenzhou PERSONS cohort of MAFLD patients (n = 656) used for a genome‐wide association study (GWAS).
Results
GLS, GCSH and ATP7B genes showed significant differences across the MAFLD spectrum and were significantly associated with liver fibrosis stages. GLS was closely associated with fibrosis stages in patients with MAFLD and those with MAFLD‐related HCC. GLS is predominantly expressed in monocytes and T cells in MAFLD. During the progression of metabolic dysfunction‐associated fatty liver to metabolic‐associated steatohepatitis, GLS expression in T cells decreased. GWAS revealed that multiple single nucleotide polymorphisms in GLS were associated with clinical indicators of MAFLD.
Conclusions
GLS may contribute to liver inflammation and fibrosis in MAFLD mainly through cuprotosis and T‐cell activation, promoting the progression of MAFLD to HCC. These findings suggest that cuprotosis may play a role in MAFLD progression, potentially providing new insights into MAFLD pathogenesis. |
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AbstractList | To explore the associations between cuprotosis-related genes (CRGs) across different stages of liver disease in metabolic dysfunction-associated fatty liver disease (MAFLD), including hepatocellular carcinoma (HCC).
We analysed several bulk RNA sequencing datasets from patients with MAFLD (n = 331) and MAFLD-related HCC (n = 271) and two MAFLD single-cell RNA sequencing datasets. To investigate the associations between CRGs and MAFLD, we performed differential correlation, logistic regression and functional enrichment analyses. We also validated the findings in an independent Wenzhou PERSONS cohort of MAFLD patients (n = 656) used for a genome-wide association study (GWAS).
GLS, GCSH and ATP7B genes showed significant differences across the MAFLD spectrum and were significantly associated with liver fibrosis stages. GLS was closely associated with fibrosis stages in patients with MAFLD and those with MAFLD-related HCC. GLS is predominantly expressed in monocytes and T cells in MAFLD. During the progression of metabolic dysfunction-associated fatty liver to metabolic-associated steatohepatitis, GLS expression in T cells decreased. GWAS revealed that multiple single nucleotide polymorphisms in GLS were associated with clinical indicators of MAFLD.
GLS may contribute to liver inflammation and fibrosis in MAFLD mainly through cuprotosis and T-cell activation, promoting the progression of MAFLD to HCC. These findings suggest that cuprotosis may play a role in MAFLD progression, potentially providing new insights into MAFLD pathogenesis. AimsTo explore the associations between cuprotosis‐related genes (CRGs) across different stages of liver disease in metabolic dysfunction‐associated fatty liver disease (MAFLD), including hepatocellular carcinoma (HCC).Materials and MethodsWe analysed several bulk RNA sequencing datasets from patients with MAFLD (n = 331) and MAFLD‐related HCC (n = 271) and two MAFLD single‐cell RNA sequencing datasets. To investigate the associations between CRGs and MAFLD, we performed differential correlation, logistic regression and functional enrichment analyses. We also validated the findings in an independent Wenzhou PERSONS cohort of MAFLD patients (n = 656) used for a genome‐wide association study (GWAS).ResultsGLS, GCSH and ATP7B genes showed significant differences across the MAFLD spectrum and were significantly associated with liver fibrosis stages. GLS was closely associated with fibrosis stages in patients with MAFLD and those with MAFLD‐related HCC. GLS is predominantly expressed in monocytes and T cells in MAFLD. During the progression of metabolic dysfunction‐associated fatty liver to metabolic‐associated steatohepatitis, GLS expression in T cells decreased. GWAS revealed that multiple single nucleotide polymorphisms in GLS were associated with clinical indicators of MAFLD.ConclusionsGLS may contribute to liver inflammation and fibrosis in MAFLD mainly through cuprotosis and T‐cell activation, promoting the progression of MAFLD to HCC. These findings suggest that cuprotosis may play a role in MAFLD progression, potentially providing new insights into MAFLD pathogenesis. Aims To explore the associations between cuprotosis‐related genes (CRGs) across different stages of liver disease in metabolic dysfunction‐associated fatty liver disease (MAFLD), including hepatocellular carcinoma (HCC). Materials and Methods We analysed several bulk RNA sequencing datasets from patients with MAFLD (n = 331) and MAFLD‐related HCC (n = 271) and two MAFLD single‐cell RNA sequencing datasets. To investigate the associations between CRGs and MAFLD, we performed differential correlation, logistic regression and functional enrichment analyses. We also validated the findings in an independent Wenzhou PERSONS cohort of MAFLD patients (n = 656) used for a genome‐wide association study (GWAS). Results GLS, GCSH and ATP7B genes showed significant differences across the MAFLD spectrum and were significantly associated with liver fibrosis stages. GLS was closely associated with fibrosis stages in patients with MAFLD and those with MAFLD‐related HCC. GLS is predominantly expressed in monocytes and T cells in MAFLD. During the progression of metabolic dysfunction‐associated fatty liver to metabolic‐associated steatohepatitis, GLS expression in T cells decreased. GWAS revealed that multiple single nucleotide polymorphisms in GLS were associated with clinical indicators of MAFLD. Conclusions GLS may contribute to liver inflammation and fibrosis in MAFLD mainly through cuprotosis and T‐cell activation, promoting the progression of MAFLD to HCC. These findings suggest that cuprotosis may play a role in MAFLD progression, potentially providing new insights into MAFLD pathogenesis. To explore the associations between cuprotosis-related genes (CRGs) across different stages of liver disease in metabolic dysfunction-associated fatty liver disease (MAFLD), including hepatocellular carcinoma (HCC).AIMSTo explore the associations between cuprotosis-related genes (CRGs) across different stages of liver disease in metabolic dysfunction-associated fatty liver disease (MAFLD), including hepatocellular carcinoma (HCC).We analysed several bulk RNA sequencing datasets from patients with MAFLD (n = 331) and MAFLD-related HCC (n = 271) and two MAFLD single-cell RNA sequencing datasets. To investigate the associations between CRGs and MAFLD, we performed differential correlation, logistic regression and functional enrichment analyses. We also validated the findings in an independent Wenzhou PERSONS cohort of MAFLD patients (n = 656) used for a genome-wide association study (GWAS).MATERIALS AND METHODSWe analysed several bulk RNA sequencing datasets from patients with MAFLD (n = 331) and MAFLD-related HCC (n = 271) and two MAFLD single-cell RNA sequencing datasets. To investigate the associations between CRGs and MAFLD, we performed differential correlation, logistic regression and functional enrichment analyses. We also validated the findings in an independent Wenzhou PERSONS cohort of MAFLD patients (n = 656) used for a genome-wide association study (GWAS).GLS, GCSH and ATP7B genes showed significant differences across the MAFLD spectrum and were significantly associated with liver fibrosis stages. GLS was closely associated with fibrosis stages in patients with MAFLD and those with MAFLD-related HCC. GLS is predominantly expressed in monocytes and T cells in MAFLD. During the progression of metabolic dysfunction-associated fatty liver to metabolic-associated steatohepatitis, GLS expression in T cells decreased. GWAS revealed that multiple single nucleotide polymorphisms in GLS were associated with clinical indicators of MAFLD.RESULTSGLS, GCSH and ATP7B genes showed significant differences across the MAFLD spectrum and were significantly associated with liver fibrosis stages. GLS was closely associated with fibrosis stages in patients with MAFLD and those with MAFLD-related HCC. GLS is predominantly expressed in monocytes and T cells in MAFLD. During the progression of metabolic dysfunction-associated fatty liver to metabolic-associated steatohepatitis, GLS expression in T cells decreased. GWAS revealed that multiple single nucleotide polymorphisms in GLS were associated with clinical indicators of MAFLD.GLS may contribute to liver inflammation and fibrosis in MAFLD mainly through cuprotosis and T-cell activation, promoting the progression of MAFLD to HCC. These findings suggest that cuprotosis may play a role in MAFLD progression, potentially providing new insights into MAFLD pathogenesis.CONCLUSIONSGLS may contribute to liver inflammation and fibrosis in MAFLD mainly through cuprotosis and T-cell activation, promoting the progression of MAFLD to HCC. These findings suggest that cuprotosis may play a role in MAFLD progression, potentially providing new insights into MAFLD pathogenesis. |
Author | Li, Gang Yuan, Hai‐Yang Li, Ke Chen, Sui‐Dan Wang, Fudi Zhang, Xin‐Lei Zhou, Meng Song, Zi‐Jun Zheng, Ming‐Hua Tian, Na Liu, Wen‐Yue Jin, Xin‐Zhe Chen, Li‐Li Targher, Giovanni George, Jacob Feng, Gong Byrne, Christopher D. |
Author_xml | – sequence: 1 givenname: Hai‐Yang orcidid: 0009-0009-8648-7625 surname: Yuan fullname: Yuan, Hai‐Yang organization: the First Affiliated Hospital of Wenzhou Medical University – sequence: 2 givenname: Wen‐Yue surname: Liu fullname: Liu, Wen‐Yue organization: the First Affiliated Hospital of Wenzhou Medical University – sequence: 3 givenname: Gong orcidid: 0000-0001-5394-0029 surname: Feng fullname: Feng, Gong organization: Xi'an Medical University – sequence: 4 givenname: Sui‐Dan surname: Chen fullname: Chen, Sui‐Dan organization: the First Affiliated Hospital of Wenzhou Medical University – sequence: 5 givenname: Xin‐Zhe surname: Jin fullname: Jin, Xin‐Zhe organization: the First Affiliated Hospital of Wenzhou Medical University – sequence: 6 givenname: Li‐Li surname: Chen fullname: Chen, Li‐Li organization: the First Affiliated Hospital of Wenzhou Medical University – sequence: 7 givenname: Zi‐Jun surname: Song fullname: Song, Zi‐Jun organization: Zhejiang University School of Medicine – sequence: 8 givenname: Ke surname: Li fullname: Li, Ke organization: Wenzhou Medical University – sequence: 9 givenname: Christopher D. orcidid: 0000-0001-6322-7753 surname: Byrne fullname: Byrne, Christopher D. organization: Southampton General Hospital – sequence: 10 givenname: Giovanni orcidid: 0000-0002-4325-3900 surname: Targher fullname: Targher, Giovanni organization: IRCCS Sacro Cuore‐Don Calabria Hospital – sequence: 11 givenname: Na surname: Tian fullname: Tian, Na organization: the First Affiliated Hospital of Wenzhou Medical University – sequence: 12 givenname: Gang surname: Li fullname: Li, Gang organization: Jining No.1 People's Hospital – sequence: 13 givenname: Xin‐Lei surname: Zhang fullname: Zhang, Xin‐Lei organization: the First Affiliated Hospital of Wenzhou Medical University – sequence: 14 givenname: Jacob surname: George fullname: George, Jacob organization: Westmead Hospital and University of Sydney – sequence: 15 givenname: Meng surname: Zhou fullname: Zhou, Meng organization: Wenzhou Medical University – sequence: 16 givenname: Fudi orcidid: 0000-0001-8730-0003 surname: Wang fullname: Wang, Fudi email: fwang@zju.edu.cn organization: Zhejiang University School of Medicine – sequence: 17 givenname: Ming‐Hua orcidid: 0000-0003-4984-2631 surname: Zheng fullname: Zheng, Ming‐Hua email: zhengmh@wmu.edu.cn organization: Key Laboratory of Diagnosis and Treatment for The Development of Chronic Liver Disease in Zhejiang Province |
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Keywords | metabolic dysfunction‐associated fatty liver disease sing‐cell RNA‐seq bulk RNA‐seq genome‐wide association study hepatocellular carcinoma cuprotosis |
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To explore the associations between cuprotosis‐related genes (CRGs) across different stages of liver disease in metabolic dysfunction‐associated fatty... To explore the associations between cuprotosis-related genes (CRGs) across different stages of liver disease in metabolic dysfunction-associated fatty liver... AimsTo explore the associations between cuprotosis‐related genes (CRGs) across different stages of liver disease in metabolic dysfunction‐associated fatty... |
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SubjectTerms | Adult Aged bulk RNA‐seq Carcinoma, Hepatocellular - genetics Cell activation cuprotosis Disease Progression Fatty liver Fatty Liver - genetics Fatty Liver - metabolism Female Fibrosis Genome-wide association studies Genome-Wide Association Study Hepatocellular carcinoma Hepatocytes Humans Liver cancer Liver Cirrhosis - genetics Liver Cirrhosis - metabolism Liver diseases Liver Neoplasms - genetics Liver Neoplasms - metabolism Lymphocytes T Male metabolic dysfunction‐associated fatty liver disease Metabolism Middle Aged Monocytes Non-alcoholic Fatty Liver Disease - complications Non-alcoholic Fatty Liver Disease - genetics Non-alcoholic Fatty Liver Disease - metabolism Polymorphism, Single Nucleotide Single-nucleotide polymorphism sing‐cell RNA‐seq |
Title | Associations between cuprotosis‐related genes and the spectrum of metabolic dysfunction‐associated fatty liver disease: An exploratory study |
URI | https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fdom.15946 https://www.ncbi.nlm.nih.gov/pubmed/39285685 https://www.proquest.com/docview/3123660939 https://www.proquest.com/docview/3106196267 |
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