The IRE1α-XBP1 arm of the unfolded protein response is a host factor activated in SARS-CoV-2 infection
SARS-CoV-2 infection can cause severe pneumonia, wherein exacerbated inflammation plays a major role. This is reminiscent of the process commonly termed cytokine storm, a condition dependent on a disproportionated production of cytokines. This state involves the activation of the innate immune respo...
Saved in:
Published in | Biochimica et biophysica acta. Molecular basis of disease Vol. 1870; no. 5; p. 167193 |
---|---|
Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
Netherlands
Elsevier B.V
01.06.2024
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | SARS-CoV-2 infection can cause severe pneumonia, wherein exacerbated inflammation plays a major role. This is reminiscent of the process commonly termed cytokine storm, a condition dependent on a disproportionated production of cytokines. This state involves the activation of the innate immune response by viral patterns and coincides with the biosynthesis of the biomass required for viral replication, which may overwhelm the capacity of the endoplasmic reticulum and drive the unfolded protein response (UPR). The UPR is a signal transduction pathway composed of three branches that is initiated by a set of sensors: inositol-requiring protein 1 (IRE1), protein kinase RNA-like ER kinase (PERK), and activating transcription factor 6 (ATF6). These sensors control adaptive processes, including the transcriptional regulation of proinflammatory cytokines. Based on this background, the role of the UPR in SARS-CoV-2 replication and the ensuing inflammatory response was investigated using in vivo and in vitro models of infection. Mice and Syrian hamsters infected with SARS-CoV-2 showed a sole activation of the Ire1α-Xbp1 arm of the UPR associated with a robust production of proinflammatory cytokines. Human lung epithelial cells showed the dependence of viral replication on the expression of UPR-target proteins branching on the IRE1α-XBP1 arm and to a lower extent on the PERK route. Likewise, activation of the IRE1α-XBP1 branch by Spike (S) proteins from different variants of concern was a uniform finding. These results show that the IRE1α-XBP1 system enhances viral replication and cytokine expression and may represent a potential therapeutic target in SARS-CoV-2 severe pneumonia.
[Display omitted]
•SARS-CoV-2 infection of mice and Syrian hamsters activates the Ire1α-Xbp1 arm of UPR.•Ire1α-Xbp1 arm activity is associated with proinflammatory cytokine production.•SARS-CoV-2 leverages the Ire1α-Xbp1 arm for replication in lung epithelial cells.•The IRE1α-XBP1 arm is activated by Spike proteins from different variants of concern. |
---|---|
AbstractList | SARS-CoV-2 infection can cause severe pneumonia, wherein exacerbated inflammation plays a major role. This is reminiscent of the process commonly termed cytokine storm, a condition dependent on a disproportionated production of cytokines. This state involves the activation of the innate immune response by viral patterns and coincides with the biosynthesis of the biomass required for viral replication, which may overwhelm the capacity of the endoplasmic reticulum and drive the unfolded protein response (UPR). The UPR is a signal transduction pathway composed of three branches that is initiated by a set of sensors: inositol-requiring protein 1 (IRE1), protein kinase RNA-like ER kinase (PERK), and activating transcription factor 6 (ATF6). These sensors control adaptive processes, including the transcriptional regulation of proinflammatory cytokines. Based on this background, the role of the UPR in SARS-CoV-2 replication and the ensuing inflammatory response was investigated using in vivo and in vitro models of infection. Mice and Syrian hamsters infected with SARS-CoV-2 showed a sole activation of the Ire1α-Xbp1 arm of the UPR associated with a robust production of proinflammatory cytokines. Human lung epithelial cells showed the dependence of viral replication on the expression of UPR-target proteins branching on the IRE1α-XBP1 arm and to a lower extent on the PERK route. Likewise, activation of the IRE1α-XBP1 branch by Spike (S) proteins from different variants of concern was a uniform finding. These results show that the IRE1α-XBP1 system enhances viral replication and cytokine expression and may represent a potential therapeutic target in SARS-CoV-2 severe pneumonia.
[Display omitted]
•SARS-CoV-2 infection of mice and Syrian hamsters activates the Ire1α-Xbp1 arm of UPR.•Ire1α-Xbp1 arm activity is associated with proinflammatory cytokine production.•SARS-CoV-2 leverages the Ire1α-Xbp1 arm for replication in lung epithelial cells.•The IRE1α-XBP1 arm is activated by Spike proteins from different variants of concern. SARS-CoV-2 infection can cause severe pneumonia, wherein exacerbated inflammation plays a major role. This is reminiscent of the process commonly termed cytokine storm, a condition dependent on a disproportionated production of cytokines. This state involves the activation of the innate immune response by viral patterns and coincides with the biosynthesis of the biomass required for viral replication, which may overwhelm the capacity of the endoplasmic reticulum and drive the unfolded protein response (UPR). The UPR is a signal transduction pathway composed of three branches that is initiated by a set of sensors: inositol-requiring protein 1 (IRE1), protein kinase RNA-like ER kinase (PERK), and activating transcription factor 6 (ATF6). These sensors control adaptive processes, including the transcriptional regulation of proinflammatory cytokines. Based on this background, the role of the UPR in SARS-CoV-2 replication and the ensuing inflammatory response was investigated using in vivo and in vitro models of infection. Mice and Syrian hamsters infected with SARS-CoV-2 showed a sole activation of the Ire1α-Xbp1 arm of the UPR associated with a robust production of proinflammatory cytokines. Human lung epithelial cells showed the dependence of viral replication on the expression of UPR-target proteins branching on the IRE1α-XBP1 arm and to a lower extent on the PERK route. Likewise, activation of the IRE1α-XBP1 branch by Spike (S) proteins from different variants of concern was a uniform finding. These results show that the IRE1α-XBP1 system enhances viral replication and cytokine expression and may represent a potential therapeutic target in SARS-CoV-2 severe pneumonia.SARS-CoV-2 infection can cause severe pneumonia, wherein exacerbated inflammation plays a major role. This is reminiscent of the process commonly termed cytokine storm, a condition dependent on a disproportionated production of cytokines. This state involves the activation of the innate immune response by viral patterns and coincides with the biosynthesis of the biomass required for viral replication, which may overwhelm the capacity of the endoplasmic reticulum and drive the unfolded protein response (UPR). The UPR is a signal transduction pathway composed of three branches that is initiated by a set of sensors: inositol-requiring protein 1 (IRE1), protein kinase RNA-like ER kinase (PERK), and activating transcription factor 6 (ATF6). These sensors control adaptive processes, including the transcriptional regulation of proinflammatory cytokines. Based on this background, the role of the UPR in SARS-CoV-2 replication and the ensuing inflammatory response was investigated using in vivo and in vitro models of infection. Mice and Syrian hamsters infected with SARS-CoV-2 showed a sole activation of the Ire1α-Xbp1 arm of the UPR associated with a robust production of proinflammatory cytokines. Human lung epithelial cells showed the dependence of viral replication on the expression of UPR-target proteins branching on the IRE1α-XBP1 arm and to a lower extent on the PERK route. Likewise, activation of the IRE1α-XBP1 branch by Spike (S) proteins from different variants of concern was a uniform finding. These results show that the IRE1α-XBP1 system enhances viral replication and cytokine expression and may represent a potential therapeutic target in SARS-CoV-2 severe pneumonia. SARS-CoV-2 infection can cause severe pneumonia, wherein exacerbated inflammation plays a major role. This is reminiscent of the process commonly termed cytokine storm, a condition dependent on a disproportionated production of cytokines. This state involves the activation of the innate immune response by viral patterns and coincides with the biosynthesis of the biomass required for viral replication, which may overwhelm the capacity of the endoplasmic reticulum and drive the unfolded protein response (UPR). The UPR is a signal transduction pathway composed of three branches that is initiated by a set of sensors: inositol-requiring protein 1 (IRE1), protein kinase RNA-like ER kinase (PERK), and activating transcription factor 6 (ATF6). These sensors control adaptive processes, including the transcriptional regulation of proinflammatory cytokines. Based on this background, the role of the UPR in SARS-CoV-2 replication and the ensuing inflammatory response was investigated using in vivo and in vitro models of infection. Mice and Syrian hamsters infected with SARS-CoV-2 showed a sole activation of the Ire1α-Xbp1 arm of the UPR associated with a robust production of proinflammatory cytokines. Human lung epithelial cells showed the dependence of viral replication on the expression of UPR-target proteins branching on the IRE1α-XBP1 arm and to a lower extent on the PERK route. Likewise, activation of the IRE1α-XBP1 branch by Spike (S) proteins from different variants of concern was a uniform finding. These results show that the IRE1α-XBP1 system enhances viral replication and cytokine expression and may represent a potential therapeutic target in SARS-CoV-2 severe pneumonia. |
ArticleNumber | 167193 |
Author | García-Sastre, Adolfo White, Kris M. Uccellini, Melissa B. Alonso, Sara Clark, Jordan J. Fernández, Nieves Crespo, Mariano Sánchez Rathnasinghe, Raveen Cupic, Anastasija Sharma, Parul Alonso, Andrés Alvarez, Yolanda Pérez, Enrique Fernández, Jose Javier Yildiz, Soner Bayón, Yolanda Gupta, Ravindra K. Hiscox, Julian A. Rosales, Romel McGovern, Briana Lynn Albrecht, Randy A. Stewart, James P. Penrice-Randal, Rebekah Kehrer, Thomas Mlcochova, Petra Villalón-Letelier, Fernando Miorin, Lisa Marín, Arturo Schotsaert, Michael Irigoyen, Nerea Martínez, Fernando |
Author_xml | – sequence: 1 givenname: Jose Javier surname: Fernández fullname: Fernández, Jose Javier organization: Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003 Valladolid, Spain – sequence: 2 givenname: Arturo surname: Marín fullname: Marín, Arturo organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 3 givenname: Romel surname: Rosales fullname: Rosales, Romel organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 4 givenname: Rebekah surname: Penrice-Randal fullname: Penrice-Randal, Rebekah organization: Department of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK – sequence: 5 givenname: Petra surname: Mlcochova fullname: Mlcochova, Petra organization: Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Department of Medicine, University of Cambridge, Cambridge, UK – sequence: 6 givenname: Yolanda surname: Alvarez fullname: Alvarez, Yolanda organization: Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003 Valladolid, Spain – sequence: 7 givenname: Fernando surname: Villalón-Letelier fullname: Villalón-Letelier, Fernando organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 8 givenname: Soner surname: Yildiz fullname: Yildiz, Soner organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 9 givenname: Enrique surname: Pérez fullname: Pérez, Enrique organization: Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003 Valladolid, Spain – sequence: 10 givenname: Raveen surname: Rathnasinghe fullname: Rathnasinghe, Raveen organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 11 givenname: Anastasija surname: Cupic fullname: Cupic, Anastasija organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 12 givenname: Thomas surname: Kehrer fullname: Kehrer, Thomas organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 13 givenname: Melissa B. surname: Uccellini fullname: Uccellini, Melissa B. organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 14 givenname: Sara surname: Alonso fullname: Alonso, Sara organization: Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003 Valladolid, Spain – sequence: 15 givenname: Fernando surname: Martínez fullname: Martínez, Fernando organization: Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003 Valladolid, Spain – sequence: 16 givenname: Briana Lynn surname: McGovern fullname: McGovern, Briana Lynn organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 17 givenname: Jordan J. surname: Clark fullname: Clark, Jordan J. organization: Department of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK – sequence: 18 givenname: Parul surname: Sharma fullname: Sharma, Parul organization: Department of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK – sequence: 19 givenname: Yolanda surname: Bayón fullname: Bayón, Yolanda organization: Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003 Valladolid, Spain – sequence: 20 givenname: Andrés surname: Alonso fullname: Alonso, Andrés organization: Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003 Valladolid, Spain – sequence: 21 givenname: Randy A. surname: Albrecht fullname: Albrecht, Randy A. organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 22 givenname: Kris M. surname: White fullname: White, Kris M. organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 23 givenname: Michael surname: Schotsaert fullname: Schotsaert, Michael organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 24 givenname: Lisa surname: Miorin fullname: Miorin, Lisa organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 25 givenname: James P. surname: Stewart fullname: Stewart, James P. organization: Department of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK – sequence: 26 givenname: Julian A. surname: Hiscox fullname: Hiscox, Julian A. organization: Department of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK – sequence: 27 givenname: Ravindra K. surname: Gupta fullname: Gupta, Ravindra K. organization: Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Department of Medicine, University of Cambridge, Cambridge, UK – sequence: 28 givenname: Nerea surname: Irigoyen fullname: Irigoyen, Nerea organization: Division of Virology, Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge, UK – sequence: 29 givenname: Adolfo surname: García-Sastre fullname: García-Sastre, Adolfo email: adolfo.garcia-sastre@mssm.edu organization: Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA – sequence: 30 givenname: Mariano Sánchez surname: Crespo fullname: Crespo, Mariano Sánchez email: sanchezcrespomariano@gmail.com organization: Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003 Valladolid, Spain – sequence: 31 givenname: Nieves surname: Fernández fullname: Fernández, Nieves organization: Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003 Valladolid, Spain |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/38648902$$D View this record in MEDLINE/PubMed |
BookMark | eNp9kN1uFCEUgImpsdvqGxjDpTezcgaGgRuTuulf0qSmraZ3hIGDZbM7rDDbxMfyRXwmaaZ6WS4O4fCdc-A7IgdjGpGQ98CWwEB-Wi-HwfpYli1rxRJkD5q_IgtQvW5aye4PyILptmuE4PqQHJWyZnXJnr0hh1xJoTRrF-TH3QPSy5tT-PO7uf_yFajNW5oCnWp6P4a08ejpLqcJ40gzll0aC9JYqKUPqUw0WDelTGuMj3aqbMVuT25um1X63rT1FLBepfEteR3spuC75_2YfDs7vVtdNFfX55erk6vGcYCpUTAor0QnAFGpvu91p5F7qdsQBit9Cw6sGHzwHQzOMR44l-idRsH64CQ_Jh_nvvXNP_dYJrONxeFmY0dM-2I4Ex1Ap7ioqJhRl1MpGYPZ5bi1-ZcBZp4Um7WZFZsnxWZWXMs-PE_YD1v0_4v-Oa3A5xnA-s_HiNkUF3F06GOuMoxP8eUJfwEHZI_g |
Cites_doi | 10.1038/s41586-020-2286-9 10.1101/2020.10.13.334532 10.1126/sciadv.abi6110 10.1080/22221751.2020.1838955 10.3389/fphar.2020.582310 10.1038/ni.1857 10.3390/ijms232113623 10.1016/j.cell.2021.12.046 10.1073/pnas.2009799117 10.1016/j.jinf.2020.02.026 10.1038/s41590-021-00937-x 10.1038/cddis.2014.301 10.1371/journal.pbio.3001091 10.3389/fimmu.2018.03047 10.3389/fimmu.2017.00639 10.1093/bioinformatics/bts635 10.1001/jamanetworkopen.2022.6269 10.1016/j.celrep.2020.108234 10.1128/mbio.02415-22 10.1016/j.cell.2021.10.023 10.1038/nri.2016.62 10.1093/nar/gks461 10.1038/s41580-020-0250-z 10.1034/j.1600-065X.2003.00057.x 10.1172/jci.insight.150542 10.1128/JVI.01033-07 10.21873/invivo.11956 10.1371/journal.ppat.1009644 10.1073/pnas.2005615117 10.1016/j.celrep.2021.109793 10.1128/JVI.00659-06 10.1002/cpmc.108 10.1371/journal.pone.0106533 10.1038/s41579-020-00468-6 10.1038/s41598-021-02904-w 10.1016/j.cell.2022.05.014 10.1038/s41598-021-85049-0 10.1126/scitranslmed.aau5266 10.1016/j.celrep.2021.108891 10.1016/j.micinf.2020.04.009 10.1007/s00406-020-01231-x 10.1126/sciimmunol.add4906 10.1007/s40121-021-00500-z 10.1038/s41435-023-00243-6 10.1016/j.molcel.2021.05.023 10.1016/j.cell.2020.10.030 10.3390/v14050999 10.1126/science.abe9403 10.1016/j.isci.2021.102295 10.1093/ilar/ilab031 10.1038/s41422-020-0282-0 10.3389/fphar.2021.787261 10.1101/gr.275193.120 10.1016/j.molcel.2023.06.020 10.1186/s13059-014-0550-8 10.1001/jama.2020.22760 10.1172/JCI167359 10.1038/s41586-020-2423-5 10.1093/cid/ciaa644 10.1038/s41598-017-04968-z 10.1002/jmv.26776 10.1111/febs.14608 10.1038/s41467-022-34065-3 10.3389/fphar.2020.589810 10.1093/bioinformatics/btp616 10.3389/fphar.2022.874375 10.1038/s41467-022-30763-0 |
ContentType | Journal Article |
Copyright | 2024 Copyright © 2024. Published by Elsevier B.V. |
Copyright_xml | – notice: 2024 – notice: Copyright © 2024. Published by Elsevier B.V. |
DBID | CGR CUY CVF ECM EIF NPM AAYXX CITATION 7X8 |
DOI | 10.1016/j.bbadis.2024.167193 |
DatabaseName | Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed CrossRef MEDLINE - Academic |
DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) CrossRef MEDLINE - Academic |
DatabaseTitleList | MEDLINE - Academic MEDLINE |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Chemistry Biology |
EISSN | 1879-260X |
ExternalDocumentID | 10_1016_j_bbadis_2024_167193 38648902 S0925443924001820 |
Genre | Journal Article |
GrantInformation_xml | – fundername: NIH HHS grantid: S10 OD030463 – fundername: NIH HHS grantid: S10 OD026880 |
GroupedDBID | --- --K --M .~1 0R~ 0SF 1B1 1RT 1~. 1~5 23N 3O- 4.4 457 4G. 53G 5GY 5RE 5VS 6I. 7-5 71M 8P~ 9JM AACTN AAEDT AAEDW AAFTH AAIAV AAIKJ AAKOC AALRI AAOAW AAQFI AAQXK AAXUO ABBQC ABEFU ABFNM ABGSF ABLVK ABMAC ABMZM ABUDA ABVKL ABXDB ACDAQ ACIUM ACRLP ADBBV ADEZE ADMUD ADUVX AEBSH AEHWI AEKER AEXQZ AFKWA AFTJW AFXIZ AGHFR AGUBO AGYEJ AHHHB AIEXJ AIKHN AITUG AJOXV AJRQY ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ ANZVX ASPBG AVWKF AXJTR AZFZN BKOJK BLXMC BNPGV CS3 EBS EFJIC EJD EO8 EO9 EP2 EP3 FDB FEDTE FGOYB FIRID FNPLU FYGXN G-2 G-Q GBLVA HLW HVGLF HZ~ IHE IXB J1W KOM LX3 M41 MO0 N9A NCXOZ O-L O9- OAUVE OK1 OZT P-8 P-9 PC. Q38 R2- ROL RPZ SBG SDF SDG SDP SES SEW SPCBC SSH SSU SSZ T5K UQL WUQ XJT XPP ~G- AAXKI ADVLN AFJKZ CGR CUY CVF ECM EIF NPM AAYXX ACRPL ADNMO CITATION 7X8 |
ID | FETCH-LOGICAL-c311t-81b8d84541ee88777959e3d692ffba6d21c1a4bdfd51bcc03f336edc9e407fc63 |
IEDL.DBID | AIKHN |
ISSN | 0925-4439 1879-260X |
IngestDate | Sat Oct 26 04:00:50 EDT 2024 Fri Dec 06 07:09:44 EST 2024 Sat Nov 02 12:29:52 EDT 2024 Sat May 25 15:41:35 EDT 2024 |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 5 |
Keywords | COVID-19 Viral sepsis Pneumonia Transcription factors Cytokines Variants of concern TLR Fluvoxamine Unfolded protein response |
Language | English |
License | Copyright © 2024. Published by Elsevier B.V. |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c311t-81b8d84541ee88777959e3d692ffba6d21c1a4bdfd51bcc03f336edc9e407fc63 |
Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
PMID | 38648902 |
PQID | 3045115834 |
PQPubID | 23479 |
ParticipantIDs | proquest_miscellaneous_3045115834 crossref_primary_10_1016_j_bbadis_2024_167193 pubmed_primary_38648902 elsevier_sciencedirect_doi_10_1016_j_bbadis_2024_167193 |
PublicationCentury | 2000 |
PublicationDate | June 2024 2024-Jun 2024-06-00 20240601 |
PublicationDateYYYYMMDD | 2024-06-01 |
PublicationDate_xml | – month: 06 year: 2024 text: June 2024 |
PublicationDecade | 2020 |
PublicationPlace | Netherlands |
PublicationPlace_xml | – name: Netherlands |
PublicationTitle | Biochimica et biophysica acta. Molecular basis of disease |
PublicationTitleAlternate | Biochim Biophys Acta Mol Basis Dis |
PublicationYear | 2024 |
Publisher | Elsevier B.V |
Publisher_xml | – name: Elsevier B.V |
References | Ibrahim, Abdelmalek, Elshahat, Elfiky (bb0155) 2020; 80 Song, Gao, Dozmorov, Malladi, Saha, McDaniel, Parameswaran, Liang, Arana, Zhang (bb0275) 2021; 34 Ghareghani, Zibara, Sadeghi, Dokoohaki, Sadeghi, Aryanpour, Ghanbari (bb0205) 2017; 7 Daniloski, Jordan, Wessels, Hoagland, Kasela, Legut, Maniatis, Mimitou, Lu, Geller, Danziger, Rosenberg, Phatnani, Smibert, Lappalainen, Tenoever, Sanjana (bb0075) 2021; 184 Wang, Cao, Zhang, Yang, Liu, Xu, Shi, Hu, Zhong, Xiao (bb0215) 2020; 30 Imai, Iwatsuki-Horimoto, Hatta, Loeber, Halfmann, Nakajima, Watanabe, Ujie, Takahashi, Ito, Yamada, Fan, Chiba, Kuroda, Guan, Takada, Armbrust, Balogh, Furusawa, Okuda, Ueki, Yasuhara, Sakai-Tagawa, Lopes, Kiso, Yamayoshi, Kinoshita, Ohmagari, Hattori, Takeda, Mitsuya, Krammer, Suzuki, Kawaoka (bb0180) 2020; 117 Dobin, Davis, Schlesinger, Drenkow, Zaleski, Jha, Batut, Chaisson, Gingeras (bb0110) 2013; 29 Köseler, Sabirli, Gören, Türkçüer, Kurt (bb0250) 2020; 34 Rathnasinghe, Jangra, Ye, Cupic, Singh, Martínez-Romero, Mulder, Kehrer, Yildiz, Choi, Yeung, Mena, Gillespie, De Vrieze, Aslam, Stadlbauer, Meekins, McDowell, Balaraman, Corley, Richt, De Geest, Miorin, PVI study group, Krammer, Martinez-Sobrido, Simon, García-Sastre, Schotsaert (bb0100) 2022; 13 Xia, Cao, Xie, Zhang, Chen, Wang, Menachery, Rajsbaum, Shi (bb0190) 2020; 33 Rosen, Seki, Fernández-Castañeda, Beiter, Eccles, Woodfolk, Gaultier (bb0325) 2019; 11 Kamel, Noerenberg, Cerikan, Chen, Järvelin, Kammoun, Lee, Shuai, Garcia-Moreno, Andrejeva, Deery, Johnson, Neufeldt, Cortese, Knight, Lilley, Martinez, Davis, Bartenschlager, Mohammed, Castello (bb0345) 2021; 81 Chan, Zhang, Yuan, Poon, Chan, Lee, Chan, Fan, Tsoi, Wen, Liang, Cao, Chen, Tang, Luo, Cai, Kok, Chu, Chan, Sridhar, Chen, Chen, K.K. To, Yuen (bb0175) 2020; 71 Chan, Siu, Chin, Yuen, Zheng, Jin (bb0225) 2006; 80 Awasthi, Chopra, Cho, Emmanuelli, Sandoval, Hwang, Chae, Salvagno, Tan, Vasquez-Urbina, Fernandez Rodriguez, Santagostino, Iwawaki, Romero-Sandoval, Sanchez Crespo, Morales, Iliev, Hohl, Cubillos-Ruiz (bb0355) 2023; 133 Martinon, Chen, Lee, Glimcher (bb0025) 2010; 11 Nguyen, Renner, Silva, Yang, Parenti, Medina, Nicolaescu, Gula, Drayman, Valdespino, Mohamed, Dann, Wannemo, Robinson-Mailman, Gonzalez, Stock, Cao, Qiao, Moellering, Tay, Randall, Beers, Rosner, Oakes, Weiss (bb0220) 2022; 13 Omi, Tanimukai, Kanayama, Sakagami, Tagami, Okochi, Morihara, Sato, Yanagida, Kitasyoji, Hara, Imaizumi, Maurice, Chevallier, Marchal, Takeda, Kudo (bb0335) 2014; 5 Prasad, Cerikan, Stahl, Kopp, Magg, Acosta-Rivero, Kim, Klein, Funaya, Haselmann, Cortese, Heigwer, Bageritz, Bitto, Jargalsaikhan, Neufeldt, Pahmeier, Boutros, Yamauchi, Ruggieri, Bartenschlager (bb0135) 2023; 83 Laurent, Yang, Rendeiro, Nilsson-Payant, Carrau, Chandar, Bram, tenOever, Elemento, Ivashkiv (bb0280) 2022; 7 Robinson, McCarthy, Smyth (bb0120) 2010; 26 Rathnasinghe, Strohmeier, Amanat, Gillespie, Krammer, García-Sastre, Coughlan, Schotsaert, Uccellini (bb0150) 2020; 9 Abate, Niso, Abatematteo, Contino, Colabufo, Berardi (bb0065) 2020; 11 Reuschl, Thorne, Zuliani-Alvarez, Bouhaddou, Obernier, Hiatt, Soucheray, Turner, Fabius, Nguyen (bb0085) 2021 Oda, den Hartigh, Jackson, Tronco, Fink (bb0245) 2023; 14 Nguyen, Yang, Nicolaescu, Best, Gula, Saxena, Gabbard, Chen, Ohtsuki, Friesen (bb0350) 2022 . Wang, Zhou, Keppel, Solano, Baudys, Goldstein, Finn, Fan, Chapman, Bundy, Woolfitt, Osman, Pirkle, Wentworth, Barr (bb0240) 2021; 11 Shin, Ha, Machida, Lee (bb0160) 2022; 13 Wu, Smyth (bb0125) 2012; 40 Echavarría-Consuegra, Cook, Busnadiego, Lefèvre, Keep, Brown, Doyle, Dowgier, Franaszek, Moore, Siddell, Bickerton, Hale, Firth, Brierley, Irigoyen (bb0235) 2021; 17 Xu, Han, Li, Sun, Wang, Fu, Zhou, Zheng, Yang, Li, Zhang, Pan, Wei (bb0035) 2020; 117 Rihn, Merits, Bakshi, Turnbull, Wickenhagen, Alexander, Baillie, Brennan, Brown, Brunker (bb0080) 2021; 19 Gordon, Jang, Bouhaddou, Xu, Obernier, White, O’Meara, Rezelj, Guo (bb0050) 2020; 583 Love, Huber, Anders (bb0115) 2014; 15 Choudhury, Das, Patra, Mukherjee (bb0260) 2021; 93 Lee, Vigod, Bortolussi-Courval, Hanula, Boulware, Lenze, Reiersen, McDonald (bb0045) 2022; 5 Rosa-Fernandes, Lazari, da Silva, de Morais Gomes, Machado, dos Santos, Araujo, Coutinho, Arini, Angeli (bb0340) 2021 Dejnirattisai, Huo, Zhou, Zahradník, Supasa, Liu, Duyvesteyn, Ginn, Mentzer, Tuekprakhon (bb0090) 2022; 185 Glebov (bb0310) 2021; 12 Chen, Hao, Zhu, Yang, Shi, Zheng, Wang, Chen (bb0030) 2021; 10 Szabo, Kovacs, Frecska, Rajnavolgyi (bb0200) 2014; 9 Salvi, Nguyen, Sozio, Schioppa, Gaudenzi, Laffranchi, Scapini, Passari, Barbazza, Tiberio (bb0290) 2021; 6 Campbell, To, Hanna, Spector (bb0295) 2021; 24 Lmanza, Carlesso, Chintha, Creedican, Doultsinos, Leuzzi, Luís, McCarthy, Montibeller, More (bb0010) 2019; 286 Zhang, Park, Bennett, Thornton, Kim (bb0130) 2021; 31 Lenze, Mattar, Zorumski, Stevens, Schweiger, Nicol, Miller, Yang, Yingling, Avidan, Reiersen (bb0195) 2020; 324 Fernandez, Mancebo, Garcinuño, March, Alvarez, Alonso, Inglada, Blanco, Orduna, Montero, Sandoval, Cubillos-Ruiz, Bustamante, Fernandez, Sanchez Crespo (bb0285) 2023 Hetz, Zhang, Kaufman (bb0170) 2021; 21 Márquez, Fernández, Terán-Cabanillas, Herrero, Alonso, Azogil, Montero, Iwawaki, Cubillos-Ruiz, Fernández, Sánchez Crespo (bb0305) 2017; 8 Gordon, Hiatt, Bouhaddou, Rezelj, Ulferts, Braberg, Jureka, Obernier, Guo (bb0055) 2020; 370 Kuiper, Wilson, Mangalaganesh, Lee, Reti, Vasan (bb0145) 2021; 262 Hashimoto (bb0070) 2021; 271 J.J. Clark, R. Penrice-Randal, P. Sharma, A. Kipar, X. Dong, S.H. Pennington, A.E. Marriott, S. Colombo, A. Davidson, M.K. Williamson, Sequential infection with influenza a virus followed by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) leads to more severe disease and encephalitis in a mouse model of COVID-19, BioRxiv, doi Péricat, Leon-Icaza, Sanchez Rico, Mühle, Zoicas, Schumacher, Planès, Mazars, Gros, Carpinteiro, Becker, Izopet, Strub-Wourgaft, Sjö, Neyrolles, Kleuser, Limosin, Gulbins, Kornhuber, Meunier, Hoertel, Cougoule (bb0330) 2022; 23 Mogensen (bb0185) 2019; 9 Iwakoshi, Lee, Glimcher (bb0020) 2003; 194 Zheng, Karki, Williams, Yang, Fitzpatrick, Vogel, Jonsson, Kanneganti (bb0265) 2021; 22 Takenaka, Tanaka, Kitabatake, Kuramochi, Aoki, Tsukimoto (bb0320) 2022; 13 Planès, Bert, Tairi, BenMohamed, Bahraoui (bb0270) 2022; 14 Williamson, Feldmann, Schwarz, Meade-White, Porter, Schulz, van Doremalen, Leighton, Yinda, Pérez-Pérez, Okumura, Lovaglio, Hanley, Saturday, Bosio, Anzick, Barbian, Cihlar, Martens, Scott, Munster, de Wit (bb0210) 2020; 585 Nutalai, Zhou, Tuekprakhon, Ginn, Supasa, Liu, Huo, Mentzer, Duyvesteyn, Dijokaite-Guraliuc (bb0095) 2022; 185 Zimniak, Kirschner, Hilpert, Geiger, Danov, Oberwinkler, Steinke, Sewald, Seibel, Bodem (bb0315) 2021; 11 Reis, Dos Santos Moreira-Silva, Silva, Thabane, Milagres, Ferreira, Dos Santos, de Souza Campos, Nogueira, de Almeida, Callegari, de Figueiredo Neto, Savassi, Simplicio, Ribeiro, Oliveira, Harari, Forrest, Ruton, Sprague, McKay, Glushchenko, Rayner, Lenze, Reiersen, Guyatt, Mills (bb0040) 2022; 10 Versteeg, Van De Nes, Bredenbeek, Spaan (bb0230) 2007; 81 Ren, Wen, Fan, Hou, Su, Cai, Li, Liu, Tang, Zhang (bb0255) 2021; 184 Amanat, White, Miorin, Strohmeier, McMahon, Meade, Liu, Albrecht, Simon, Martinez-Sobrido (bb0140) 2020; 58 Grootjans, Kaser, Kaufman, Blumbergn (bb0015) 2016; 16 Moreno-Eutimio, López-Macías, Pastelin-Palacios (bb0300) 2020; 22 V’kovski, Kratzel, Steiner, Stalder, Thiel (bb0005) 2021; 19 Vela (bb0060) 2020; 11 N. Liu, C. Jiang, P. Cai, Z. Shen, W. Sun, H. Xu, M. Fang, X. Yao, L. Zhu, X. Gao, Single-cell analysis of COVID-19, sepsis, and HIV infection reveals hyperinflammatory and immunosuppressive signatures in monocytes, Cell Rep, 37:109793. doi Campbell (10.1016/j.bbadis.2024.167193_bb0295) 2021; 24 Zheng (10.1016/j.bbadis.2024.167193_bb0265) 2021; 22 Nutalai (10.1016/j.bbadis.2024.167193_bb0095) 2022; 185 Takenaka (10.1016/j.bbadis.2024.167193_bb0320) 2022; 13 Szabo (10.1016/j.bbadis.2024.167193_bb0200) 2014; 9 Love (10.1016/j.bbadis.2024.167193_bb0115) 2014; 15 Wu (10.1016/j.bbadis.2024.167193_bb0125) 2012; 40 Robinson (10.1016/j.bbadis.2024.167193_bb0120) 2010; 26 Reis (10.1016/j.bbadis.2024.167193_bb0040) 2022; 10 Rathnasinghe (10.1016/j.bbadis.2024.167193_bb0150) 2020; 9 Williamson (10.1016/j.bbadis.2024.167193_bb0210) 2020; 585 Lmanza (10.1016/j.bbadis.2024.167193_bb0010) 2019; 286 Daniloski (10.1016/j.bbadis.2024.167193_bb0075) 2021; 184 Versteeg (10.1016/j.bbadis.2024.167193_bb0230) 2007; 81 Xia (10.1016/j.bbadis.2024.167193_bb0190) 2020; 33 Shin (10.1016/j.bbadis.2024.167193_bb0160) 2022; 13 Wang (10.1016/j.bbadis.2024.167193_bb0215) 2020; 30 Nguyen (10.1016/j.bbadis.2024.167193_bb0350) 2022 Dobin (10.1016/j.bbadis.2024.167193_bb0110) 2013; 29 Hashimoto (10.1016/j.bbadis.2024.167193_bb0070) 2021; 271 Kamel (10.1016/j.bbadis.2024.167193_bb0345) 2021; 81 Kuiper (10.1016/j.bbadis.2024.167193_bb0145) 2021; 262 Chan (10.1016/j.bbadis.2024.167193_bb0175) 2020; 71 Omi (10.1016/j.bbadis.2024.167193_bb0335) 2014; 5 Vela (10.1016/j.bbadis.2024.167193_bb0060) 2020; 11 Mogensen (10.1016/j.bbadis.2024.167193_bb0185) 2019; 9 Laurent (10.1016/j.bbadis.2024.167193_bb0280) 2022; 7 Lee (10.1016/j.bbadis.2024.167193_bb0045) 2022; 5 Ghareghani (10.1016/j.bbadis.2024.167193_bb0205) 2017; 7 Rosa-Fernandes (10.1016/j.bbadis.2024.167193_bb0340) 2021 Zhang (10.1016/j.bbadis.2024.167193_bb0130) 2021; 31 Martinon (10.1016/j.bbadis.2024.167193_bb0025) 2010; 11 Glebov (10.1016/j.bbadis.2024.167193_bb0310) 2021; 12 V’kovski (10.1016/j.bbadis.2024.167193_bb0005) 2021; 19 10.1016/j.bbadis.2024.167193_bb0165 Dejnirattisai (10.1016/j.bbadis.2024.167193_bb0090) 2022; 185 Amanat (10.1016/j.bbadis.2024.167193_bb0140) 2020; 58 Awasthi (10.1016/j.bbadis.2024.167193_bb0355) 2023; 133 Gordon (10.1016/j.bbadis.2024.167193_bb0050) 2020; 583 Hetz (10.1016/j.bbadis.2024.167193_bb0170) 2021; 21 Chan (10.1016/j.bbadis.2024.167193_bb0225) 2006; 80 Grootjans (10.1016/j.bbadis.2024.167193_bb0015) 2016; 16 Song (10.1016/j.bbadis.2024.167193_bb0275) 2021; 34 Iwakoshi (10.1016/j.bbadis.2024.167193_bb0020) 2003; 194 Chen (10.1016/j.bbadis.2024.167193_bb0030) 2021; 10 Moreno-Eutimio (10.1016/j.bbadis.2024.167193_bb0300) 2020; 22 Köseler (10.1016/j.bbadis.2024.167193_bb0250) 2020; 34 Rihn (10.1016/j.bbadis.2024.167193_bb0080) 2021; 19 Ren (10.1016/j.bbadis.2024.167193_bb0255) 2021; 184 Salvi (10.1016/j.bbadis.2024.167193_bb0290) 2021; 6 Fernandez (10.1016/j.bbadis.2024.167193_bb0285) 2023 Reuschl (10.1016/j.bbadis.2024.167193_bb0085) 2021 Lenze (10.1016/j.bbadis.2024.167193_bb0195) 2020; 324 Choudhury (10.1016/j.bbadis.2024.167193_bb0260) 2021; 93 Zimniak (10.1016/j.bbadis.2024.167193_bb0315) 2021; 11 Nguyen (10.1016/j.bbadis.2024.167193_bb0220) 2022; 13 Xu (10.1016/j.bbadis.2024.167193_bb0035) 2020; 117 Prasad (10.1016/j.bbadis.2024.167193_bb0135) 2023; 83 Rosen (10.1016/j.bbadis.2024.167193_bb0325) 2019; 11 Abate (10.1016/j.bbadis.2024.167193_bb0065) 2020; 11 Ibrahim (10.1016/j.bbadis.2024.167193_bb0155) 2020; 80 Oda (10.1016/j.bbadis.2024.167193_bb0245) 2023; 14 Márquez (10.1016/j.bbadis.2024.167193_bb0305) 2017; 8 Péricat (10.1016/j.bbadis.2024.167193_bb0330) 2022; 23 Wang (10.1016/j.bbadis.2024.167193_bb0240) 2021; 11 Gordon (10.1016/j.bbadis.2024.167193_bb0055) 2020; 370 10.1016/j.bbadis.2024.167193_bb0105 Rathnasinghe (10.1016/j.bbadis.2024.167193_bb0100) 2022; 13 Planès (10.1016/j.bbadis.2024.167193_bb0270) 2022; 14 Imai (10.1016/j.bbadis.2024.167193_bb0180) 2020; 117 Echavarría-Consuegra (10.1016/j.bbadis.2024.167193_bb0235) 2021; 17 |
References_xml | – volume: 14 year: 2023 ident: bb0245 article-title: The unfolded protein response components IRE1α and XBP1 promote human coronavirus infection publication-title: mBio contributor: fullname: Fink – volume: 583 start-page: 459 year: 2020 end-page: 468 ident: bb0050 article-title: A SARS-CoV-2 protein interaction map reveals targets for drug repurposing publication-title: Nature contributor: fullname: Guo – volume: 22 start-page: 829 year: 2021 end-page: 838 ident: bb0265 article-title: TLR2 senses the SARS-CoV-2 envelope protein to produce inflammatory cytokines publication-title: Nat. Immunol. contributor: fullname: Kanneganti – volume: 13 start-page: 3921 year: 2022 ident: bb0100 article-title: Characterization of SARS-CoV-2 spike mutations important for infection of mice and escape from human immune sera publication-title: Nat. Commun. contributor: fullname: Schotsaert – volume: 81 start-page: 2851 year: 2021 end-page: 2867.e7 ident: bb0345 article-title: Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection publication-title: Mol. Cell contributor: fullname: Castello – volume: 585 start-page: 273 year: 2020 end-page: 276 ident: bb0210 article-title: Clinical benefit of remdesivir in rhesus macaques infected with SARS-CoV-2 publication-title: Nature contributor: fullname: de Wit – volume: 5 year: 2022 ident: bb0045 article-title: Fluvoxamine for outpatient management of COVID-19 to prevent hospitalization: a systematic review and meta-analysis publication-title: JAMA Netw. Open contributor: fullname: McDonald – volume: 9 start-page: 2433 year: 2020 end-page: 2445 ident: bb0150 article-title: Comparison of transgenic and adenovirus hACE2 mouse models for SARS-CoV-2 infection publication-title: Emerg. Microbes Infect. contributor: fullname: Uccellini – volume: 17 year: 2021 ident: bb0235 article-title: Manipulation of the unfolded protein response: a pharmacological strategy against coronavirus infection publication-title: PLoS Pathog. contributor: fullname: Irigoyen – volume: 80 start-page: 554 year: 2020 end-page: 562 ident: bb0155 article-title: COVID-19 spike-host cell receptor GRP78 binding site prediction publication-title: J. Infect. contributor: fullname: Elfiky – volume: 5 year: 2014 ident: bb0335 article-title: Fluvoxamine alleviates ER stress via induction of Sigma-1 receptor publication-title: Cell Death Dis. contributor: fullname: Kudo – volume: 117 start-page: 16587 year: 2020 end-page: 16595 ident: bb0180 article-title: Syrian hamsters as a small animal model for SARS-CoV-2 infection and countermeasure development publication-title: Proc. Natl. Acad. Sci. U. S. A. contributor: fullname: Kawaoka – volume: 33 year: 2020 ident: bb0190 article-title: Evasion of type I interferon by SARS-CoV-2 publication-title: Cell Rep. contributor: fullname: Shi – volume: 271 start-page: 249 year: 2021 end-page: 258 ident: bb0070 article-title: Repurposing of CNS drugs to treat COVID-19 infection: targeting the sigma-1 receptor publication-title: Eur Arch Psychiatry Clin.Neurosci contributor: fullname: Hashimoto – volume: 40 start-page: e133 year: 2012 ident: bb0125 article-title: Camera: a competitive gene set test accounting for inter-gene correlation publication-title: Nucleic Acids Res. contributor: fullname: Smyth – volume: 21 start-page: 421 year: 2021 end-page: 438 ident: bb0170 article-title: Mechanisms, regulation and functions of the unfolded protein response publication-title: Nat. Rev. Mol. Cell Biol. contributor: fullname: Kaufman – volume: 262 start-page: 48 year: 2021 end-page: 59 ident: bb0145 article-title: But mouse, you are not lone”: on some severe acute respiratory syndrome coronavirus 2 variants infecting mice publication-title: ILAR J contributor: fullname: Vasan – volume: 22 start-page: 226 year: 2020 end-page: 229 ident: bb0300 article-title: Bioinformatic analysis and identification of single-stranded RNA sequences recognized by TLR7/8 in the SARS-CoV-2, SARS-CoV, and MERS-CoV genomes publication-title: Microbes Infect. contributor: fullname: Pastelin-Palacios – volume: 370 year: 2020 ident: bb0055 article-title: Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms publication-title: Science contributor: fullname: Guo – volume: 71 start-page: 2428 year: 2020 end-page: 2446 ident: bb0175 article-title: Simulation of the clinical and pathological manifestations of coronavirus disease 2019 (COVID-19) in a golden Syrian hamster model: implications for disease pathogenesis and transmissibility publication-title: Clin. Infect. Dis. contributor: fullname: Yuen – volume: 184 year: 2021 ident: bb0255 article-title: COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas publication-title: Cell contributor: fullname: Zhang – volume: 34 year: 2021 ident: bb0275 article-title: IRF1 governs the differential interferon-stimulated gene responses in human monocytes and macrophages by regulating chromatin accessibility publication-title: Cell Rep. contributor: fullname: Zhang – volume: 31 start-page: 1290 year: 2021 end-page: 1295 ident: bb0130 article-title: Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N publication-title: Genome Res. contributor: fullname: Kim – volume: 11 year: 2020 ident: bb0060 article-title: Repurposing sigma-1 receptor ligands for COVID-19 therapy? publication-title: Front. Pharmacol. contributor: fullname: Vela – volume: 24 year: 2021 ident: bb0295 article-title: SARS-CoV-2, SARS-CoV-1, and HIV-1 derived ssRNA sequences activate the NLRP3 inflammasome in human macrophages through a non-classical pathway publication-title: iScience contributor: fullname: Spector – year: 2021 ident: bb0085 article-title: Host-directed therapies against early-lineage SARS-CoV-2 retain efficacy against B. 1.1. 7 variant publication-title: BioRxiv contributor: fullname: Nguyen – volume: 11 start-page: 23561 year: 2021 ident: bb0240 article-title: N-glycosylation profiles of the SARS-CoV-2 spike D614G mutant and its ancestral protein characterized by advanced mass spectrometry publication-title: Sci. Rep. contributor: fullname: Barr – volume: 9 start-page: 3047 year: 2019 ident: bb0185 article-title: IRF and STAT transcription factors-from basic biology to roles in infection, protective immunity, and primary immunodeficiencies publication-title: Front. Immunol. contributor: fullname: Mogensen – year: 2021 ident: bb0340 article-title: SARS-CoV-2 activates ER stress and unfolded protein response publication-title: BioRxiv contributor: fullname: Angeli – volume: 83 start-page: 2559 year: 2023 end-page: 2577.e8 ident: bb0135 article-title: Enhanced SARS-CoV-2 entry via UPR-dependent AMPK-related kinase NUAK2 publication-title: Mol. Cell contributor: fullname: Bartenschlager – volume: 7 start-page: 1 year: 2017 end-page: 17 ident: bb0205 article-title: Fluvoxamine stimulates oligodendrogenesis of cultured neural stem cells and attenuates inflammation and demyelination in an animal model of multiple sclerosis publication-title: Sci. Rep. contributor: fullname: Ghanbari – volume: 13 start-page: e0241522 year: 2022 ident: bb0220 article-title: SARS-CoV-2 diverges from other betacoronaviruses in only partially activating the IRE1α/XBP1 endoplasmic reticulum stress pathway in human lung-derived cells publication-title: mBio contributor: fullname: Weiss – volume: 6 year: 2021 ident: bb0290 article-title: SARS-CoV-2–associated ssRNAs activate inflammation and immunity via TLR7/8 publication-title: JCI Insight contributor: fullname: Tiberio – volume: 12 year: 2021 ident: bb0310 article-title: Low-dose fluvoxamine modulates endocytic trafficking of SARS-CoV-2 spike protein: a potential mechanism for anti-COVID-19 protection by antidepressants publication-title: Front. Pharmacol. contributor: fullname: Glebov – year: 2023 ident: bb0285 article-title: IRE1α-XBP1 activation elicited by viral singled stranded RNA via TLR8 may modulate lung cytokine induction in SARS-CoV-2 pneumonia publication-title: Genes Immun. contributor: fullname: Sanchez Crespo – volume: 286 start-page: 241 year: 2019 end-page: 278 ident: bb0010 article-title: Endoplasmic reticulum stress signalling–from basic mechanisms to clinical applications publication-title: FEBS J. contributor: fullname: More – volume: 14 start-page: 999 year: 2022 ident: bb0270 article-title: SARS-CoV-2 envelope (E) protein binds and activates TLR2 pathway: a novel molecular target for COVID-19 interventions publication-title: Viruses contributor: fullname: Bahraoui – volume: 324 start-page: 2292 year: 2020 end-page: 2300 ident: bb0195 article-title: Fluvoxamine vs placebo and clinical deterioration in outpatients with symptomatic COVID-19: a randomized clinical trial publication-title: JAMA contributor: fullname: Reiersen – volume: 117 start-page: 10970 year: 2020 end-page: 10975 ident: bb0035 article-title: Effective treatment of severe COVID-19 patients with tocilizumab publication-title: Proc. Natl. Acad. Sci. U. S. A. contributor: fullname: Wei – volume: 133 year: 2023 ident: bb0355 article-title: Inflammatory ER stress responses dictate the immunopathogenic progression of systemic candidiasis publication-title: J. Clin. Invest. contributor: fullname: Cubillos-Ruiz – volume: 8 start-page: 639 year: 2017 ident: bb0305 article-title: Endoplasmic reticulum stress sensor IRE1α enhances IL-23 expression by human dendritic cells publication-title: Front. Immunol. contributor: fullname: Sánchez Crespo – volume: 185 start-page: 2116 year: 2022 end-page: 2131 ident: bb0095 article-title: Potent cross-reactive antibodies following omicron breakthrough in vaccinees publication-title: Cell contributor: fullname: Dijokaite-Guraliuc – volume: 15 start-page: 550 year: 2014 ident: bb0115 article-title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 publication-title: Genome Biol. contributor: fullname: Anders – volume: 11 year: 2020 ident: bb0065 article-title: PB28, the sigma-1 and sigma-2 receptors modulator with potent anti–SARS-CoV-2 activity: a review about its pharmacological properties and structure affinity relationships publication-title: Front. Pharmacol. contributor: fullname: Berardi – volume: 29 start-page: 15 year: 2013 end-page: 21 ident: bb0110 article-title: STAR: ultrafast universal RNA-seq aligner publication-title: Bioinformatics contributor: fullname: Gingeras – volume: 13 year: 2022 ident: bb0320 article-title: Profiling differential effects of five selective serotonin reuptake inhibitors on TLRs-dependent and-independent IL-6 production in immune cells identifies fluoxetine as preferred anti-inflammatory drug candidate publication-title: Front. Pharmacol. contributor: fullname: Tsukimoto – year: 2022 ident: bb0350 article-title: Cannabidiol inhibits SARS-CoV-2 replication through induction of the host ER stress and innate immune responses publication-title: Sci. Adv. contributor: fullname: Friesen – volume: 19 year: 2021 ident: bb0080 article-title: A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research publication-title: PLoS Biol. contributor: fullname: Brunker – volume: 184 start-page: 92 year: 2021 end-page: 105.e16 ident: bb0075 article-title: Identification of required host factors for SARS-CoV-2 infection in human cells publication-title: Cell contributor: fullname: Sanjana – volume: 34 start-page: 1645 year: 2020 end-page: 1650 ident: bb0250 article-title: Endoplasmic reticulum stress markers in SARS-COV-2 infection and pneumonia: case-control study publication-title: In Vivo contributor: fullname: Kurt – volume: 93 start-page: 2476 year: 2021 end-page: 2486 ident: bb0260 article-title: In silico analyses on the comparative sensing of SARS-CoV-2 mRNA by the intracellular TLRs of humans publication-title: J. Med. Virol. contributor: fullname: Mukherjee – volume: 10 start-page: e42 year: 2022 end-page: e51 ident: bb0040 article-title: TOGETHER investigators, effect of early treatment with fluvoxamine on risk of emergency care and hospitalisation among patients with COVID-19: the TOGETHER randomised, platform clinical trial, lancet glob publication-title: Health contributor: fullname: Mills – volume: 185 start-page: 467 year: 2022 end-page: 484 ident: bb0090 article-title: SARS-CoV-2 omicron-B. 1.1. 529 leads to widespread escape from neutralizing antibody responses publication-title: Cell contributor: fullname: Tuekprakhon – volume: 19 start-page: 155 year: 2021 end-page: 170 ident: bb0005 article-title: Coronavirus biology and replication: implications for SARS-CoV-2 publication-title: Nat. Rev. Microbiol. contributor: fullname: Thiel – volume: 30 start-page: 269 year: 2020 end-page: 271 ident: bb0215 article-title: Remdesivir and chloroquine effectively inhibit the recently emerged novel coronavirus (2019-nCoV) in vitro publication-title: Cell Res. contributor: fullname: Xiao – volume: 13 start-page: 1 year: 2022 end-page: 6 ident: bb0160 article-title: The stress-inducible ER chaperone GRP78/BiP is upregulated during SARS-CoV-2 infection and acts as a pro-viral protein publication-title: Nat. Commun. contributor: fullname: Lee – volume: 26 start-page: 139 year: 2010 end-page: 140 ident: bb0120 article-title: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data publication-title: Bioinformatics contributor: fullname: Smyth – volume: 11 start-page: 5890 year: 2021 ident: bb0315 article-title: The serotonin reuptake inhibitor fluoxetine inhibits SARS-CoV-2 in human lung tissue publication-title: Sci. Rep. contributor: fullname: Bodem – volume: 9 year: 2014 ident: bb0200 article-title: Psychedelic N, N-dimethyltryptamine and 5-methoxy-N, N-dimethyltryptamine modulate innate and adaptive inflammatory responses through the sigma-1 receptor of human monocyte-derived dendritic cells publication-title: PloS One contributor: fullname: Rajnavolgyi – volume: 10 start-page: 1907 year: 2021 end-page: 1931 ident: bb0030 article-title: Potential adverse effects of dexamethasone therapy on COVID-19 patients: review and recommendations publication-title: Infect. Dis. Ther. contributor: fullname: Chen – volume: 7 year: 2022 ident: bb0280 article-title: Sensing of SARS-CoV-2 by pDCs and their subsequent production of IFN-I contribute to macrophage-induced cytokine storm during COVID-19 publication-title: Sci Immunol contributor: fullname: Ivashkiv – volume: 58 year: 2020 ident: bb0140 article-title: An in vitro microneutralization assay for SARS-CoV-2 serology and drug screening publication-title: Curr. Protoc. Microbiol. contributor: fullname: Martinez-Sobrido – volume: 11 year: 2019 ident: bb0325 article-title: Modulation of the sigma-1 receptor-IRE1 pathway is beneficial in preclinical models of inflammation and sepsis publication-title: Sci. Transl. Med. contributor: fullname: Gaultier – volume: 16 start-page: 469 year: 2016 end-page: 484 ident: bb0015 article-title: The unfolded protein response in immunity and inflammation publication-title: Nat. Rev. Immunol. contributor: fullname: Blumbergn – volume: 23 start-page: 13623 year: 2022 ident: bb0330 article-title: Antiviral and anti-inflammatory activities of fluoxetine in a SARS-CoV-2 infection mouse model publication-title: Int. J. Mol. Sci. contributor: fullname: Cougoule – volume: 11 start-page: 411 year: 2010 end-page: 418 ident: bb0025 article-title: TLR activation of the transcription factor XBP1 regulates innate immune responses in macrophages publication-title: Nat. Immunol. contributor: fullname: Glimcher – volume: 81 start-page: 10981 year: 2007 end-page: 10990 ident: bb0230 article-title: The coronavirus spike protein induces endoplasmic reticulum stress and upregulation of intracellular chemokine mRNA concentrations publication-title: J. Virol. contributor: fullname: Spaan – volume: 194 start-page: 29 year: 2003 end-page: 38 ident: bb0020 article-title: The X-box binding protein-1 transcription factor is required for plasma cell differentiation and the unfolded protein response publication-title: Immunol. Rev. contributor: fullname: Glimcher – volume: 80 start-page: 9279 year: 2006 end-page: 9287 ident: bb0225 article-title: Modulation of the unfolded protein response by the severe acute respiratory syndrome coronavirus spike protein publication-title: J. Virol. contributor: fullname: Jin – volume: 583 start-page: 459 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0050 article-title: A SARS-CoV-2 protein interaction map reveals targets for drug repurposing publication-title: Nature doi: 10.1038/s41586-020-2286-9 contributor: fullname: Gordon – ident: 10.1016/j.bbadis.2024.167193_bb0105 doi: 10.1101/2020.10.13.334532 – volume: 14 year: 2023 ident: 10.1016/j.bbadis.2024.167193_bb0245 article-title: The unfolded protein response components IRE1α and XBP1 promote human coronavirus infection publication-title: mBio contributor: fullname: Oda – year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0350 article-title: Cannabidiol inhibits SARS-CoV-2 replication through induction of the host ER stress and innate immune responses publication-title: Sci. Adv. doi: 10.1126/sciadv.abi6110 contributor: fullname: Nguyen – volume: 9 start-page: 2433 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0150 article-title: Comparison of transgenic and adenovirus hACE2 mouse models for SARS-CoV-2 infection publication-title: Emerg. Microbes Infect. doi: 10.1080/22221751.2020.1838955 contributor: fullname: Rathnasinghe – volume: 11 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0060 article-title: Repurposing sigma-1 receptor ligands for COVID-19 therapy? publication-title: Front. Pharmacol. doi: 10.3389/fphar.2020.582310 contributor: fullname: Vela – volume: 11 start-page: 411 year: 2010 ident: 10.1016/j.bbadis.2024.167193_bb0025 article-title: TLR activation of the transcription factor XBP1 regulates innate immune responses in macrophages publication-title: Nat. Immunol. doi: 10.1038/ni.1857 contributor: fullname: Martinon – volume: 10 start-page: e42 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0040 article-title: TOGETHER investigators, effect of early treatment with fluvoxamine on risk of emergency care and hospitalisation among patients with COVID-19: the TOGETHER randomised, platform clinical trial, lancet glob publication-title: Health contributor: fullname: Reis – volume: 23 start-page: 13623 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0330 article-title: Antiviral and anti-inflammatory activities of fluoxetine in a SARS-CoV-2 infection mouse model publication-title: Int. J. Mol. Sci. doi: 10.3390/ijms232113623 contributor: fullname: Péricat – volume: 185 start-page: 467 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0090 article-title: SARS-CoV-2 omicron-B. 1.1. 529 leads to widespread escape from neutralizing antibody responses publication-title: Cell doi: 10.1016/j.cell.2021.12.046 contributor: fullname: Dejnirattisai – volume: 117 start-page: 16587 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0180 article-title: Syrian hamsters as a small animal model for SARS-CoV-2 infection and countermeasure development publication-title: Proc. Natl. Acad. Sci. U. S. A. doi: 10.1073/pnas.2009799117 contributor: fullname: Imai – volume: 80 start-page: 554 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0155 article-title: COVID-19 spike-host cell receptor GRP78 binding site prediction publication-title: J. Infect. doi: 10.1016/j.jinf.2020.02.026 contributor: fullname: Ibrahim – volume: 22 start-page: 829 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0265 article-title: TLR2 senses the SARS-CoV-2 envelope protein to produce inflammatory cytokines publication-title: Nat. Immunol. doi: 10.1038/s41590-021-00937-x contributor: fullname: Zheng – volume: 5 year: 2014 ident: 10.1016/j.bbadis.2024.167193_bb0335 article-title: Fluvoxamine alleviates ER stress via induction of Sigma-1 receptor publication-title: Cell Death Dis. doi: 10.1038/cddis.2014.301 contributor: fullname: Omi – volume: 19 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0080 article-title: A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research publication-title: PLoS Biol. doi: 10.1371/journal.pbio.3001091 contributor: fullname: Rihn – volume: 9 start-page: 3047 year: 2019 ident: 10.1016/j.bbadis.2024.167193_bb0185 article-title: IRF and STAT transcription factors-from basic biology to roles in infection, protective immunity, and primary immunodeficiencies publication-title: Front. Immunol. doi: 10.3389/fimmu.2018.03047 contributor: fullname: Mogensen – volume: 8 start-page: 639 year: 2017 ident: 10.1016/j.bbadis.2024.167193_bb0305 article-title: Endoplasmic reticulum stress sensor IRE1α enhances IL-23 expression by human dendritic cells publication-title: Front. Immunol. doi: 10.3389/fimmu.2017.00639 contributor: fullname: Márquez – volume: 29 start-page: 15 year: 2013 ident: 10.1016/j.bbadis.2024.167193_bb0110 article-title: STAR: ultrafast universal RNA-seq aligner publication-title: Bioinformatics doi: 10.1093/bioinformatics/bts635 contributor: fullname: Dobin – volume: 5 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0045 article-title: Fluvoxamine for outpatient management of COVID-19 to prevent hospitalization: a systematic review and meta-analysis publication-title: JAMA Netw. Open doi: 10.1001/jamanetworkopen.2022.6269 contributor: fullname: Lee – volume: 33 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0190 article-title: Evasion of type I interferon by SARS-CoV-2 publication-title: Cell Rep. doi: 10.1016/j.celrep.2020.108234 contributor: fullname: Xia – volume: 13 start-page: e0241522 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0220 article-title: SARS-CoV-2 diverges from other betacoronaviruses in only partially activating the IRE1α/XBP1 endoplasmic reticulum stress pathway in human lung-derived cells publication-title: mBio doi: 10.1128/mbio.02415-22 contributor: fullname: Nguyen – volume: 184 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0255 article-title: COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas publication-title: Cell doi: 10.1016/j.cell.2021.10.023 contributor: fullname: Ren – volume: 16 start-page: 469 year: 2016 ident: 10.1016/j.bbadis.2024.167193_bb0015 article-title: The unfolded protein response in immunity and inflammation publication-title: Nat. Rev. Immunol. doi: 10.1038/nri.2016.62 contributor: fullname: Grootjans – volume: 40 start-page: e133 year: 2012 ident: 10.1016/j.bbadis.2024.167193_bb0125 article-title: Camera: a competitive gene set test accounting for inter-gene correlation publication-title: Nucleic Acids Res. doi: 10.1093/nar/gks461 contributor: fullname: Wu – volume: 21 start-page: 421 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0170 article-title: Mechanisms, regulation and functions of the unfolded protein response publication-title: Nat. Rev. Mol. Cell Biol. doi: 10.1038/s41580-020-0250-z contributor: fullname: Hetz – volume: 194 start-page: 29 year: 2003 ident: 10.1016/j.bbadis.2024.167193_bb0020 article-title: The X-box binding protein-1 transcription factor is required for plasma cell differentiation and the unfolded protein response publication-title: Immunol. Rev. doi: 10.1034/j.1600-065X.2003.00057.x contributor: fullname: Iwakoshi – volume: 6 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0290 article-title: SARS-CoV-2–associated ssRNAs activate inflammation and immunity via TLR7/8 publication-title: JCI Insight doi: 10.1172/jci.insight.150542 contributor: fullname: Salvi – volume: 81 start-page: 10981 year: 2007 ident: 10.1016/j.bbadis.2024.167193_bb0230 article-title: The coronavirus spike protein induces endoplasmic reticulum stress and upregulation of intracellular chemokine mRNA concentrations publication-title: J. Virol. doi: 10.1128/JVI.01033-07 contributor: fullname: Versteeg – volume: 34 start-page: 1645 issue: 3 Suppl year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0250 article-title: Endoplasmic reticulum stress markers in SARS-COV-2 infection and pneumonia: case-control study publication-title: In Vivo doi: 10.21873/invivo.11956 contributor: fullname: Köseler – volume: 17 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0235 article-title: Manipulation of the unfolded protein response: a pharmacological strategy against coronavirus infection publication-title: PLoS Pathog. doi: 10.1371/journal.ppat.1009644 contributor: fullname: Echavarría-Consuegra – volume: 117 start-page: 10970 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0035 article-title: Effective treatment of severe COVID-19 patients with tocilizumab publication-title: Proc. Natl. Acad. Sci. U. S. A. doi: 10.1073/pnas.2005615117 contributor: fullname: Xu – ident: 10.1016/j.bbadis.2024.167193_bb0165 doi: 10.1016/j.celrep.2021.109793 – volume: 80 start-page: 9279 year: 2006 ident: 10.1016/j.bbadis.2024.167193_bb0225 article-title: Modulation of the unfolded protein response by the severe acute respiratory syndrome coronavirus spike protein publication-title: J. Virol. doi: 10.1128/JVI.00659-06 contributor: fullname: Chan – volume: 58 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0140 article-title: An in vitro microneutralization assay for SARS-CoV-2 serology and drug screening publication-title: Curr. Protoc. Microbiol. doi: 10.1002/cpmc.108 contributor: fullname: Amanat – volume: 9 year: 2014 ident: 10.1016/j.bbadis.2024.167193_bb0200 article-title: Psychedelic N, N-dimethyltryptamine and 5-methoxy-N, N-dimethyltryptamine modulate innate and adaptive inflammatory responses through the sigma-1 receptor of human monocyte-derived dendritic cells publication-title: PloS One doi: 10.1371/journal.pone.0106533 contributor: fullname: Szabo – volume: 19 start-page: 155 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0005 article-title: Coronavirus biology and replication: implications for SARS-CoV-2 publication-title: Nat. Rev. Microbiol. doi: 10.1038/s41579-020-00468-6 contributor: fullname: V’kovski – volume: 11 start-page: 23561 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0240 article-title: N-glycosylation profiles of the SARS-CoV-2 spike D614G mutant and its ancestral protein characterized by advanced mass spectrometry publication-title: Sci. Rep. doi: 10.1038/s41598-021-02904-w contributor: fullname: Wang – volume: 185 start-page: 2116 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0095 article-title: Potent cross-reactive antibodies following omicron breakthrough in vaccinees publication-title: Cell doi: 10.1016/j.cell.2022.05.014 contributor: fullname: Nutalai – volume: 11 start-page: 5890 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0315 article-title: The serotonin reuptake inhibitor fluoxetine inhibits SARS-CoV-2 in human lung tissue publication-title: Sci. Rep. doi: 10.1038/s41598-021-85049-0 contributor: fullname: Zimniak – volume: 11 issue: 478 year: 2019 ident: 10.1016/j.bbadis.2024.167193_bb0325 article-title: Modulation of the sigma-1 receptor-IRE1 pathway is beneficial in preclinical models of inflammation and sepsis publication-title: Sci. Transl. Med. doi: 10.1126/scitranslmed.aau5266 contributor: fullname: Rosen – year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0340 article-title: SARS-CoV-2 activates ER stress and unfolded protein response publication-title: BioRxiv contributor: fullname: Rosa-Fernandes – volume: 34 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0275 article-title: IRF1 governs the differential interferon-stimulated gene responses in human monocytes and macrophages by regulating chromatin accessibility publication-title: Cell Rep. doi: 10.1016/j.celrep.2021.108891 contributor: fullname: Song – volume: 22 start-page: 226 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0300 article-title: Bioinformatic analysis and identification of single-stranded RNA sequences recognized by TLR7/8 in the SARS-CoV-2, SARS-CoV, and MERS-CoV genomes publication-title: Microbes Infect. doi: 10.1016/j.micinf.2020.04.009 contributor: fullname: Moreno-Eutimio – year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0085 article-title: Host-directed therapies against early-lineage SARS-CoV-2 retain efficacy against B. 1.1. 7 variant publication-title: BioRxiv contributor: fullname: Reuschl – volume: 271 start-page: 249 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0070 article-title: Repurposing of CNS drugs to treat COVID-19 infection: targeting the sigma-1 receptor publication-title: Eur Arch Psychiatry Clin.Neurosci doi: 10.1007/s00406-020-01231-x contributor: fullname: Hashimoto – volume: 7 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0280 article-title: Sensing of SARS-CoV-2 by pDCs and their subsequent production of IFN-I contribute to macrophage-induced cytokine storm during COVID-19 publication-title: Sci Immunol doi: 10.1126/sciimmunol.add4906 contributor: fullname: Laurent – volume: 10 start-page: 1907 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0030 article-title: Potential adverse effects of dexamethasone therapy on COVID-19 patients: review and recommendations publication-title: Infect. Dis. Ther. doi: 10.1007/s40121-021-00500-z contributor: fullname: Chen – year: 2023 ident: 10.1016/j.bbadis.2024.167193_bb0285 article-title: IRE1α-XBP1 activation elicited by viral singled stranded RNA via TLR8 may modulate lung cytokine induction in SARS-CoV-2 pneumonia publication-title: Genes Immun. doi: 10.1038/s41435-023-00243-6 contributor: fullname: Fernandez – volume: 81 start-page: 2851 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0345 article-title: Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection publication-title: Mol. Cell doi: 10.1016/j.molcel.2021.05.023 contributor: fullname: Kamel – volume: 184 start-page: 92 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0075 article-title: Identification of required host factors for SARS-CoV-2 infection in human cells publication-title: Cell doi: 10.1016/j.cell.2020.10.030 contributor: fullname: Daniloski – volume: 14 start-page: 999 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0270 article-title: SARS-CoV-2 envelope (E) protein binds and activates TLR2 pathway: a novel molecular target for COVID-19 interventions publication-title: Viruses doi: 10.3390/v14050999 contributor: fullname: Planès – volume: 370 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0055 article-title: Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms publication-title: Science doi: 10.1126/science.abe9403 contributor: fullname: Gordon – volume: 24 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0295 article-title: SARS-CoV-2, SARS-CoV-1, and HIV-1 derived ssRNA sequences activate the NLRP3 inflammasome in human macrophages through a non-classical pathway publication-title: iScience doi: 10.1016/j.isci.2021.102295 contributor: fullname: Campbell – volume: 262 start-page: 48 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0145 article-title: But mouse, you are not lone”: on some severe acute respiratory syndrome coronavirus 2 variants infecting mice publication-title: ILAR J doi: 10.1093/ilar/ilab031 contributor: fullname: Kuiper – volume: 30 start-page: 269 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0215 article-title: Remdesivir and chloroquine effectively inhibit the recently emerged novel coronavirus (2019-nCoV) in vitro publication-title: Cell Res. doi: 10.1038/s41422-020-0282-0 contributor: fullname: Wang – volume: 12 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0310 article-title: Low-dose fluvoxamine modulates endocytic trafficking of SARS-CoV-2 spike protein: a potential mechanism for anti-COVID-19 protection by antidepressants publication-title: Front. Pharmacol. doi: 10.3389/fphar.2021.787261 contributor: fullname: Glebov – volume: 31 start-page: 1290 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0130 article-title: Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N publication-title: Genome Res. doi: 10.1101/gr.275193.120 contributor: fullname: Zhang – volume: 83 start-page: 2559 year: 2023 ident: 10.1016/j.bbadis.2024.167193_bb0135 article-title: Enhanced SARS-CoV-2 entry via UPR-dependent AMPK-related kinase NUAK2 publication-title: Mol. Cell doi: 10.1016/j.molcel.2023.06.020 contributor: fullname: Prasad – volume: 15 start-page: 550 issue: 15 year: 2014 ident: 10.1016/j.bbadis.2024.167193_bb0115 article-title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 publication-title: Genome Biol. doi: 10.1186/s13059-014-0550-8 contributor: fullname: Love – volume: 324 start-page: 2292 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0195 article-title: Fluvoxamine vs placebo and clinical deterioration in outpatients with symptomatic COVID-19: a randomized clinical trial publication-title: JAMA doi: 10.1001/jama.2020.22760 contributor: fullname: Lenze – volume: 133 issue: 17 year: 2023 ident: 10.1016/j.bbadis.2024.167193_bb0355 article-title: Inflammatory ER stress responses dictate the immunopathogenic progression of systemic candidiasis publication-title: J. Clin. Invest. doi: 10.1172/JCI167359 contributor: fullname: Awasthi – volume: 585 start-page: 273 issue: 7824 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0210 article-title: Clinical benefit of remdesivir in rhesus macaques infected with SARS-CoV-2 publication-title: Nature doi: 10.1038/s41586-020-2423-5 contributor: fullname: Williamson – volume: 71 start-page: 2428 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0175 article-title: Simulation of the clinical and pathological manifestations of coronavirus disease 2019 (COVID-19) in a golden Syrian hamster model: implications for disease pathogenesis and transmissibility publication-title: Clin. Infect. Dis. doi: 10.1093/cid/ciaa644 contributor: fullname: Chan – volume: 7 start-page: 1 year: 2017 ident: 10.1016/j.bbadis.2024.167193_bb0205 article-title: Fluvoxamine stimulates oligodendrogenesis of cultured neural stem cells and attenuates inflammation and demyelination in an animal model of multiple sclerosis publication-title: Sci. Rep. doi: 10.1038/s41598-017-04968-z contributor: fullname: Ghareghani – volume: 93 start-page: 2476 year: 2021 ident: 10.1016/j.bbadis.2024.167193_bb0260 article-title: In silico analyses on the comparative sensing of SARS-CoV-2 mRNA by the intracellular TLRs of humans publication-title: J. Med. Virol. doi: 10.1002/jmv.26776 contributor: fullname: Choudhury – volume: 286 start-page: 241 year: 2019 ident: 10.1016/j.bbadis.2024.167193_bb0010 article-title: Endoplasmic reticulum stress signalling–from basic mechanisms to clinical applications publication-title: FEBS J. doi: 10.1111/febs.14608 contributor: fullname: Lmanza – volume: 13 start-page: 1 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0160 article-title: The stress-inducible ER chaperone GRP78/BiP is upregulated during SARS-CoV-2 infection and acts as a pro-viral protein publication-title: Nat. Commun. doi: 10.1038/s41467-022-34065-3 contributor: fullname: Shin – volume: 11 year: 2020 ident: 10.1016/j.bbadis.2024.167193_bb0065 article-title: PB28, the sigma-1 and sigma-2 receptors modulator with potent anti–SARS-CoV-2 activity: a review about its pharmacological properties and structure affinity relationships publication-title: Front. Pharmacol. doi: 10.3389/fphar.2020.589810 contributor: fullname: Abate – volume: 26 start-page: 139 year: 2010 ident: 10.1016/j.bbadis.2024.167193_bb0120 article-title: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp616 contributor: fullname: Robinson – volume: 13 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0320 article-title: Profiling differential effects of five selective serotonin reuptake inhibitors on TLRs-dependent and-independent IL-6 production in immune cells identifies fluoxetine as preferred anti-inflammatory drug candidate publication-title: Front. Pharmacol. doi: 10.3389/fphar.2022.874375 contributor: fullname: Takenaka – volume: 13 start-page: 3921 year: 2022 ident: 10.1016/j.bbadis.2024.167193_bb0100 article-title: Characterization of SARS-CoV-2 spike mutations important for infection of mice and escape from human immune sera publication-title: Nat. Commun. doi: 10.1038/s41467-022-30763-0 contributor: fullname: Rathnasinghe |
SSID | ssj0000670 |
Score | 2.4791346 |
Snippet | SARS-CoV-2 infection can cause severe pneumonia, wherein exacerbated inflammation plays a major role. This is reminiscent of the process commonly termed... |
SourceID | proquest crossref pubmed elsevier |
SourceType | Aggregation Database Index Database Publisher |
StartPage | 167193 |
SubjectTerms | Animals COVID-19 COVID-19 - immunology COVID-19 - metabolism COVID-19 - pathology COVID-19 - virology Cytokines Cytokines - metabolism Endoribonucleases - genetics Endoribonucleases - metabolism Female Fluvoxamine Humans Mesocricetus Mice Mice, Inbred C57BL Pneumonia Protein Serine-Threonine Kinases - genetics Protein Serine-Threonine Kinases - metabolism SARS-CoV-2 - metabolism Signal Transduction TLR Transcription factors Unfolded Protein Response Variants of concern Viral sepsis Virus Replication X-Box Binding Protein 1 - genetics X-Box Binding Protein 1 - metabolism |
Title | The IRE1α-XBP1 arm of the unfolded protein response is a host factor activated in SARS-CoV-2 infection |
URI | https://dx.doi.org/10.1016/j.bbadis.2024.167193 https://www.ncbi.nlm.nih.gov/pubmed/38648902 https://www.proquest.com/docview/3045115834 |
Volume | 1870 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1bSxwxFD54QexLUavt1gsp-BrXTDLZzOO6KKtSKa7KvoVkkpGRdlbW3UJf-p_6R_qbPJnMSIWK4OMMCRO-czjny5wbwH5PuESl3tHMJQUV1iQ0U85Sw5wU0iuUeygU_nohh9fibJyOF2DQ1sKEtMrG9kebXlvr5k23QbN7X5bd0WEW2muhfxdhslyC9_ZldEchVrvcPz0fXvxrkOtfLbiehg1tBV2d5mWtcWXo252IAyZ7dQT6_x7qJQZae6KTNXjfUEjSj6dchwVfbcBKHCr5awNWB-0Mtw9wi1pATi-P2d8_dHz0jREz_UEmBUHWR-aoWt-dd6Ru1VBWZBrTZT0pH4ghofqDxGk8JBQ__ERS6gguG_UvR3QwuaEJaTO5qk24Pjm-GgxpM1qB5pyxGUWyqpwSqWDeq9ASMEszz53MkqKwRrqE5cwI6wqXMpvnh7zgXHqXZx4vgEUu-RYsVZPKfwKCV2jPpBPM8FRYbowphGXcemNThYSuA7SFU9_HDhq6TS270xF-HeDXEf4O9FrM9TNN0GjkX9n5pRWRRpxD5MNUfjJ_0CEcjNRXcdGBj1F2T2fhSooQbP385u9uw7vwFBPIdmBpNp37XaQqM7sHiwe_2V6jkI81geaB |
link.rule.ids | 314,780,784,4502,24116,27924,27925,45585,45679 |
linkProvider | Elsevier |
linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1La9wwEB5CQkkvIUkf2TxaFXpVNrJkrXzcLgm77SaUbFL2JiRLDg6tN-yj0Ev-U_5IflNHll1SaCn0aktYfDPMfPK8AN73hEtU6h3NXFJQYU1CM-UsNcxJIb1CuYdC4fMLObwWH6fpdA0GbS1MSKtsbH-06bW1bp50GzS7d2XZnZxkob0W-ncRJssleG_fECmyX1Tq43v21BzXP1pwNQ3L2_q5OsnLWuPK0LU7EcdM9ur485_909_4Z-2HzrZhqyGQpB_PuANrvtqFZ3Gk5I9d2By0E9xewA3qABldnrLHBzr98JkRM_9GZgVBzkdWqFhfnXekbtRQVmQek2U9KRfEkFD7QeIsHhJKH74jJXUEl036lxM6mH2hCWnzuKqXcH12ejUY0mawAs05Y0uKVFU5JVLBvFehIWCWZp47mSVFYY10CcuZEdYVLmU2z094wbn0Ls88Xv-KXPJXsF7NKr8HBC_QnkknmOGpsNwYUwjLuPXGpgrpXAdoC6e-i_0zdJtYdqsj_DrAryP8Hei1mOvf9ECjif_HznetiDTiHOIepvKz1UKHYDASX8VFB15H2f06C1dShFDr_n9_9y1sDq_Ox3o8uvh0AM_Dm5hKdgjry_nKHyFpWdo3tVL-BEfy51o |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=The+IRE1%CE%B1-XBP1+arm+of+the+unfolded+protein+response+is+a+host+factor+activated+in+SARS-CoV-2+infection&rft.jtitle=Biochimica+et+biophysica+acta.+Molecular+basis+of+disease&rft.au=Fern%C3%A1ndez%2C+Jose+Javier&rft.au=Mar%C3%ADn%2C+Arturo&rft.au=Rosales%2C+Romel&rft.au=Penrice-Randal%2C+Rebekah&rft.date=2024-06-01&rft.issn=0925-4439&rft.volume=1870&rft.issue=5&rft.spage=167193&rft_id=info:doi/10.1016%2Fj.bbadis.2024.167193&rft.externalDBID=n%2Fa&rft.externalDocID=10_1016_j_bbadis_2024_167193 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0925-4439&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0925-4439&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0925-4439&client=summon |