Fine mapping and characterization of the Crinkled Dwarf gene in cotton
Cotton (Gossypium) is an important natural fiber crop worldwide. Plant height, which is an important commercial cotton breeding trait, is also useful for plant architecture research. Crinkled Dwarf (cr), a natural mutant of Sea Island cotton (Gossypium barbadense L.), simultaneously displays crinkle...
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| Published in | Industrial crops and products Vol. 184; p. 115034 |
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| Main Authors | , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Elsevier B.V
15.09.2022
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| Abstract | Cotton (Gossypium) is an important natural fiber crop worldwide. Plant height, which is an important commercial cotton breeding trait, is also useful for plant architecture research. Crinkled Dwarf (cr), a natural mutant of Sea Island cotton (Gossypium barbadense L.), simultaneously displays crinkled leaves and dwarfing. However, the genes controlling cr have not been characterized, and the molecular mechanism of the trait remains unknown. In this study, genetic analysis indicated that cr was likely controlled by a major recessive gene, although the cr phenotype was sensitive to environmental factors, including light intensity. Using bulked-segregant analysis and recombinant methods, the cr gene was mapped to a 35.8-kbp genomic interval on chromosome D03 that contained three annotated protein-coding genes. Comparative transcriptome analysis showed that cr enhanced stress/disease resistance and repressed plant development/growth. Endogenous phytohormone measurements showed that most auxin compounds were decreased in the cr mutant. Although the cr mutation was insensitive to exogenous auxin, gibberellin and cytokinin treatments promoted and repressed main stem elongation, respectively. However, no hormone treatment could fully rescue the crinkled leaf phenotype. These findings will contribute to the breeding of cotton lines with improved plant architecture or yield, and aid in the dissection of the genetic basis of cr.
•The Crinkled Dwarf (cr) mutant was controlled by a major recessive locus.•The cr phenotype was sensitive to environmental factors such as light intensity.•The cr gene was mapped to a 35.8-kbp genomic interval on chromosome D03.•Ttranscriptome analysis showed that stress/disease resistance was enhanced in the cr mutation.•The plant height of cr was sensitive to most of exogenous phytohormones treatments. |
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| AbstractList | Cotton (Gossypium) is an important natural fiber crop worldwide. Plant height, which is an important commercial cotton breeding trait, is also useful for plant architecture research. Crinkled Dwarf (cr), a natural mutant of Sea Island cotton (Gossypium barbadense L.), simultaneously displays crinkled leaves and dwarfing. However, the genes controlling cr have not been characterized, and the molecular mechanism of the trait remains unknown. In this study, genetic analysis indicated that cr was likely controlled by a major recessive gene, although the cr phenotype was sensitive to environmental factors, including light intensity. Using bulked-segregant analysis and recombinant methods, the cr gene was mapped to a 35.8-kbp genomic interval on chromosome D03 that contained three annotated protein-coding genes. Comparative transcriptome analysis showed that cr enhanced stress/disease resistance and repressed plant development/growth. Endogenous phytohormone measurements showed that most auxin compounds were decreased in the cr mutant. Although the cr mutation was insensitive to exogenous auxin, gibberellin and cytokinin treatments promoted and repressed main stem elongation, respectively. However, no hormone treatment could fully rescue the crinkled leaf phenotype. These findings will contribute to the breeding of cotton lines with improved plant architecture or yield, and aid in the dissection of the genetic basis of cr.
•The Crinkled Dwarf (cr) mutant was controlled by a major recessive locus.•The cr phenotype was sensitive to environmental factors such as light intensity.•The cr gene was mapped to a 35.8-kbp genomic interval on chromosome D03.•Ttranscriptome analysis showed that stress/disease resistance was enhanced in the cr mutation.•The plant height of cr was sensitive to most of exogenous phytohormones treatments. |
| ArticleNumber | 115034 |
| Author | Chen, Wei Fang, Shengtao Li, Qiulin Wang, Weiran Zhu, Shouhong Li, Yan He, Liangrong Zhang, Yongshan Yao, Jinbo Pan, Jingwen Kong, Jie |
| Author_xml | – sequence: 1 givenname: Shengtao surname: Fang fullname: Fang, Shengtao organization: State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, Henan, China – sequence: 2 givenname: Jinbo surname: Yao fullname: Yao, Jinbo organization: State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, Henan, China – sequence: 3 givenname: Yan surname: Li fullname: Li, Yan organization: State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, Henan, China – sequence: 4 givenname: Shouhong surname: Zhu fullname: Zhu, Shouhong organization: State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, Henan, China – sequence: 5 givenname: Jingwen surname: Pan fullname: Pan, Jingwen organization: State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, Henan, China – sequence: 6 givenname: Qiulin surname: Li fullname: Li, Qiulin organization: State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, Henan, China – sequence: 7 givenname: Weiran surname: Wang fullname: Wang, Weiran organization: Institute of Economic Crops, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China – sequence: 8 givenname: Jie surname: Kong fullname: Kong, Jie organization: Institute of Economic Crops, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China – sequence: 9 givenname: Liangrong surname: He fullname: He, Liangrong organization: School of Plant Science, Tarim University, Alar, 843300, China – sequence: 10 givenname: Yongshan surname: Zhang fullname: Zhang, Yongshan email: 13938698299@163.com organization: State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, Henan, China – sequence: 11 givenname: Wei surname: Chen fullname: Chen, Wei email: 15093906547@163.com organization: State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, Henan, China |
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| Keywords | Fine mapping Crinkled leaf Cotton (Gossypium spp.) Dwarf |
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