Taxonomic reclassification of the fungal pathogen causing dry berry disease of caneberries into the division Ascomycota as Monilinia rubi

As molecular genetic techniques improve and sequence data become available for more fungal species, taxonomic classifications historically based upon growth morphology alone are being revisited and occasionally reclassified. Herein, we present such an instance for the fungal pathogen that causes dry...

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Published inPlant disease
Main Authors Weldon, Bill, McGhee, Gayle C, Jones, Lisa A, Stockwell, Virginia
Format Journal Article
LanguageEnglish
Published United States 01.11.2022
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ISSN0191-2917
DOI10.1094/PDIS-11-21-2618-SR

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Abstract As molecular genetic techniques improve and sequence data become available for more fungal species, taxonomic classifications historically based upon growth morphology alone are being revisited and occasionally reclassified. Herein, we present such an instance for the fungal pathogen that causes dry berry disease of caneberries. The organism was previously described as the basidiomycete fungus based upon the pathogen's production of Rhizoctonia-like angular branching hyphae. Utilizing molecular genetic techniques unavailable when the pathogen was first characterized in 1959, three housekeeping gene regions (ITS, β-tubulin, and G3PDH) were sequenced across 13 contemporary dry berry isolates, as well as the original 1959 type strain, CBS382.59. The resulting neighbor-joining, maximum likelihood, and Bayesian phylogenies for single and multi-locus sequences provide strong evidence that the dry berry pathogen was misclassified. This data, in addition to revisiting macroscopic and microscopic growth morphology, again comparing contemporary dry berry isolates to the CBS382.59 type strain, suggests that the causal organism is a new species within the genus that we propose be classified as . A transition from designation as a basidiomycete fungus to an ascomycete fungus could have implications on chemical management decisions, as well as the assumptions made about cell structure and the pathogens putative life cycle.
AbstractList As molecular genetic techniques improve and sequence data become available for more fungal species, taxonomic classifications historically based upon growth morphology alone are being revisited and occasionally reclassified. Herein, we present such an instance for the fungal pathogen that causes dry berry disease of caneberries. The organism was previously described as the basidiomycete fungus based upon the pathogen's production of Rhizoctonia-like angular branching hyphae. Utilizing molecular genetic techniques unavailable when the pathogen was first characterized in 1959, three housekeeping gene regions (ITS, β-tubulin, and G3PDH) were sequenced across 13 contemporary dry berry isolates, as well as the original 1959 type strain, CBS382.59. The resulting neighbor-joining, maximum likelihood, and Bayesian phylogenies for single and multi-locus sequences provide strong evidence that the dry berry pathogen was misclassified. This data, in addition to revisiting macroscopic and microscopic growth morphology, again comparing contemporary dry berry isolates to the CBS382.59 type strain, suggests that the causal organism is a new species within the genus that we propose be classified as . A transition from designation as a basidiomycete fungus to an ascomycete fungus could have implications on chemical management decisions, as well as the assumptions made about cell structure and the pathogens putative life cycle.
Author Weldon, Bill
Jones, Lisa A
Stockwell, Virginia
McGhee, Gayle C
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  fullname: Weldon, Bill
  email: weldonw@oregonstate.edu
  organization: USDA Agricultural Research Service, 17123, Horticultural Crops Research Unit, Corvallis, Oregon, United States; weldonw@oregonstate.edu
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  givenname: Gayle C
  surname: McGhee
  fullname: McGhee, Gayle C
  email: gayle.mcghee@usda.gov
  organization: USDA ARS, 17123, Horticultural Crops Research Unit, 3420 NW Orchard Ave, Corvallis, Oregon, United States, 97330; gayle.mcghee@usda.gov
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  givenname: Lisa A
  surname: Jones
  fullname: Jones, Lisa A
  email: lisa.jones@nwplant.com
  organization: Pacific Berries, LLC, Ferndale, Washington, United States; lisa.jones@nwplant.com
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  givenname: Virginia
  surname: Stockwell
  fullname: Stockwell, Virginia
  email: virginia.stockwell@usda.gov
  organization: USDA ARS, Horticultural Crops Research Unit, Horticultural Crops Research Unit, 3420 NW Orchard Ave., Corvallis, Oregon, United States, 97330; virginia.stockwell@usda.gov
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Keywords Fungi
Fruit
Etiology
Crop Type
small fruits
Causal Agent
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PublicationTitle Plant disease
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Snippet As molecular genetic techniques improve and sequence data become available for more fungal species, taxonomic classifications historically based upon growth...
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Title Taxonomic reclassification of the fungal pathogen causing dry berry disease of caneberries into the division Ascomycota as Monilinia rubi
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