Allele frequency data for 15 autosomal strs and ancestral proportions using aims-indels in the shuar ethnic group from Ecuador

The ethnic group Shuar is located in Ecuador. To identify their genetic composition, 46 ancestry-informative insertion deletion markers (AIM-INDELs) were used. Also, characterization of 15 tandem repeats (STRs) in the AmpFISTR Identifiler Kit were applied. Forensic parameters showed a matching proba...

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Published inForensic science international. Genetics supplement series Vol. 7; no. 1; pp. 65 - 67
Main Authors Paz-y-Miño, C., Astudillo-González, O., Maldonado-Oyervide, D., López-Cortés, A., Pérez-Villa, A., Armendáriz-Castillo, I., García-Cárdenas, J.M., Guerrero, S., Guevara-Ramírez, P., Yumiceba, V., Zambrano, A.K., Leone, P.E.
Format Journal Article
LanguageEnglish
Published Elsevier B.V 01.12.2019
Subjects
AIM-INDELs
Ecuador
Shuar
STRs
Ecuador
Shuar
AIM-INDELs
STRs
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Abstract The ethnic group Shuar is located in Ecuador. To identify their genetic composition, 46 ancestry-informative insertion deletion markers (AIM-INDELs) were used. Also, characterization of 15 tandem repeats (STRs) in the AmpFISTR Identifiler Kit were applied. Forensic parameters showed a matching probability of 0.1535, a power of discrimination of 0.8465, a polymorphism information content of 0.6584, probability of exclusion of 0.415 and a typical paternity index of 1.78. The Shuar are not influenced by admixture population events, being a Native American group 98.7%, along with a genetic diversity of 0.699346+/-0.356964.
AbstractList The ethnic group Shuar is located in Ecuador. To identify their genetic composition, 46 ancestry-informative insertion deletion markers (AIM-INDELs) were used. Also, characterization of 15 tandem repeats (STRs) in the AmpFISTR Identifiler Kit were applied. Forensic parameters showed a matching probability of 0.1535, a power of discrimination of 0.8465, a polymorphism information content of 0.6584, probability of exclusion of 0.415 and a typical paternity index of 1.78. The Shuar are not influenced by admixture population events, being a Native American group 98.7%, along with a genetic diversity of 0.699346+/-0.356964.
Author Astudillo-González, O.
López-Cortés, A.
Guevara-Ramírez, P.
Pérez-Villa, A.
Armendáriz-Castillo, I.
García-Cárdenas, J.M.
Leone, P.E.
Maldonado-Oyervide, D.
Guerrero, S.
Paz-y-Miño, C.
Yumiceba, V.
Zambrano, A.K.
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Cites_doi 10.1038/s41598-019-45723-w
10.1016/j.fsigen.2010.08.016
10.1016/j.fsigen.2008.08.003
10.1371/journal.pgen.1004572
10.1371/journal.pone.0029684
10.1111/j.1755-0998.2010.02847.x
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References Pereira, Phillips, Pinto (bib0030) 2012; 7
Zambrano, Gaviria, Cobos-Navarrete (bib0015) 2019; 9
(bib0040) 1999
González-Andrade, Roewer, Willuweit (bib0045) 2009; 3
Paz-y-Miño, Guillen Sacoto, Leone (bib0005) 2015; 9
INEC (bib0020) 2010
Ruíz-Linares, Adhikari, Acuña-Alonzo, Quinto-Sánchez, Jaramillo, Arias, González-José (bib0010) 2014; 10
Geppert, Baeta, Núñez, Martínez-Jarreta, Zweynert, Cruz, Roewer (bib0025) 2011; 5
Calisaya (bib0050) 2010
Excoffier, Lischer (bib0035) 2010; 10
Calisaya (10.1016/j.fsigss.2019.09.026_bib0050) 2010
INEC (10.1016/j.fsigss.2019.09.026_bib0020) 2010
González-Andrade (10.1016/j.fsigss.2019.09.026_bib0045) 2009; 3
Pereira (10.1016/j.fsigss.2019.09.026_bib0030) 2012; 7
Ruíz-Linares (10.1016/j.fsigss.2019.09.026_bib0010) 2014; 10
Geppert (10.1016/j.fsigss.2019.09.026_bib0025) 2011; 5
(10.1016/j.fsigss.2019.09.026_bib0040) 1999
Excoffier (10.1016/j.fsigss.2019.09.026_bib0035) 2010; 10
Zambrano (10.1016/j.fsigss.2019.09.026_bib0015) 2019; 9
Paz-y-Miño (10.1016/j.fsigss.2019.09.026_bib0005) 2015; 9
References_xml – year: 2010
  ident: bib0050
  article-title: Creación De Una Base De Datos De Frecuencias Alélicas En Población Mestiza De La Región Andina Bolivariana, Tesis De Licenciatura En Bioquímica, Universidad Mayor De San Andrés [Online]
  contributor:
    fullname: Calisaya
– volume: 9
  start-page: 9
  year: 2015
  end-page: 17
  ident: bib0005
  article-title: Genetics and genomic medicine in Ecuador
  publication-title: Mol. Genet. Genomic Med.
  contributor:
    fullname: Leone
– volume: 3
  start-page: e83
  year: 2009
  end-page: e91
  ident: bib0045
  article-title: Y-STR variation among ethnic groups from Ecuador: mestizos, kichwas, Afro-Ecuadorians and Waoranis
  publication-title: Forensic Sci. Int. Genet.
  contributor:
    fullname: Willuweit
– volume: 9
  start-page: 9247
  year: 2019
  ident: bib0015
  article-title: The three-hybrid genetic composition of an Ecuadorian population using AIMs-InDels compared with autosomes, mitochondrial DNA and Y chromosome data
  publication-title: Sci. Rep.
  contributor:
    fullname: Cobos-Navarrete
– year: 2010
  ident: bib0020
  article-title: Censo De Población Y Vivienda [Online]
  contributor:
    fullname: INEC
– volume: 5
  start-page: 100
  year: 2011
  end-page: 104
  ident: bib0025
  article-title: Hierarchical Y-SNP assay to study the hidden diversity and phylogenetic relationship of native populations in South America
  publication-title: Forensic Sci. Int. Genet.
  contributor:
    fullname: Roewer
– volume: 10
  start-page: 564
  year: 2010
  end-page: 567
  ident: bib0035
  article-title: Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
  publication-title: Mol. Ecol. Resour.
  contributor:
    fullname: Lischer
– year: 1999
  ident: bib0040
  article-title: Promega, PowerStats A. Computer Program for the Analysis of Population Statistics
– volume: 10
  year: 2014
  ident: bib0010
  article-title: Admixture in Latin America: geographic structure, phenotypic diversity and self-perception of ancestry based on 7,342 individuals
  publication-title: PLoS Genet.
  contributor:
    fullname: González-José
– volume: 7
  year: 2012
  ident: bib0030
  article-title: Straightforward inference of ancestry and admixture proportions through ancestry-informative insertion deletion multiplexing
  publication-title: PLoS One
  contributor:
    fullname: Pinto
– year: 2010
  ident: 10.1016/j.fsigss.2019.09.026_bib0020
  contributor:
    fullname: INEC
– volume: 9
  start-page: 9247
  year: 2019
  ident: 10.1016/j.fsigss.2019.09.026_bib0015
  article-title: The three-hybrid genetic composition of an Ecuadorian population using AIMs-InDels compared with autosomes, mitochondrial DNA and Y chromosome data
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-019-45723-w
  contributor:
    fullname: Zambrano
– volume: 5
  start-page: 100
  year: 2011
  ident: 10.1016/j.fsigss.2019.09.026_bib0025
  article-title: Hierarchical Y-SNP assay to study the hidden diversity and phylogenetic relationship of native populations in South America
  publication-title: Forensic Sci. Int. Genet.
  doi: 10.1016/j.fsigen.2010.08.016
  contributor:
    fullname: Geppert
– volume: 3
  start-page: e83
  year: 2009
  ident: 10.1016/j.fsigss.2019.09.026_bib0045
  article-title: Y-STR variation among ethnic groups from Ecuador: mestizos, kichwas, Afro-Ecuadorians and Waoranis
  publication-title: Forensic Sci. Int. Genet.
  doi: 10.1016/j.fsigen.2008.08.003
  contributor:
    fullname: González-Andrade
– volume: 10
  year: 2014
  ident: 10.1016/j.fsigss.2019.09.026_bib0010
  article-title: Admixture in Latin America: geographic structure, phenotypic diversity and self-perception of ancestry based on 7,342 individuals
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1004572
  contributor:
    fullname: Ruíz-Linares
– volume: 7
  year: 2012
  ident: 10.1016/j.fsigss.2019.09.026_bib0030
  article-title: Straightforward inference of ancestry and admixture proportions through ancestry-informative insertion deletion multiplexing
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0029684
  contributor:
    fullname: Pereira
– year: 1999
  ident: 10.1016/j.fsigss.2019.09.026_bib0040
– volume: 10
  start-page: 564
  year: 2010
  ident: 10.1016/j.fsigss.2019.09.026_bib0035
  article-title: Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
  publication-title: Mol. Ecol. Resour.
  doi: 10.1111/j.1755-0998.2010.02847.x
  contributor:
    fullname: Excoffier
– volume: 9
  start-page: 9
  year: 2015
  ident: 10.1016/j.fsigss.2019.09.026_bib0005
  article-title: Genetics and genomic medicine in Ecuador
  publication-title: Mol. Genet. Genomic Med.
  contributor:
    fullname: Paz-y-Miño
– year: 2010
  ident: 10.1016/j.fsigss.2019.09.026_bib0050
  contributor:
    fullname: Calisaya
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SubjectTerms AIM-INDELs
Ecuador
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Title Allele frequency data for 15 autosomal strs and ancestral proportions using aims-indels in the shuar ethnic group from Ecuador
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