Kinetic characterisation of the FAD dependent monooxygenase TropB and investigation of its biotransformation potential

Achieving regio-specific hydroxylation of aromatic compounds remains a major challenge in synthetic chemistry. By contrast, this transformation is readily accomplished in nature through the action of FAD-dependant monooxygenase enzymes. Here, we report the kinetic characterisation of one such enzyme...

Full description

Saved in:
Bibliographic Details
Published inRSC advances Vol. 5; no. 62; pp. 49987 - 49995
Main Authors Abood, Amira, Al-Fahad, Ahmed, Scott, Alan, Hosny, Alaa El-Dein M. S., Hashem, Amal M., Fattah, Azza M. A., Race, Paul R., Simpson, Thomas J., Cox, Russell J.
Format Journal Article
LanguageEnglish
Published 01.01.2015
Subjects
Online AccessGet full text

Cover

Loading…
Abstract Achieving regio-specific hydroxylation of aromatic compounds remains a major challenge in synthetic chemistry. By contrast, this transformation is readily accomplished in nature through the action of FAD-dependant monooxygenase enzymes. Here, we report the kinetic characterisation of one such enzyme, TropB, from the stipitatic acid biosynthetic pathway. Analogues of the TropB natural substrate, 3-methyl-orcinaldehyde, were synthesised and used to examine the substrate selectivity of this enzyme. TropB displays broad substrate tolerance, for instance accepting single-ring aromatic substrates containing a range of C-1 substituents with varying electronic and steric properties. These include nitro, nitrosyl, alkyl, and aryl keto groups. Bicyclic substrates, however, were rejected by TropB. Additionally, C-5 substituents on single-ring aromatic substrates were not tolerated whereas the presence of a 6-methyl group was found to be important for substrate binding. Docking studies were employed to investigate and understand the broad substrate selectivity of TropB and identifies the key structural elements of its substrates. Our work has shown that TropB is an attractive target for biocatalyst engineering and industrial aromatic hydroxylation.
AbstractList Achieving regio-specific hydroxylation of aromatic compounds remains a major challenge in synthetic chemistry. By contrast, this transformation is readily accomplished in nature through the action of FAD-dependant monooxygenase enzymes. Here, we report the kinetic characterisation of one such enzyme, TropB, from the stipitatic acid biosynthetic pathway. Analogues of the TropB natural substrate, 3-methyl-orcinaldehyde, were synthesised and used to examine the substrate selectivity of this enzyme. TropB displays broad substrate tolerance, for instance accepting single-ring aromatic substrates containing a range of C-1 substituents with varying electronic and steric properties. These include nitro, nitrosyl, alkyl, and aryl keto groups. Bicyclic substrates, however, were rejected by TropB. Additionally, C-5 substituents on single-ring aromatic substrates were not tolerated whereas the presence of a 6-methyl group was found to be important for substrate binding. Docking studies were employed to investigate and understand the broad substrate selectivity of TropB and identifies the key structural elements of its substrates. Our work has shown that TropB is an attractive target for biocatalyst engineering and industrial aromatic hydroxylation.
Author Abood, Amira
Scott, Alan
Simpson, Thomas J.
Hosny, Alaa El-Dein M. S.
Al-Fahad, Ahmed
Fattah, Azza M. A.
Race, Paul R.
Hashem, Amal M.
Cox, Russell J.
Author_xml – sequence: 1
  givenname: Amira
  surname: Abood
  fullname: Abood, Amira
  organization: School, of Chemistry, University of Bristol, UK, Chemistry of Natural and Microbial Products Department
– sequence: 2
  givenname: Ahmed
  surname: Al-Fahad
  fullname: Al-Fahad, Ahmed
  organization: School, of Chemistry, University of Bristol, UK, Chemistry Department
– sequence: 3
  givenname: Alan
  surname: Scott
  fullname: Scott, Alan
  organization: School, of Chemistry, University of Bristol, UK
– sequence: 4
  givenname: Alaa El-Dein M. S.
  surname: Hosny
  fullname: Hosny, Alaa El-Dein M. S.
  organization: Microbiology Department, Faculty of Pharmacy, Cairo University, Cairo, Egypt
– sequence: 5
  givenname: Amal M.
  surname: Hashem
  fullname: Hashem, Amal M.
  organization: Chemistry of Natural and Microbial Products Department, National Research Centre, Cairo, Egypt
– sequence: 6
  givenname: Azza M. A.
  surname: Fattah
  fullname: Fattah, Azza M. A.
  organization: Chemistry of Natural and Microbial Products Department, National Research Centre, Cairo, Egypt
– sequence: 7
  givenname: Paul R.
  surname: Race
  fullname: Race, Paul R.
  organization: School of Biochemistry, University of Bristol, UK
– sequence: 8
  givenname: Thomas J.
  surname: Simpson
  fullname: Simpson, Thomas J.
  organization: School, of Chemistry, University of Bristol, UK
– sequence: 9
  givenname: Russell J.
  surname: Cox
  fullname: Cox, Russell J.
  organization: School, of Chemistry, University of Bristol, UK, Institut für Organische Chemie
BookMark eNpNUMtOwzAQtFCRKKUXvsBHhBTwI3HrYymUVyUkVM6R42xao8QOtlvRv8eoCNjLrjSzsztzigbWWUDonJIrSri8nhevMyKE5E9HaMhILjJGhBz8m0_QOIR3kkoUlAk6RLtnYyEajfVGeaUjeBNUNM5i1-C4AbyY3eIaerA12Ig7Z5373K_BqgB45V1_g5WtsbE7CNGsf1dNDLgyLnplQ-N8dwB6F5OKUe0ZOm5UG2D800fobXG3mj9ky5f7x_lsmWlOSMwYk7KqqcoJJGNCNxwKVknBC0GSARCi5lTTOs8nAFNIQA60ELIgUynpRPERujjo9t59bNOLZWeChrZVFtw2lHSS7uSSsDxRLw9U7V0IHpqy96ZTfl9SUn7nW_7ly78AQT5vuw
CitedBy_id crossref_primary_10_1002_ange_201802176
crossref_primary_10_1021_acscatal_1c05196
crossref_primary_10_1021_acs_chemrev_3c00215
crossref_primary_10_1021_jacs_3c01681
crossref_primary_10_1002_ejoc_202201224
crossref_primary_10_1002_chem_202003215
crossref_primary_10_1016_j_biotechadv_2021_107712
crossref_primary_10_1021_acscatal_8b04575
crossref_primary_10_1038_nchem_2879
crossref_primary_10_1111_cbdd_13443
crossref_primary_10_1016_j_jsps_2018_03_010
crossref_primary_10_1016_j_tibtech_2018_09_003
crossref_primary_10_1055_a_1401_2716
crossref_primary_10_1073_pnas_2218248120
crossref_primary_10_3390_jof8090929
crossref_primary_10_1021_acs_accounts_0c00810
crossref_primary_10_1002_cctc_201902044
crossref_primary_10_1002_anie_201802176
crossref_primary_10_1038_s41570_023_00564_0
Cites_doi 10.1016/j.abb.2013.12.005
10.1263/jbb.102.504
10.1021/bi900149f
10.1039/p19880001823
10.1093/nar/gkh381
10.1039/CT9242500811
10.1021/ja01192a078
10.1093/nar/16.22.10881
10.1073/pnas.181342398
10.1002/bit.10487
10.1074/jbc.M113.479303
10.1007/s00018-007-6362-1
10.1093/nar/gku340
10.1002/elps.200900140
10.1039/C3SC52911H
10.1093/bioinformatics/bti770
10.1271/bbb.65.2271
10.1073/pnas.1201469109
10.1021/ja052049g
10.1021/ol062233m
10.1021/ed067p801
10.1093/nar/gkn750
10.1002/prot.22570
10.1093/nar/gku316
ContentType Journal Article
DBID AAYXX
CITATION
7SR
8BQ
8FD
JG9
DOI 10.1039/C5RA06693J
DatabaseName CrossRef
Engineered Materials Abstracts
METADEX
Technology Research Database
Materials Research Database
DatabaseTitle CrossRef
Materials Research Database
Engineered Materials Abstracts
Technology Research Database
METADEX
DatabaseTitleList CrossRef
Materials Research Database
DeliveryMethod fulltext_linktorsrc
Discipline Chemistry
EISSN 2046-2069
EndPage 49995
ExternalDocumentID 10_1039_C5RA06693J
GroupedDBID -JG
0-7
0R~
53G
AAEMU
AAFWJ
AAHBH
AAIWI
AAJAE
AARTK
AAWGC
AAXHV
AAYXX
ABASK
ABEMK
ABGFH
ABPDG
ABXOH
ACGFS
ADBBV
ADMRA
AEFDR
AENEX
AESAV
AETIL
AFLYV
AFVBQ
AGEGJ
AGRSR
AGSTE
AHGCF
AKBGW
ALMA_UNASSIGNED_HOLDINGS
ANBJS
ANUXI
APEMP
ASKNT
AUDPV
AUNWK
BCNDV
BLAPV
BSQNT
C6K
CITATION
EBS
ECGLT
EE0
EF-
EJD
GROUPED_DOAJ
H13
HZ~
H~N
J3G
J3H
J3I
M~E
O9-
OK1
PGMZT
R7C
R7G
RAOCF
RCNCU
ROYLF
RPM
RPMJG
RRC
RSCEA
RVUXY
SLH
SMJ
YAE
ZCN
7SR
8BQ
8FD
JG9
ID FETCH-LOGICAL-c300t-2299bd1a40e0666cf3e52b963560512e66d31c1d447ee8e9634e15695089917a3
ISSN 2046-2069
IngestDate Fri Oct 25 21:56:18 EDT 2024
Fri Dec 06 04:55:27 EST 2024
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 62
Language English
LinkModel OpenURL
MergedId FETCHMERGED-LOGICAL-c300t-2299bd1a40e0666cf3e52b963560512e66d31c1d447ee8e9634e15695089917a3
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
OpenAccessLink https://pubs.rsc.org/en/content/articlepdf/2015/ra/c5ra06693j
PQID 1730049024
PQPubID 23500
PageCount 9
ParticipantIDs proquest_miscellaneous_1730049024
crossref_primary_10_1039_C5RA06693J
PublicationCentury 2000
PublicationDate 2015-01-01
PublicationDateYYYYMMDD 2015-01-01
PublicationDate_xml – month: 01
  year: 2015
  text: 2015-01-01
  day: 01
PublicationDecade 2010
PublicationTitle RSC advances
PublicationYear 2015
References Zhu (C5RA06693J-(cit5)/*[position()=1]) 2005; 127
Yuan (C5RA06693J-(cit13)/*[position()=1]) 2006; 102
Al Fahad (C5RA06693J-(cit7)/*[position()=1]) 2014; 5
Paul (C5RA06693J-(cit8)/*[position()=1]) 2003
Kiefer (C5RA06693J-(cit22)/*[position()=1]) 2009; 37
Abe (C5RA06693J-(cit15)/*[position()=1]) 2001; 65
Baker (C5RA06693J-(cit26)/*[position()=1]) 2001; 98
Corpet (C5RA06693J-(cit17)/*[position()=1]) 1988; 16
Huijbers (C5RA06693J-(cit2)/*[position()=1]) 2014; 544
Robert (C5RA06693J-(cit18)/*[position()=1]) 2014; 42
Arnall (C5RA06693J-(cit9)/*[position()=1]) 1924; 125
McCullough (C5RA06693J-(cit10)/*[position()=1]) 1990; 67
Montersino (C5RA06693J-(cit16)/*[position()=1]) 2013; 288
Biasini (C5RA06693J-(cit20)/*[position()=1]) 2014; 42
Guex (C5RA06693J-(cit23)/*[position()=1]) 2009; 30
Krieger (C5RA06693J-(cit24)/*[position()=1]) 2009; 77
Meyer (C5RA06693J-(cit3)/*[position()=1]) 2003; 81
Zhu (C5RA06693J-(cit6)/*[position()=1]) 2006; 8
Cram (C5RA06693J-(cit19)/*[position()=1]) 1948; 70
Dolinsky (C5RA06693J-(cit25)/*[position()=1]) 2004; 32
Arnold (C5RA06693J-(cit21)/*[position()=1]) 2006; 22
Iokhannes (C5RA06693J-(cit12)/*[position()=1]) 1995; 68
Ullrich (C5RA06693J-(cit1)/*[position()=1]) 2007; 64
Davison (C5RA06693J-(cit4)/*[position()=1]) 2012; 109
Raphael (C5RA06693J-(cit11)/*[position()=1]) 1988
McCulloch (C5RA06693J-(cit14)/*[position()=1]) 2009; 48
References_xml – volume: 544
  start-page: 2
  year: 2014
  ident: C5RA06693J-(cit2)/*[position()=1]
  publication-title: Arch. Biochem. Biophys.
  doi: 10.1016/j.abb.2013.12.005
  contributor:
    fullname: Huijbers
– volume: 102
  start-page: 504
  year: 2006
  ident: C5RA06693J-(cit13)/*[position()=1]
  publication-title: J. Biosci. Bioeng.
  doi: 10.1263/jbb.102.504
  contributor:
    fullname: Yuan
– volume: 48
  start-page: 4139
  year: 2009
  ident: C5RA06693J-(cit14)/*[position()=1]
  publication-title: Biochemistry
  doi: 10.1021/bi900149f
  contributor:
    fullname: McCulloch
– start-page: 1823
  year: 1988
  ident: C5RA06693J-(cit11)/*[position()=1]
  publication-title: J. Chem. Soc., Perkin Trans. 1
  doi: 10.1039/p19880001823
  contributor:
    fullname: Raphael
– volume: 32
  start-page: W665
  year: 2004
  ident: C5RA06693J-(cit25)/*[position()=1]
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkh381
  contributor:
    fullname: Dolinsky
– volume: 125
  start-page: 811
  year: 1924
  ident: C5RA06693J-(cit9)/*[position()=1]
  publication-title: J. Chem. Soc.
  doi: 10.1039/CT9242500811
  contributor:
    fullname: Arnall
– volume: 70
  start-page: 4244
  year: 1948
  ident: C5RA06693J-(cit19)/*[position()=1]
  publication-title: J. Am. Chem. Soc.
  doi: 10.1021/ja01192a078
  contributor:
    fullname: Cram
– volume: 16
  start-page: 10881
  year: 1988
  ident: C5RA06693J-(cit17)/*[position()=1]
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/16.22.10881
  contributor:
    fullname: Corpet
– volume: 98
  start-page: 10037
  year: 2001
  ident: C5RA06693J-(cit26)/*[position()=1]
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.181342398
  contributor:
    fullname: Baker
– volume: 81
  start-page: 518
  year: 2003
  ident: C5RA06693J-(cit3)/*[position()=1]
  publication-title: Biotechnol. Bioeng.
  doi: 10.1002/bit.10487
  contributor:
    fullname: Meyer
– volume: 288
  start-page: 26235
  year: 2013
  ident: C5RA06693J-(cit16)/*[position()=1]
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.M113.479303
  contributor:
    fullname: Montersino
– volume: 64
  start-page: 271
  year: 2007
  ident: C5RA06693J-(cit1)/*[position()=1]
  publication-title: Cell. Mol. Life Sci.
  doi: 10.1007/s00018-007-6362-1
  contributor:
    fullname: Ullrich
– volume: 42
  start-page: W252
  year: 2014
  ident: C5RA06693J-(cit20)/*[position()=1]
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gku340
  contributor:
    fullname: Biasini
– volume: 30
  start-page: S162
  year: 2009
  ident: C5RA06693J-(cit23)/*[position()=1]
  publication-title: Electrophoresis
  doi: 10.1002/elps.200900140
  contributor:
    fullname: Guex
– volume: 68
  start-page: 1159
  year: 1995
  ident: C5RA06693J-(cit12)/*[position()=1]
  publication-title: Russ. J. Appl. Chem.
  contributor:
    fullname: Iokhannes
– volume: 5
  start-page: 523
  year: 2014
  ident: C5RA06693J-(cit7)/*[position()=1]
  publication-title: Chem. Sci.
  doi: 10.1039/C3SC52911H
  contributor:
    fullname: Al Fahad
– volume: 22
  start-page: 195
  year: 2006
  ident: C5RA06693J-(cit21)/*[position()=1]
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bti770
  contributor:
    fullname: Arnold
– volume: 65
  start-page: 2271
  year: 2001
  ident: C5RA06693J-(cit15)/*[position()=1]
  publication-title: Biosci., Biotechnol., Biochem.
  doi: 10.1271/bbb.65.2271
  contributor:
    fullname: Abe
– volume: 109
  start-page: 7642
  year: 2012
  ident: C5RA06693J-(cit4)/*[position()=1]
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.1201469109
  contributor:
    fullname: Davison
– volume: 127
  start-page: 9342
  year: 2005
  ident: C5RA06693J-(cit5)/*[position()=1]
  publication-title: J. Am. Chem. Soc.
  doi: 10.1021/ja052049g
  contributor:
    fullname: Zhu
– volume: 8
  start-page: 5169
  year: 2006
  ident: C5RA06693J-(cit6)/*[position()=1]
  publication-title: Org. Lett.
  doi: 10.1021/ol062233m
  contributor:
    fullname: Zhu
– volume: 67
  start-page: 801
  year: 1990
  ident: C5RA06693J-(cit10)/*[position()=1]
  publication-title: J. Chem. Educ.
  doi: 10.1021/ed067p801
  contributor:
    fullname: McCullough
– start-page: 2877
  year: 2003
  ident: C5RA06693J-(cit8)/*[position()=1]
  publication-title: Synthesis
  contributor:
    fullname: Paul
– volume: 37
  start-page: D387
  year: 2009
  ident: C5RA06693J-(cit22)/*[position()=1]
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkn750
  contributor:
    fullname: Kiefer
– volume: 77
  start-page: 114
  issue: suppl. 9
  year: 2009
  ident: C5RA06693J-(cit24)/*[position()=1]
  publication-title: Proteins
  doi: 10.1002/prot.22570
  contributor:
    fullname: Krieger
– volume: 42
  start-page: W320
  year: 2014
  ident: C5RA06693J-(cit18)/*[position()=1]
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gku316
  contributor:
    fullname: Robert
SSID ssj0000651261
Score 2.2580523
Snippet Achieving regio-specific hydroxylation of aromatic compounds remains a major challenge in synthetic chemistry. By contrast, this transformation is readily...
SourceID proquest
crossref
SourceType Aggregation Database
StartPage 49987
SubjectTerms Aromatic compounds
Displays
Electronics
Enzymes
Hydroxylation
Selectivity
Tolerances
Transformations
Title Kinetic characterisation of the FAD dependent monooxygenase TropB and investigation of its biotransformation potential
URI https://search.proquest.com/docview/1730049024
Volume 5
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV07b9swECbcdGiXIn2hSR9g0G6CXEmkZGtUnRhGCndoHCCbIEpnxIAjGo5cNB36Q_prc5RISo4zJF0EmzIJSvf57jvyeEfIl3mG08uKAfomwnN57Ku_VOi5Acx94BxdDqHOO09_RJNzfnoRXvR6_zpRS5tK9PM_954r-R-pYhvKVZ2SfYRk7aDYgJ9RvnhFCeP1QTL-jhRRJVzN26zLlgEqQjlOjh1T5bZycFpS_r7B0dByObO1XH3TuZdsqo2mq9pLEAtZdTgt3ljJSkUW6TmZnN5nIxNGYMl5InQYT3K1WFutnyzdcXbZACq5vNJnquotIB0zkixbpE7kdXmjGzPnZOkew6J0pn3nrN9dp_DDzjpFrc4C9MRRek1hlj7c06b1cdiBndbUjXJF50wbZzDfmwKdO2bAYyqL6ij8mSCjitlpa-zMBv8dG2gjE-s9eRanbd8n5KlKsqjqMkz_tut3SN38oE7Hax_CZL9l8de2-zbf2Tb3NYeZ7ZMX2vmgSYOkl6QH5SvybGRq_r0mvzSi6F1EUTmniCiKiKIWUXQLUbRGFEVE0S1Eqa6IKLqDKGoR9Yacj09mo4mrK3O4OfO8yg2QxIjCz7gHyv_N5wzCQMQq1yEq-QCiqGB-7hecDwCGgDc4-GGkKg6jPzLI2FuyV8oS3hEqCg9_C8MBy0OeR2I4VJwzqxMBejmHA_LZvL901SRgSXeFdECOzKtN8ZWpTa-sBLm5Tn1VkIHHSEUPHzTSe_K8Re8HsletN_AReWclPtUAuAW5HoPr
link.rule.ids 314,780,784,27924,27925
linkProvider ISSN International Centre
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Kinetic+characterisation+of+the+FAD+dependent+monooxygenase+TropB+and+investigation+of+its+biotransformation+potential&rft.jtitle=RSC+advances&rft.au=Abood%2C+Amira&rft.au=Al-Fahad%2C+Ahmed&rft.au=Scott%2C+Alan&rft.au=Hosny%2C+Alaa+El-Dein+M.+S.&rft.date=2015-01-01&rft.issn=2046-2069&rft.eissn=2046-2069&rft.volume=5&rft.issue=62&rft.spage=49987&rft.epage=49995&rft_id=info:doi/10.1039%2FC5RA06693J&rft.externalDBID=n%2Fa&rft.externalDocID=10_1039_C5RA06693J
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2046-2069&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2046-2069&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2046-2069&client=summon