The perils of naïve use of open-source data: A comment on “Spatiotemporal distribution of sudden oak death in the US and Europe”
•Kang et al. (2024) present a spatiotemporal analysis of the Phytophthora ramorum epidemic in the United States and Europe over the past decades. However, the analysis and conclusions are flawed because of a lack of understanding of the pathosystems analyzed which prompted the authors to select impr...
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Published in | Agricultural and forest meteorology Vol. 368; p. 110553 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
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Elsevier B.V
01.06.2025
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Abstract | •Kang et al. (2024) present a spatiotemporal analysis of the Phytophthora ramorum epidemic in the United States and Europe over the past decades. However, the analysis and conclusions are flawed because of a lack of understanding of the pathosystems analyzed which prompted the authors to select improper analysis methods. T-he paper also contains technical errors throughout, and the referencing is inadequate.•The SODmap open-source data analyzed does not include year-round sampling. Sampling is primarily conducted in the spring, during the rainy season in California which makes the data unbalanced and inappropriate for examination of seasonality without transformation.•Differences in characteristics between the locations where infection clusters occur, irrigated nurseries and gardens, versus natural forests subject to only ambient environmental conditions, were not considered when analyzing relationships between moisture conditions and pathogen spread.•Additional disease and pathogen detection records exist for P. ramorum in the United States and the United Kingdom, but they were not included in the analysis.•To obtain meaningful results when using of publicly available data, there are many challenges that need to be considered when conducting spatiotemporal analyses for a plant pathogen that occurs in forests, nurseries and gardens.
Kang et al. (2024) present a spatiotemporal analysis of Phytophthora ramorum outbreaks from 2005 to 2021 in the United States and Europe. However, the analysis and conclusions are flawed because of a lack of understanding of the pathosystems analyzed which led the authors to select improper methods for their analysis. The open-source data analyzed does not include sampling over all seasons of the year. Sampling is primarily conducted in the spring which makes the data unbalanced and inappropriate for examination of seasonality without transformation. Differences in characteristics, and significant driving factors (e.g., relative humidity) between the locations where infection clusters occur, irrigated nurseries with complex sources of inoculum and modified environments versus natural forests subject to only ambient environmental conditions, were not considered when analyzing relationships between moisture conditions and pathogen spread. Additional occurrence records exist for P. ramorum in the United States and the United Kingdom, but they were not included in the analysis. Clear descriptive language and proper study design are required to understand how environmental conditions influence P. ramorum establishment and spread so they can inform forest management and regulations to protect the resources at risk. An understanding of the temporal and spatial dynamics of Sudden Oak Death, Sudden Larch Death, Ramorum Blight and other diseases caused by P. ramorum is critical to serve as the basis for management strategies to limit losses and pathogen spread. The use of publicly available data presents specific challenges that need to be considered in spatiotemporal analyses to obtain meaningful results. |
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AbstractList | •Kang et al. (2024) present a spatiotemporal analysis of the Phytophthora ramorum epidemic in the United States and Europe over the past decades. However, the analysis and conclusions are flawed because of a lack of understanding of the pathosystems analyzed which prompted the authors to select improper analysis methods. T-he paper also contains technical errors throughout, and the referencing is inadequate.•The SODmap open-source data analyzed does not include year-round sampling. Sampling is primarily conducted in the spring, during the rainy season in California which makes the data unbalanced and inappropriate for examination of seasonality without transformation.•Differences in characteristics between the locations where infection clusters occur, irrigated nurseries and gardens, versus natural forests subject to only ambient environmental conditions, were not considered when analyzing relationships between moisture conditions and pathogen spread.•Additional disease and pathogen detection records exist for P. ramorum in the United States and the United Kingdom, but they were not included in the analysis.•To obtain meaningful results when using of publicly available data, there are many challenges that need to be considered when conducting spatiotemporal analyses for a plant pathogen that occurs in forests, nurseries and gardens.
Kang et al. (2024) present a spatiotemporal analysis of Phytophthora ramorum outbreaks from 2005 to 2021 in the United States and Europe. However, the analysis and conclusions are flawed because of a lack of understanding of the pathosystems analyzed which led the authors to select improper methods for their analysis. The open-source data analyzed does not include sampling over all seasons of the year. Sampling is primarily conducted in the spring which makes the data unbalanced and inappropriate for examination of seasonality without transformation. Differences in characteristics, and significant driving factors (e.g., relative humidity) between the locations where infection clusters occur, irrigated nurseries with complex sources of inoculum and modified environments versus natural forests subject to only ambient environmental conditions, were not considered when analyzing relationships between moisture conditions and pathogen spread. Additional occurrence records exist for P. ramorum in the United States and the United Kingdom, but they were not included in the analysis. Clear descriptive language and proper study design are required to understand how environmental conditions influence P. ramorum establishment and spread so they can inform forest management and regulations to protect the resources at risk. An understanding of the temporal and spatial dynamics of Sudden Oak Death, Sudden Larch Death, Ramorum Blight and other diseases caused by P. ramorum is critical to serve as the basis for management strategies to limit losses and pathogen spread. The use of publicly available data presents specific challenges that need to be considered in spatiotemporal analyses to obtain meaningful results. Kang et al. (2024) present a spatiotemporal analysis of Phytophthora ramorum outbreaks from 2005 to 2021 in the United States and Europe. However, the analysis and conclusions are flawed because of a lack of understanding of the pathosystems analyzed which led the authors to select improper methods for their analysis. The open-source data analyzed does not include sampling over all seasons of the year. Sampling is primarily conducted in the spring which makes the data unbalanced and inappropriate for examination of seasonality without transformation. Differences in characteristics, and significant driving factors (e.g., relative humidity) between the locations where infection clusters occur, irrigated nurseries with complex sources of inoculum and modified environments versus natural forests subject to only ambient environmental conditions, were not considered when analyzing relationships between moisture conditions and pathogen spread. Additional occurrence records exist for P. ramorum in the United States and the United Kingdom, but they were not included in the analysis. Clear descriptive language and proper study design are required to understand how environmental conditions influence P. ramorum establishment and spread so they can inform forest management and regulations to protect the resources at risk. An understanding of the temporal and spatial dynamics of Sudden Oak Death, Sudden Larch Death, Ramorum Blight and other diseases caused by P. ramorum is critical to serve as the basis for management strategies to limit losses and pathogen spread. The use of publicly available data presents specific challenges that need to be considered in spatiotemporal analyses to obtain meaningful results. |
ArticleNumber | 110553 |
Author | Frankel, Susan J. Grünwald, Niklaus J. Venette, Robert C. Jones, Chris Garbelotto, Matteo |
Author_xml | – sequence: 1 givenname: Susan J. orcidid: 0000-0002-7352-0619 surname: Frankel fullname: Frankel, Susan J. email: susan.frankel@usda.gov organization: USDA Forest Service, Pacific Southwest Research Station, 1323 Club Dr, Vallejo, CA 94592 USA – sequence: 2 givenname: Matteo surname: Garbelotto fullname: Garbelotto, Matteo email: matteog@berkeley.edu organization: Department of Environmental Science, Policy and Management, University of California, 54 Mulford Hall, Berkeley, CA 94720, USA – sequence: 3 givenname: Chris orcidid: 0000-0002-0229-2970 surname: Jones fullname: Jones, Chris email: cmjone25@ncsu.edu organization: Center for Geospatial Analytics, College of Natural Resources, Jordan Hall 5120, Campus Box 7106, North Carolina State University, Raleigh, NC 27695 USA – sequence: 4 givenname: Niklaus J. orcidid: 0000-0003-1656-7602 surname: Grünwald fullname: Grünwald, Niklaus J. email: nik.grunwald@usda.gov organization: Horticultural Crops Disease and Pest Management Research Unit, United States Department of Agriculture (USDA) Agricultural Research Service, Corvallis, OR 97330, USA – sequence: 5 givenname: Robert C. orcidid: 0000-0002-3181-8214 surname: Venette fullname: Venette, Robert C. email: robert.c.venette@usda.gov organization: USDA Forest Service, Northern Research Station, 1561 Lindig Ave. St., St. Paul, MN USA 55108 USA |
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Cites_doi | 10.1094/PHYTO-99-9-1045 10.1016/S0953-7562(08)61986-3 10.1111/ppa.13297 10.1111/j.1365-3059.2009.02209.x 10.3390/f8080293 10.1111/jbi.14354 10.1371/journal.pone.0098195 10.1371/journal.ppat.1000583 10.1094/PDIS-03-20-0485-RE 10.1094/PHYTO-95-0587 10.1094/PHYTO-99-7-0792 10.3390/f12121617 10.1094/PHP-RS-16-0050 10.3390/pathogens11020250 10.1094/PHYTO-03-10-0064 10.1128/EC.00195-12 10.1016/j.agrformet.2024.109891 10.1094/PDIS-02-22-0294-FE 10.1111/j.1365-2745.2008.01376.x 10.1094/PDIS-03-20-0619-RE 10.1094/PHYTO.2004.94.10.1075 10.1890/140299 |
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SubjectTerms | blight death forest management forests inoculum Larix meteorology pathogens Phytophthora ramorum Publicly available data relative humidity risk spring sudden oak death United Kingdom |
Title | The perils of naïve use of open-source data: A comment on “Spatiotemporal distribution of sudden oak death in the US and Europe” |
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