Evolutionary History of DMSP Lyase-Like Genes in Animals and Their Possible Involvement in Evolution of the Scleractinian Coral Genus, Acropora
Dimethlysulfoniopropionate (DMSP) lyase is an enzyme that mediates cleavage of DMSP into dimethyl sulfide (DMS) and acrylate. DMS is an aerosol substance that may affect cloud formation, solar radiation and ocean temperatures. DMSP lyases in marine organisms, such as marine bacteria, release DMS, wh...
Saved in:
Published in | Frontiers in Marine Science Vol. 9 |
---|---|
Main Authors | , |
Format | Journal Article |
Language | English |
Published |
Frontiers Media S.A
13.06.2022
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Dimethlysulfoniopropionate (DMSP) lyase is an enzyme that mediates cleavage of DMSP into dimethyl sulfide (DMS) and acrylate. DMS is an aerosol substance that may affect cloud formation, solar radiation and ocean temperatures. DMSP lyases in marine organisms, such as marine bacteria, release DMS, which might contribute to atmosphere-ocean feedback. Although DMSP lyases were first identified in marine bacteria, eukaryotic DMSP lyases or genes similar to DMSP lyase,
DMSP lyase-like
(
DL-L
) genes have been found not only in coccolithophores (
Emiliania huxleyi
) and symbiotic algae of the Family Symbiodiniaceae, but also in animals, including scleractinian corals (Cnidaria: Anthozoa: Hexacorallia). Comparative genomic analysis showed that gene expansion events of
DL-L
genes have occurred specifically in the scleractinian genus,
Acropora
. In the present study, we performed molecular identification of
DL-L
genes in
Acropora digitifera
. Thirteen full-length Open Reading Frames were isolated, confirming that these duplicated
DL-L
genes are likely expressed. A comprehensive survey of available transcriptomic databases revealed that
DL-L
genes have been identified not only in scleractinians (Hexacorallia), but also Octocorallia (Anthozoa) and even in a jellyfish (Cnidaria: Hydrozoa). Molecular phylogenetic analyses showed that although some sequences from cnidarian transcriptomic databases apparently originated with their symbiotic algae, cnidarian sequences from Anthozoa and Hydrozoa clustered together, indicating that these evolved from a gene in the last common ancestor of Cnidaria, dating to the Precambrian. Interestingly, cnidarian species possessing
DL-L
genes apparently occur only in coral reefs or shallow, warmer environments, suggesting that these genes may be essential for animals to survive in such environments.
Acropora
-specific duplicated
DL-L
genes, which originated during the past warm geological periods, may enable them to adapt to environmental changes. |
---|---|
AbstractList | Dimethlysulfoniopropionate (DMSP) lyase is an enzyme that mediates cleavage of DMSP into dimethyl sulfide (DMS) and acrylate. DMS is an aerosol substance that may affect cloud formation, solar radiation and ocean temperatures. DMSP lyases in marine organisms, such as marine bacteria, release DMS, which might contribute to atmosphere-ocean feedback. Although DMSP lyases were first identified in marine bacteria, eukaryotic DMSP lyases or genes similar to DMSP lyase, DMSP lyase-like (DL-L) genes have been found not only in coccolithophores (Emiliania huxleyi) and symbiotic algae of the Family Symbiodiniaceae, but also in animals, including scleractinian corals (Cnidaria: Anthozoa: Hexacorallia). Comparative genomic analysis showed that gene expansion events of DL-L genes have occurred specifically in the scleractinian genus, Acropora. In the present study, we performed molecular identification of DL-L genes in Acropora digitifera. Thirteen full-length Open Reading Frames were isolated, confirming that these duplicated DL-L genes are likely expressed. A comprehensive survey of available transcriptomic databases revealed that DL-L genes have been identified not only in scleractinians (Hexacorallia), but also Octocorallia (Anthozoa) and even in a jellyfish (Cnidaria: Hydrozoa). Molecular phylogenetic analyses showed that although some sequences from cnidarian transcriptomic databases apparently originated with their symbiotic algae, cnidarian sequences from Anthozoa and Hydrozoa clustered together, indicating that these evolved from a gene in the last common ancestor of Cnidaria, dating to the Precambrian. Interestingly, cnidarian species possessing DL-L genes apparently occur only in coral reefs or shallow, warmer environments, suggesting that these genes may be essential for animals to survive in such environments. Acropora-specific duplicated DL-L genes, which originated during the past warm geological periods, may enable them to adapt to environmental changes. Dimethlysulfoniopropionate (DMSP) lyase is an enzyme that mediates cleavage of DMSP into dimethyl sulfide (DMS) and acrylate. DMS is an aerosol substance that may affect cloud formation, solar radiation and ocean temperatures. DMSP lyases in marine organisms, such as marine bacteria, release DMS, which might contribute to atmosphere-ocean feedback. Although DMSP lyases were first identified in marine bacteria, eukaryotic DMSP lyases or genes similar to DMSP lyase, DMSP lyase-like ( DL-L ) genes have been found not only in coccolithophores ( Emiliania huxleyi ) and symbiotic algae of the Family Symbiodiniaceae, but also in animals, including scleractinian corals (Cnidaria: Anthozoa: Hexacorallia). Comparative genomic analysis showed that gene expansion events of DL-L genes have occurred specifically in the scleractinian genus, Acropora . In the present study, we performed molecular identification of DL-L genes in Acropora digitifera . Thirteen full-length Open Reading Frames were isolated, confirming that these duplicated DL-L genes are likely expressed. A comprehensive survey of available transcriptomic databases revealed that DL-L genes have been identified not only in scleractinians (Hexacorallia), but also Octocorallia (Anthozoa) and even in a jellyfish (Cnidaria: Hydrozoa). Molecular phylogenetic analyses showed that although some sequences from cnidarian transcriptomic databases apparently originated with their symbiotic algae, cnidarian sequences from Anthozoa and Hydrozoa clustered together, indicating that these evolved from a gene in the last common ancestor of Cnidaria, dating to the Precambrian. Interestingly, cnidarian species possessing DL-L genes apparently occur only in coral reefs or shallow, warmer environments, suggesting that these genes may be essential for animals to survive in such environments. Acropora -specific duplicated DL-L genes, which originated during the past warm geological periods, may enable them to adapt to environmental changes. |
Author | Chiu, Yi-Ling Shinzato, Chuya |
Author_xml | – sequence: 1 givenname: Yi-Ling surname: Chiu fullname: Chiu, Yi-Ling – sequence: 2 givenname: Chuya surname: Shinzato fullname: Shinzato, Chuya |
BookMark | eNp1kdFqFDEUhoNUsNY-gHd5AGfNJDOT5HJZa7uwYqH1OpzJnNjU2aQkaWGfoq9spqsiglf_4XD-j_PzvyUnIQYk5H3LVkIo_dHtIeUVZ5yvlNJqGF6RU8710EjZ9Sd_zW_Iec73jLFWdKzv9Cl5vniK82PxMUA60CufS6waHf305eaa7g6Qsdn5H0gvMWCmPtB18HuYM4Uw0ds79Ilex5z9OCPdhgp7wj2Gslz-QS-8cof0xs6YwBYfPAS6iQnmhfuYP9C1TfGhLt6R167S8fyXnpFvny9uN1fN7uvldrPeNZarrjTTpFQPrR1kr6RwtmPAlHQ967qeCS57PaKWdnJqcv3oJJ-4lgKYnYRuuUJxRrZH7hTh3jykmikdTARvXhYxfTeQiq8PGxzEKGAYmBtVh4LpUYytEoJJsOB4W1nyyKoZck7ojPUFluAlgZ9Ny8xSk3mpySw1mWNN1dn-4_z9yf89PwEWoppa |
CitedBy_id | crossref_primary_10_1093_gbe_evae014 crossref_primary_10_1016_j_scitotenv_2023_167864 crossref_primary_10_1038_s43705_023_00280_2 |
Cites_doi | 10.3354/meps243001 10.1016/j.envexpbot.2012.01.006 10.1038/353834a0 10.1038/nature12677 10.1016/S0304-4203(09)90030-5 10.1006/ecss.2002.1021 10.3354/meps175215 10.1093/gbe/evaa240 10.1093/bioinformatics/btp616 10.1126/sciadv.aau5716 10.1071/PP9940037 10.2307/1538903 10.1126/science.271.5249.640 10.2307/1297526 10.1007/s00427-005-0468-y 10.1038/nmicrobiol.2017.9 10.1093/nar/gkg563 10.1093/bioinformatics/btu033 10.1016/S0012-8252(02)00104-6 10.1126/science.aab1586 10.7554/eLife.64045 10.1104/pp.111.185025 10.1093/bioinformatics/bty191 10.1093/molbev/mst010 10.3389/fmicb.2019.02343 10.1016/j.cub.2018.07.008 10.1098/rspb.2005.3307 10.1093/bioinformatics/btp348 10.1093/nar/gks042 10.1038/nature10580 10.1093/oxfordjournals.molbev.a003916 10.1016/j.cub.2016.08.011 10.1126/science.1206375 10.1128/AEM.70.6.3383-3391.2004 10.1073/pnas.0401670101 10.1002/9781444325508.ch4 10.1371/journal.pone.0001121 10.1017/S1477201905001689 10.1071/EN06011 10.1007/978-1-4613-0377-0_13 10.1016/j.tree.2009.11.001 10.5479/si.01960768.38.139 10.1371/journal.pone.0094795 10.3800/pbr.14.206 10.1007/978-3-319-31305-4_4 10.1186/s12864-020-07113-9 10.1021/bk-1989-0393.ch011 10.1186/1471-2148-11-316 10.1093/gbe/evz077 10.1038/s41564-021-00971-3 10.1007/s10533-007-9091-5 10.1186/s12864-017-3959-0 10.5194/acp-10-7545-2010 10.3354/meps097011 10.1093/sysbio/syaa103 10.4319/lo.2003.48.1.0217 10.1038/nbt.3519 10.1038/s41564-018-0119-5 10.3354/meps123235 10.1130/0091-7613(1977)5<400:GSOLQC>2.0.CO;2 10.1016/j.ympev.2011.10.008 10.1038/nature00851 10.4319/lo.1996.41.6.1151 10.3354/ame014001 10.1186/s12862-018-1142-0 10.1128/AEM.02567-08 10.1007/s003380050222 10.1146/annurev.physiol.68.040104.110001 10.4319/lo.2014.59.3.0758 10.1038/43160 10.1038/s41598-020-66290-5 10.14806/ej.17.1.200 10.1104/pp.117.1.273 10.1016/j.tim.2015.03.008 10.1098/rspb.2014.1202 10.2216/i0031-8884-40-6-503.1 10.1073/pnas.1722151115 10.3389/fmicb.2011.00172 10.1007/978-3-319-31305-4_32 10.1038/nature10249 10.1093/gbe/evab270 10.1128/AEM.68.12.5804-5815.2002 10.1126/science.1133680 10.1016/0022-0981(95)00207-3 10.1038/s41564-021-00981-1 10.1104/pp.105.1.103 10.1007/s002279900235 10.1093/molbev/msaa216 10.1126/sciadv.1601122 10.1071/MF04114 10.1128/MMBR.05014-11 10.1093/nar/gkf436 10.1038/43168 |
ContentType | Journal Article |
DBID | AAYXX CITATION DOA |
DOI | 10.3389/fmars.2022.889866 |
DatabaseName | CrossRef DOAJ: Directory of Open Access Journals |
DatabaseTitle | CrossRef |
DatabaseTitleList | CrossRef |
Database_xml | – sequence: 1 dbid: DOA name: DOAJ Open Access Full Text url: https://www.doaj.org/ sourceTypes: Open Website |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Oceanography |
EISSN | 2296-7745 |
ExternalDocumentID | oai_doaj_org_article_e63b3a660fb84e309b3b183307acaf21 10_3389_fmars_2022_889866 |
GroupedDBID | 5VS 88I 8FE 8FH 9T4 AAFWJ AAYXX ABUWG ACGFS ACXDI ADBBV AEUYN AFKRA AFPKN ALMA_UNASSIGNED_HOLDINGS AZQEC BBNVY BCNDV BENPR BHPHI BKSAR BPHCQ CCPQU CITATION DWQXO FRP GNUQQ GROUPED_DOAJ HCIFZ KQ8 LK8 M2P M7P M~E OK1 PCBAR PHGZM PHGZT PIMPY PQQKQ PROAC PQGLB PUEGO |
ID | FETCH-LOGICAL-c284t-dd885a1c675873fc40a087f50445032759be97cdf8df5bf72d2973a0cd39128e3 |
IEDL.DBID | DOA |
ISSN | 2296-7745 |
IngestDate | Wed Aug 27 01:25:18 EDT 2025 Tue Jul 01 02:47:45 EDT 2025 Thu Apr 24 22:56:52 EDT 2025 |
IsDoiOpenAccess | true |
IsOpenAccess | true |
IsPeerReviewed | true |
IsScholarly | true |
Language | English |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c284t-dd885a1c675873fc40a087f50445032759be97cdf8df5bf72d2973a0cd39128e3 |
OpenAccessLink | https://doaj.org/article/e63b3a660fb84e309b3b183307acaf21 |
ParticipantIDs | doaj_primary_oai_doaj_org_article_e63b3a660fb84e309b3b183307acaf21 crossref_citationtrail_10_3389_fmars_2022_889866 crossref_primary_10_3389_fmars_2022_889866 |
ProviderPackageCode | CITATION AAYXX |
PublicationCentury | 2000 |
PublicationDate | 2022-06-13 |
PublicationDateYYYYMMDD | 2022-06-13 |
PublicationDate_xml | – month: 06 year: 2022 text: 2022-06-13 day: 13 |
PublicationDecade | 2020 |
PublicationTitle | Frontiers in Marine Science |
PublicationYear | 2022 |
Publisher | Frontiers Media S.A |
Publisher_xml | – name: Frontiers Media S.A |
References | Kayal (B36) 2018; 18 Knowlton (B41) 2010 Rohwer (B68) 2002; 243 Muscatine (B55) 1977; 27 Wallace (B92) 1999 Stamatakis (B76) 2014; 30 Niki (B56) 2000; 136 Kettles (B38) 2014; 9 Budd (B12) 2000; 19 Peterson (B60) 2004; 101 Reisch (B66) 2011; 2 McCarthy (B51) 2012; 40 Aguilar (B1) 2017; 18 Goreau (B27) 1959; 117 Wallace (B93) 2006; 273 Bray (B8) 2016; 34 Chiu (B16) 2020; 21 Husband (B32) 2012; 79 Strom (B83) 2003; 48 Ying (B98) 2019; 11 Martin (B50) 2011; 17 Quinn (B62) 2011; 480 Swan (B85) 2012 Gage (B25) 1997; 387 Kitahara (B40) 2016 Keller (B37) 1989 Yasuoka (B97) 2016; 26 Hislop (B31) 2005; 215 Raina (B64) 2013; 502 Hanson (B29) 1994; 105 Lyon (B48) 2011; 157 Steinke (B80) 1996; 201 Erwin (B23) 2011; 334 Karsten (B33) 1996 Miller (B53) 2004; 70 Shemi (B72) 2021; 6 Lesser (B44) 2006; 68 Paasche (B57) 2001; 40 Teng (B86) 2021; 6 Shinzato (B74) 2011; 476 Ainsworth (B2) 2010; 25 Raina (B65) 2009; 75 Schuster (B71) 2002 Park (B59) 2012; 62 Romano (B70) 1996; 271 Curson (B19) 2017; 2 Thierstein (B87) 1977; 5 Katoh (B34) 2002; 30 Ayers (B5) 1991; 353 Gasteiger (B26) 2003; 31 Yoch (B99) 2002; 68 Barak-Gavish (B6) 2018; 4 Capella-Gutiérrez (B13) 2009; 25 Kocsis (B42) 1998; 117 LaJeunesse (B43) 2018; 28 Frankowiak (B24) 2016; 2 Qin (B61) 2019; 10 Collins (B18) 2009; 38 Yoshioka (B100) 2021; 13 Van Boekel (B89) 1993; 97 Li (B47) 2021; 10 Maor-Landaw (B49) 2016 Robinson (B67) 2010; 26 Cartwright (B15) 2007; 2 Wolfe (B95) 1997; 387 Broadbent (B11) 2002; 55 Broadbent (B9) 2004; 55 Curson (B20) 2018; 3 Stefels (B79) 2007; 83 Stefels (B78) 1995; 123 Woodhouse (B96) 2010; 10 Kirst (B39) 1991; 35 Shinzato (B75) 2021; 13 Alcolombri (B3) 2015; 348 Broadbent (B10) 2006; 3 Vallina (B88) 2007; 315 Guibert (B28) 2020; 10 Shinzato (B73) 2021; 38 Stanley (B77) 2003; 60 Liu (B46) 2014; 281 Steinke (B81) 1998; 175 Rädecker (B63) 2015; 23 Hill (B30) 1998; 14 Paquet (B58) 1994; 21 McFadden (B52) 2021; 70 van Oppen (B90) 2001; 18 Katoh (B35) 2013; 30 Wolfe (B94) 1996; 41 Muscatine (B54) 1990; 25 Cleves (B17) 2018; 115 Li (B45) 2018; 34 Veron (B91) 2000 Carbone (B14) 1993; 29 Sunda (B84) 2002; 418 Araya (B4) 2018; 14 Baron-Szabo (B7) 2006; 4 Deschaseaux (B22) 2014; 59 Stolarski (B82) 2011; 11 Davy (B21) 2012; 76 Romano (B69) 2000; 67 |
References_xml | – volume: 243 start-page: 1 year: 2002 ident: B68 article-title: Diversity and Distribution of Coral-Associated Bacteria publication-title: Mar. Ecol. Prog. Ser. doi: 10.3354/meps243001 – volume: 79 start-page: 44 year: 2012 ident: B32 article-title: Oxidation of Dimethylsulfoniopropionate (DMSP) in Response to Oxidative Stress in Spartina Alterniflora and Protection of a Non-DMSP Producing Grass by Exogenous DMSP+ Acrylate publication-title: Environ. Exp. Bot. doi: 10.1016/j.envexpbot.2012.01.006 – volume: 353 start-page: 834 year: 1991 ident: B5 article-title: ). Seasonal Relationship Between Cloud Condensation Nuclei and Aerosol Methanesulphonate in Marine Air publication-title: Nature doi: 10.1038/353834a0 – volume: 502 start-page: 677 year: 2013 ident: B64 article-title: DMSP Biosynthesis by an Animal and its Role in Coral Thermal Stress Response publication-title: Nature doi: 10.1038/nature12677 – volume: 35 start-page: 381 year: 1991 ident: B39 article-title: Dimethylsulfoniopropionate (DMSP) in Icealgae and its Possible Biological Role publication-title: Mar. Chem. doi: 10.1016/S0304-4203(09)90030-5 – volume: 55 start-page: 547 year: 2002 ident: B11 article-title: DMSP in Corals and Benthic Algae From the Great Barrier Reef publication-title: Estuar. Coast. Shelf. Sci. doi: 10.1006/ecss.2002.1021 – volume: 175 start-page: 215 year: 1998 ident: B81 article-title: Partial Characterisation of Dimethylsulfoniopropionate (DMSP) Lyase Isozymes in 6 Strains of Emiliania Huxleyi publication-title: Mar. Ecol. Prog. Ser. doi: 10.3354/meps175215 – volume: 13 year: 2021 ident: B100 article-title: Whole-Genome Transcriptome Analyses of Native Symbionts Reveal Host Coral Genomic Novelties for Establishing Coral-Algae Symbioses publication-title: Genome Biol. Evol. doi: 10.1093/gbe/evaa240 – volume: 26 start-page: 139 year: 2010 ident: B67 article-title: Edger: A Bioconductor Package for Differential Expression Analysis of Digital Gene Expression Data publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp616 – volume: 4 year: 2018 ident: B6 article-title: Bacterial Virulence Against an Oceanic Bloom-Forming Phytoplankter is Mediated by Algal DMSP publication-title: Sci. Adv. doi: 10.1126/sciadv.aau5716 – volume: 21 start-page: 37 year: 1994 ident: B58 article-title: Accumulation of the Compatible Solute 3-Dimethylsulfoniopropionate in Sugarcane and its Relatives, But Not Other Gramineous Crops publication-title: Funct. Plant Biol. doi: 10.1071/PP9940037 – volume: 117 start-page: 239 year: 1959 ident: B27 article-title: The Physiology of Skeleton Formation in Corals. II. Calcium Deposition by Hermatypic Corals Under Various Conditions in the Reef publication-title: Biol. Bull. doi: 10.2307/1538903 – volume: 271 start-page: 640 year: 1996 ident: B70 article-title: Evolution of Scleractinian Corals Inferred From Molecular Systematics publication-title: Science doi: 10.1126/science.271.5249.640 – volume: 27 start-page: 454 year: 1977 ident: B55 article-title: Reef Corals: Mutualistic Symbioses Adapted to Nutrient-Poor Environments publication-title: Bioscience doi: 10.2307/1297526 – volume: 215 start-page: 268 year: 2005 ident: B31 article-title: Tandem Organization of Independently Duplicated Homeobox Genes in the Basal Cnidarian Acropora Millepora publication-title: Dev. Genes Evol. doi: 10.1007/s00427-005-0468-y – volume: 2 start-page: 17009 year: 2017 ident: B19 article-title: Dimethylsulfoniopropionate Biosynthesis in Marine Bacteria and Identification of the Key Gene in This Process publication-title: Nat. Microbiol. doi: 10.1038/nmicrobiol.2017.9 – volume: 31 start-page: 3784 year: 2003 ident: B26 article-title: ExPASy: The Proteomics Server for In-Depth Protein Knowledge and Analysis publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkg563 – start-page: 1 volume-title: Taxonomy of Oligocene to Early Miocene Scleractinian Corals-From Iran, Egypt, Turkey and Greece year: 2002 ident: B71 – volume: 30 start-page: 1312 year: 2014 ident: B76 article-title: RAxML Version 8: A Tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu033 – volume: 60 start-page: 195 year: 2003 ident: B77 article-title: The Evolution of Modern Corals and Their Early History publication-title: Earth Sci. Rev. doi: 10.1016/S0012-8252(02)00104-6 – volume: 348 start-page: 1466 year: 2015 ident: B3 article-title: Identification of the Algal Dimethyl Sulfide-Releasing Enzyme: A Missing Link in the Marine Sulfur Cycle publication-title: Science doi: 10.1126/science.aab1586 – volume: 10 year: 2021 ident: B47 article-title: A Novel ATP Dependent Dimethylsulfoniopropionate Lyase in Bacteria That Releases Dimethyl Sulfide and Acryloyl-CoA publication-title: eLife doi: 10.7554/eLife.64045 – volume: 157 start-page: 1926 year: 2011 ident: B48 article-title: Proteomic Analysis of a Sea-Ice Diatom: Salinity Acclimation Provides New Insight Into the Dimethylsulfoniopropionate Production Pathway publication-title: Plant Physiol. doi: 10.1104/pp.111.185025 – volume: 34 start-page: 3094 year: 2018 ident: B45 article-title: Minimap2: Pairwise Alignment for Nucleotide Sequences publication-title: Bioinformatics doi: 10.1093/bioinformatics/bty191 – volume: 30 start-page: 772 year: 2013 ident: B35 article-title: MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/mst010 – volume: 10 year: 2019 ident: B61 article-title: Diversity of Symbiodiniaceae in 15 Coral Species From the Southern South China Sea: Potential Relationship With Coral Thermal Adaptability publication-title: Front. Microbiol. doi: 10.3389/fmicb.2019.02343 – volume: 28 start-page: 2570 year: 2018 ident: B43 article-title: Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts publication-title: Curr. Biol. doi: 10.1016/j.cub.2018.07.008 – volume: 273 start-page: 975 year: 2006 ident: B93 article-title: Diverse Staghorn Corals (Acropora) in High-Latitude Eocene Assemblages: Implications for the Evolution of Modern Diversity Patterns of Reef Corals publication-title: Proc. Biol. Sci. doi: 10.1098/rspb.2005.3307 – volume: 25 start-page: 1972 year: 2009 ident: B13 article-title: trimAl: A Tool for Automated Alignment Trimming in Large-Scale Phylogenetic Analyses publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp348 – volume: 40 start-page: 4288 year: 2012 ident: B51 article-title: Differential Expression Analysis of Multifactor RNA-Seq Experiments With Respect to Biological Variation publication-title: Nucleic Acids Res. doi: 10.1093/nar/gks042 – volume: 480 start-page: 51 year: 2011 ident: B62 article-title: The Case Against Climate Regulation via Oceanic Phytoplankton Sulphur Emissions publication-title: Nature doi: 10.1038/nature10580 – volume: 29 start-page: 213 year: 1993 ident: B14 article-title: Facies Analysis and Biostratigraphy of the Auradu Limestone Formation in the Berbera-Sheikh Area, Northwestern Somalia publication-title: Geol. Rom. – volume: 18 start-page: 1315 year: 2001 ident: B90 article-title: The Evolutionary History of the Coral Genus Acropora (Scleractinia, Cnidaria) Based on a Mitochondrial and a Nuclear Marker: Reticulation, Incomplete Lineage Sorting, or Morphological Convergence publication-title: Mol. Biol. Evol. doi: 10.1093/oxfordjournals.molbev.a003916 – volume: 26 start-page: 2885 year: 2016 ident: B97 article-title: The Mesoderm-Forming Gene Brachyury Regulates Ectoderm-Endoderm Demarcation in the Coral Acropora Digitifera publication-title: Curr. Biol. doi: 10.1016/j.cub.2016.08.011 – volume: 334 start-page: 1091 year: 2011 ident: B23 article-title: The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals publication-title: Science doi: 10.1126/science.1206375 – volume: 70 start-page: 3383 year: 2004 ident: B53 article-title: Dimethylsulfoniopropionate Metabolism by Pfiesteria-Associated Roseobacter Spp publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.70.6.3383-3391.2004 – volume: 101 start-page: 6536 year: 2004 ident: B60 article-title: Estimating Metazoan Divergence Times With a Molecular Clock publication-title: Proc. Natl. Acad. Sci. U. S. A. doi: 10.1073/pnas.0401670101 – start-page: 65 year: 2010 ident: B41 article-title: Coral Reef Biodiversity publication-title: Life World’s Oceans: Diversity Distribution Abundance doi: 10.1002/9781444325508.ch4 – volume: 2 year: 2007 ident: B15 article-title: Exceptionally Preserved Jellyfishes From the Middle Cambrian publication-title: PLoS One doi: 10.1371/journal.pone.0001121 – volume: 4 start-page: 1 year: 2006 ident: B7 article-title: Corals of the K/T-Boundary: Scleractinian Corals of the Suborders Astrocoeniina, Faviina, Rhipidogyrina and Amphiastraeina publication-title: J. Syst. Palaeontol. doi: 10.1017/S1477201905001689 – volume: 3 start-page: 260 year: 2006 ident: B10 article-title: Seasonal and Diurnal Cycles of Dimethylsulfide, Dimethylsulfoniopropionate and Dimethylsulfoxide at One Tree Reef Lagoon. Environ publication-title: Chem. Lett. doi: 10.1071/EN06011 – start-page: 143 volume-title: Biological and Environmental Chemistry of DMSP and Related Sulfonium Compounds year: 1996 ident: B33 article-title: “Dimethylsulfoniopropionate Production in Phototrophic Organisms and its Physiological Functions as a Cryoprotectant doi: 10.1007/978-1-4613-0377-0_13 – volume: 25 start-page: 233 year: 2010 ident: B2 article-title: The Future of Coral Reefs: A Microbial Perspective publication-title: Trends Ecol. Evol. doi: 10.1016/j.tree.2009.11.001 – volume-title: With Emphasis on Morphology, Phylogeny and Biogeography year: 1999 ident: B92 article-title: Staghorn Corals of the World: A Revision of the Coral Genus Acropora (Scleractinia; Astrocoeniina; Acroporidae) Worldwide – volume: 38 start-page: 139 year: 2009 ident: B18 article-title: Recent Insights Into Cnidarian Phylogeny publication-title: Smithson. Contrib. Mar. Sci. doi: 10.5479/si.01960768.38.139 – volume: 9 year: 2014 ident: B38 article-title: Insights Into the Regulation of DMSP Synthesis in the Diatom Thalassiosira Pseudonana Through APR Activity, Proteomics and Gene Expression Analyses on Cells Acclimating to Changes in Salinity, Light and Nitrogen publication-title: PLoS One doi: 10.1371/journal.pone.0094795 – volume: 14 start-page: 132 year: 2018 ident: B4 article-title: El Niño Invaders: The Occurrence of the by-the-Wind Sailor Velella Velella (Linnaeus 1758) in the Southeastern Pacific publication-title: Spixiana doi: 10.3800/pbr.14.206 – start-page: 41 volume-title: The Cnidaria, Past, Present and Future year: 2016 ident: B40 article-title: The New Systematics of Scleractinia: Integrating Molecular and Morphological Evidence doi: 10.1007/978-3-319-31305-4_4 – volume: 21 start-page: 732 year: 2020 ident: B16 article-title: CDe Novo Transcriptome Assembly From The Gonads of a Scleractinian Coral, Euphyllia Ancora: Molecular Mechanisms Underlying Scleractinian Gametogenesis publication-title: PBMC Genomics doi: 10.1186/s12864-020-07113-9 – start-page: 167 volume-title: Biogenic Sulfur in the Environment year: 1989 ident: B37 article-title: “Dimethylsulfide Production in Marine Phytoplankton doi: 10.1021/bk-1989-0393.ch011 – volume: 11 start-page: 1 year: 2011 ident: B82 article-title: The Ancient Evolutionary Origins of Scleractinia Revealed by Azooxanthellate Corals publication-title: BMC Evol. Biol. doi: 10.1186/1471-2148-11-316 – volume: 11 start-page: 1374 year: 2019 ident: B98 article-title: The Whole-Genome Sequence of the Coral Acropora Millepora. Genome Biol publication-title: Evol doi: 10.1093/gbe/evz077 – volume: 6 start-page: 1357 year: 2021 ident: B72 article-title: Dimethyl Sulfide Mediates Microbial Predator-Prey Interactions Between Zooplankton and Algae in the Ocean publication-title: Nat. Microbiol. doi: 10.1038/s41564-021-00971-3 – volume: 25 start-page: 1 year: 1990 ident: B54 article-title: The Role of Symbiotic Algae in Carbon and Energy Flux in Reef Corals publication-title: Coral. Reefs. – volume: 83 start-page: 245 year: 2007 ident: B79 article-title: Environmental Constraints on the Production and Removal of the Climatically Active Gas Dimethylsulphide (DMS) and Implications for Ecosystem Modelling publication-title: Biogeochemistry doi: 10.1007/s10533-007-9091-5 – volume: 18 start-page: 612 year: 2017 ident: B1 article-title: Transcriptomic Analysis of the Response of Acropora Millepora to Hypo-Osmotic Stress Provides Insights Into DMSP Biosynthesis by Corals publication-title: BMC Genomics doi: 10.1186/s12864-017-3959-0 – volume: 10 start-page: 7545 year: 2010 ident: B96 article-title: Low Sensitivity of Cloud Condensation Nuclei to Changes in the Sea-Air Flux of Dimethyl-Sulphide publication-title: Atmos. Chem. Phys. doi: 10.5194/acp-10-7545-2010 – volume: 97 start-page: 11 year: 1993 ident: B89 article-title: Production of DMS From Dissolved DMSP in Axenic Cultures of the Marine Phytoplankton Species Phaeocystis Sp publication-title: Mar. Ecol. Prog. Ser. doi: 10.3354/meps097011 – volume: 70 start-page: 635 year: 2021 ident: B52 article-title: Phylogenomics, Origin, and Diversification of Anthozoans (Phylum Cnidaria) publication-title: Syst. Biol. doi: 10.1093/sysbio/syaa103 – volume: 48 start-page: 217 year: 2003 ident: B83 article-title: Chemical Defense in the Microplankton I: Feeding and Growth Rates of Heterotrophic Protists on the DMS-Producing Phytoplankter Emiliania Huxleyi publication-title: Limnol. Oceanogr. doi: 10.4319/lo.2003.48.1.0217 – volume: 34 start-page: 525 year: 2016 ident: B8 article-title: Near-Optimal Probabilistic RNA-Seq Quantification publication-title: Nat. Biotechnol. doi: 10.1038/nbt.3519 – volume: 3 start-page: 430 year: 2018 ident: B20 article-title: DSYB Catalyses the Key Step of Dimethylsulfoniopropionate Biosynthesis in Many Phytoplankton publication-title: Nat. Microbiol. doi: 10.1038/s41564-018-0119-5 – volume: 123 start-page: 235 year: 1995 ident: B78 article-title: DMSP-Lyase Activity in a Spring Phytoplankton Bloom Off the Dutch Coast, Related to Phaeocystis Sp. Abundance publication-title: Mar. Ecol. Prog. Ser. doi: 10.3354/meps123235 – volume: 5 start-page: 400 year: 1977 ident: B87 article-title: Global Synchroneity of Late Quaternary Coccolith Datum Levels Validation by Oxygen Isotopes publication-title: Geology doi: 10.1130/0091-7613(1977)5<400:GSOLQC>2.0.CO;2 – volume: 62 start-page: 329 year: 2012 ident: B59 article-title: Estimation of Divergence Times in Cnidarian Evolution Based on Mitochondrial Protein-Coding Genes and the Fossil Record publication-title: Mol. Phylogenet. Evol. doi: 10.1016/j.ympev.2011.10.008 – volume: 418 start-page: 317 year: 2002 ident: B84 article-title: An Antioxidant Function for DMSP and DMS in Marine Algae publication-title: Nature doi: 10.1038/nature00851 – volume: 41 start-page: 1151 year: 1996 ident: B94 article-title: Grazing-Activated Production of Dimethyl Sulfide (DMS) by Two Clones of Emiliania Huxleyi publication-title: Limnol. Oceanogr. doi: 10.4319/lo.1996.41.6.1151 – volume: 14 start-page: 1 year: 1998 ident: B30 article-title: Virus-Mediated Total Release of Dimethylsulfoniopropionate From Marine Phytoplankton: A Potential Climate Process publication-title: Aquat. Microb. Ecol. doi: 10.3354/ame014001 – volume: 18 start-page: 1 year: 2018 ident: B36 article-title: Phylogenomics Provides a Robust Topology of the Major Cnidarian Lineages and Insights on the Origins of Key Organismal Traits publication-title: BMC Evol. Biol. doi: 10.1186/s12862-018-1142-0 – volume: 75 start-page: 3492 year: 2009 ident: B65 article-title: Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur publication-title: Appl. Environ. doi: 10.1128/AEM.02567-08 – volume: 19 start-page: 25 year: 2000 ident: B12 article-title: Diversity and Extinction in the Cenozoic History of Caribbean Reefs publication-title: Coral. Reefs. doi: 10.1007/s003380050222 – volume: 68 start-page: 253 year: 2006 ident: B44 article-title: Oxidative Stress in Marine Environments: Biochemistry and Physiological Ecology publication-title: Annu. Rev. Physiol. doi: 10.1146/annurev.physiol.68.040104.110001 – volume: 59 start-page: 758 year: 2014 ident: B22 article-title: Effects of Environmental Factors on Dimethylated Sulfur Compounds and Their Potential Role in the Antioxidant System of the Coral Holobiont publication-title: Limnol. Oceanogr. doi: 10.4319/lo.2014.59.3.0758 – start-page: 9 volume-title: Proc. 12th Int. Coral Reef Symp year: 2012 ident: B85 article-title: Dimethylsulfide, Climate and Coral Reef Ecosystems – volume: 387 start-page: 891 year: 1997 ident: B25 article-title: A New Route for Synthesis of Dimethylsulphoniopropionate in Marine Algae publication-title: Nature doi: 10.1038/43160 – volume: 10 start-page: 9922 year: 2020 ident: B28 article-title: Dimethylsulfoniopropionate Concentration in Coral Reef Invertebrates Varies According to Species Assemblages publication-title: Sci. Rep. doi: 10.1038/s41598-020-66290-5 – volume: 17 start-page: 10 year: 2011 ident: B50 article-title: Cutadapt Removes Adapter Sequences From High-Throughput Sequencing Reads publication-title: EMBnet. J. doi: 10.14806/ej.17.1.200 – volume: 117 start-page: 273 year: 1998 ident: B42 article-title: Dimethylsulfoniopropionate Biosynthesis in Spartina Alterniflora1. Evidence That S-Methylmethionine and Dimethylsulfoniopropylamine Are Intermediates publication-title: Plant Physiol. doi: 10.1104/pp.117.1.273 – volume: 23 start-page: 490 year: 2015 ident: B63 article-title: Nitrogen Cycling in Corals: The Key to Understanding Holobiont Functioning publication-title: Trends Microbiol. doi: 10.1016/j.tim.2015.03.008 – volume: 281 start-page: 20141202 year: 2014 ident: B46 article-title: Haootia Quadriformis N. Gen. N. sp. Interpreted Muscular Cnidarian Impression Late Ediacaran Period (Approx. 560 Ma) publication-title: Proc. R. Soc. B.: Biol. Sci. doi: 10.1098/rspb.2014.1202 – volume: 40 start-page: 503 year: 2001 ident: B57 article-title: A Review of the Coccolithophorid Emiliania Huxleyi (Prymnesiophyceae), With Particular Reference to Growth, Coccolith Formation, and Calcification-Photosynthesis Interactions publication-title: Phycologia doi: 10.2216/i0031-8884-40-6-503.1 – volume: 115 start-page: 5235 year: 2018 ident: B17 article-title: CRISPR/Cas9-Mediated Genome Editing in a Reef-Building Coral publication-title: Proc. Natl. Acad. Sci. U. S. A. doi: 10.1073/pnas.1722151115 – volume: 2 year: 2011 ident: B66 article-title: Bacterial Catabolism of Dimethylsulfoniopropionate (DMSP) publication-title: Front. Microbiol. doi: 10.3389/fmicb.2011.00172 – start-page: 523 volume-title: The Cnidaria, Past, Present and Future year: 2016 ident: B49 article-title: “Survey of Cnidarian Gene Expression Profiles in Response to Environmental Stressors: Summarizing 20 Years of Research, What are We Heading for?,” doi: 10.1007/978-3-319-31305-4_32 – volume: 476 start-page: 320 year: 2011 ident: B74 article-title: Using the Acropora Digitifera Genome to Understand Coral Responses to Environmental Change publication-title: Nature doi: 10.1038/nature10249 – volume: 13 year: 2021 ident: B75 article-title: Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites Australiensis Vaughan 1918 publication-title: Genome Biol. Evol. doi: 10.1093/gbe/evab270 – volume: 68 start-page: 5804 year: 2002 ident: B99 article-title: Dimethylsulfoniopropionate: Its Sources, Role in the Marine Food Web, and Biological Degradation to Dimethylsulfide publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.68.12.5804-5815.2002 – volume: 315 start-page: 506 year: 2007 ident: B88 article-title: Strong Relationship Between DMS and the Solar Radiation Dose Over the Global Surface Ocean publication-title: Science doi: 10.1126/science.1133680 – volume: 201 start-page: 73 year: 1996 ident: B80 article-title: Enzymatic Cleavage of Dimethylsulfoniopropionate (DMSP) in Cell-Free Extracts of the Marine Macroalga Enteromorpha Clathrata (Roth) Grev. (Ulvales, Chlorophyta) publication-title: J. Exp. Mar. Biol. Ecol. doi: 10.1016/0022-0981(95)00207-3 – volume: 6 start-page: 1351 year: 2021 ident: B86 article-title: Acrylate Protects a Marine Bacterium From Grazing by a Ciliate Predator publication-title: Nat. Microbiol. doi: 10.1038/s41564-021-00981-1 – volume: 105 start-page: 103 year: 1994 ident: B29 article-title: Biosynthesis of 3-Dimethylsulfoniopropionate in Wollastonia Biflora (L.) DC. (Eevidence That S-Methylmethionine Is an Intermediate) publication-title: Plant Physiol. doi: 10.1104/pp.105.1.103 – volume: 67 start-page: 1043 year: 2000 ident: B69 article-title: Molecular Phylogenetic Hypotheses for the Evolution of Scleractinian Corals publication-title: Bull. Mar. Sci. – volume: 136 start-page: 759 year: 2000 ident: B56 article-title: DMSP-Lyase Activity in Five Marine Phytoplankton Species: Its Potential Importance in DMS Production publication-title: Mar. Biol. doi: 10.1007/s002279900235 – volume: 38 start-page: 16 year: 2021 ident: B73 article-title: Eighteen Coral Genomes Reveal the Evolutionary Origin of Acropora Strategies to Accommodate Environmental Changes publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msaa216 – volume: 2 year: 2016 ident: B24 article-title: Photosymbiosis and the Expansion of Shallow-Water Corals publication-title: Sci. Adv. doi: 10.1126/sciadv.1601122 – volume: 55 start-page: 849 year: 2004 ident: B9 article-title: DMS and DMSP in Mucus Ropes, Coral Mucus, Surface Films and Sediment Pore Waters From Coral Reefs in the Great Barrier Reef publication-title: Mar. Freshw. Res. doi: 10.1071/MF04114 – volume: 76 start-page: 229 year: 2012 ident: B21 article-title: Cell Biology of Cnidarian-Dinoflagellate Symbiosis publication-title: Microbiol. Mol. Biol. Rev. doi: 10.1128/MMBR.05014-11 – volume: 30 start-page: 3059 year: 2002 ident: B34 article-title: MAFFT: A Novel Method for Rapid Multiple Sequence Alignment Based on Fast Fourier Transform publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkf436 – volume-title: Corals of the World year: 2000 ident: B91 – volume: 387 start-page: 894 year: 1997 ident: B95 article-title: Grazing-Activated Chemical Defence in a Unicellular Marine Alga publication-title: Nature doi: 10.1038/43168 |
SSID | ssj0001340549 |
Score | 2.2196667 |
Snippet | Dimethlysulfoniopropionate (DMSP) lyase is an enzyme that mediates cleavage of DMSP into dimethyl sulfide (DMS) and acrylate. DMS is an aerosol substance that... |
SourceID | doaj crossref |
SourceType | Open Website Enrichment Source Index Database |
SubjectTerms | Acropora Cnidaria DMPS lyase DMS evolution Scleractinia |
Title | Evolutionary History of DMSP Lyase-Like Genes in Animals and Their Possible Involvement in Evolution of the Scleractinian Coral Genus, Acropora |
URI | https://doaj.org/article/e63b3a660fb84e309b3b183307acaf21 |
Volume | 9 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV3JSgQxEA3iSQRxxZ0cPImNmU7SnRzHZVAZF1DBW5POAoOaER2F-Qp_2ap0O85JL15DuihSD6peJ_WKkL2AVbSQOhNlAIKCg9yNFz5zuZaQboXmqSns8qo4uxcXD_JhatQXvglr5IGbgzv0Ba-5KQoWaiU8Z7rmNcAQoGmsCamFPIecN0Wm0t8VDoWI0M01JrAwDWECogh8MM8BG1olVcSfRDSl158SS2-RLLQVIe02niyRGR-Xyfy19Sa2ctIr5PP0o4WIeR3TRtpjTIeBnlze3tD-GFJR1h88eooq0m90EGk3Dp4BWdRER-_wMoDeDBH-T56eRzCWZMJHuHNiGu1BOUhvwY3UOxUBOvQYW_jR7vvbAe3iwC9YWCX3vdO747OsHaWQWcg_o8w5paTpWKQHJQ9WMMNUGSQTQjKel1LXXpfWBeWCrEOZO5xpZZh1EKtceb5GZuMw-nVCjZEeSFZQPEgRvNHKGht0YWSHl47xDcK-z7Wyrc44jrt4qoBvYCiqFIoKQ1E1odgg-5NPXhqRjd82H2GwJhtRHzstAGqqFjXVX6jZ_A8jW2QO_cKHYx2-TWZHr-9-B0qUUb2b0PgFP4bkyA |
linkProvider | Directory of Open Access Journals |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Evolutionary+History+of+DMSP+Lyase-Like+Genes+in+Animals+and+Their+Possible+Involvement+in+Evolution+of+the+Scleractinian+Coral+Genus%2C+Acropora&rft.jtitle=Frontiers+in+Marine+Science&rft.au=Chiu%2C+Yi-Ling&rft.au=Shinzato%2C+Chuya&rft.date=2022-06-13&rft.issn=2296-7745&rft.eissn=2296-7745&rft.volume=9&rft_id=info:doi/10.3389%2Ffmars.2022.889866&rft.externalDBID=n%2Fa&rft.externalDocID=10_3389_fmars_2022_889866 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2296-7745&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2296-7745&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2296-7745&client=summon |