QTL discovery for agronomic and quality traits in diploid potato clones using PotatoMASH amplicon sequencing

• Published in: G3 : genes - genomes - genetics Vol. 14; no. 10
• Main Authors: Vexler, Lea, Leyva-Perez, Maria de la O, Konkolewska, Agnieszka, Clot, Corentin R, Byrne, Stephen, Griffin, Denis, Ruttink, Tom, Hutten, Ronald C B, Engelen, Christel, Visser, Richard G F, Prigge, Vanessa, Wagener, Silke, Lairy-Joly, Gisele, Driesprong, Jan-David, Riis Sundmark, Ea Høegh, Rookmaker, A Nico O, van Eck, Herman J, Milbourne, Dan
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 07.10.2024
• Subjects: Alleles; Chromosome Mapping; Diploidy; Genome-Wide Association Study - methods; Genotype; Haplotypes; Phenotype; Plant Genetics and Genomics; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Quantitative Trait, Heritable; Sequence Analysis, DNA - methods; Solanum tuberosum - genetics; haplotypes; GWAS; diploid potato; PotatoMASH; QTL; SNPs; diploid breeding

We genotyped a population of 618 diploid potato clones derived from six independent potato-breeding programmes from NW-Europe. The diploids were phenotyped for 23 traits, using standardized protocols and common check varieties, enabling us to derive whole population estimators for most traits. We su...