Examining residual spatial correlation in variation partitioning of beta diversity in a subtropical forest
Abstract Aims The relative roles of ecological processes in structuring beta diversity are usually quantified by variation partitioning of beta diversity with respect to environmental and spatial variables or gamma diversity. However, if important environmental or spatial factors are omitted, or a s...
Saved in:
Published in | Journal of plant ecology Vol. 12; no. 4; pp. 636 - 644 |
---|---|
Main Authors | , , , , , , , |
Format | Journal Article |
Language | English |
Published |
01.08.2019
|
Online Access | Get full text |
Cover
Loading…
Abstract | Abstract
Aims
The relative roles of ecological processes in structuring beta diversity are usually quantified by variation partitioning of beta diversity with respect to environmental and spatial variables or gamma diversity. However, if important environmental or spatial factors are omitted, or a scale mismatch occurs in the analysis, unaccounted spatial correlation will appear in the residual errors and lead to residual spatial correlation and problematic inferences.
Methods
Multi-scale ordination (MSO) partitions the canonical ordination results by distance into a set of empirical variograms which characterize the spatial structures of explanatory, conditional and residual variance against distance. Then these variance components can be used to diagnose residual spatial correlation by checking assumptions related to geostatistics or regression analysis. In this paper, we first illustrate the performance of MSO using a simulated data set with known properties, thus making statistical issues explicit. We then test for significant residual spatial correlation in beta diversity analyses of the Gutianshan (GTS) 24-ha subtropical forest plot in eastern China.
Important Findings
Even though we used up to 24 topographic and edaphic variables mapped at high resolution and spatial variables representing spatial structures at all scales, we still found significant residual spatial correlation at the 10 m × 10 m quadrat scale. This invalidated the analysis and inferences at this scale. We also show that MSO provides a complementary tool to test for significant residual spatial correlation in beta diversity analyses. Our results provided a strong argument supporting the need to test for significant residual spatial correlation before interpreting the results of beta diversity analyses. |
---|---|
AbstractList | Abstract
Aims
The relative roles of ecological processes in structuring beta diversity are usually quantified by variation partitioning of beta diversity with respect to environmental and spatial variables or gamma diversity. However, if important environmental or spatial factors are omitted, or a scale mismatch occurs in the analysis, unaccounted spatial correlation will appear in the residual errors and lead to residual spatial correlation and problematic inferences.
Methods
Multi-scale ordination (MSO) partitions the canonical ordination results by distance into a set of empirical variograms which characterize the spatial structures of explanatory, conditional and residual variance against distance. Then these variance components can be used to diagnose residual spatial correlation by checking assumptions related to geostatistics or regression analysis. In this paper, we first illustrate the performance of MSO using a simulated data set with known properties, thus making statistical issues explicit. We then test for significant residual spatial correlation in beta diversity analyses of the Gutianshan (GTS) 24-ha subtropical forest plot in eastern China.
Important Findings
Even though we used up to 24 topographic and edaphic variables mapped at high resolution and spatial variables representing spatial structures at all scales, we still found significant residual spatial correlation at the 10 m × 10 m quadrat scale. This invalidated the analysis and inferences at this scale. We also show that MSO provides a complementary tool to test for significant residual spatial correlation in beta diversity analyses. Our results provided a strong argument supporting the need to test for significant residual spatial correlation before interpreting the results of beta diversity analyses. |
Author | Yu, Mingjian Cao, Ke Mi, Xiangcheng Zhang, Jintun Chen, Jianhua Ma, Keping Zhang, Liwen Ren, Haibao |
Author_xml | – sequence: 1 givenname: Ke surname: Cao fullname: Cao, Ke organization: Key Laboratory of Biodiversity Sciences and Ecological Engineering, Ministry of Education, College of Life Sciences, Beijing Normal University, Beijing, China, State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing, China – sequence: 2 givenname: Xiangcheng surname: Mi fullname: Mi, Xiangcheng organization: State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing, China – sequence: 3 givenname: Liwen surname: Zhang fullname: Zhang, Liwen organization: Key Laboratory of Coastal Zone Environmental Processes, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China – sequence: 4 givenname: Haibao surname: Ren fullname: Ren, Haibao organization: State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing, China – sequence: 5 givenname: Mingjian surname: Yu fullname: Yu, Mingjian organization: College of Life Sciences, Zhejiang University, Hangzhou, China – sequence: 6 givenname: Jianhua surname: Chen fullname: Chen, Jianhua organization: College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua , China – sequence: 7 givenname: Jintun surname: Zhang fullname: Zhang, Jintun organization: Key Laboratory of Biodiversity Sciences and Ecological Engineering, Ministry of Education, College of Life Sciences, Beijing Normal University, Beijing, China – sequence: 8 givenname: Keping orcidid: 0000-0001-9112-5340 surname: Ma fullname: Ma, Keping organization: State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing, China |
BookMark | eNpNkMtqwzAUREVJoUnaTb9A64IbyfLrLktIHxDopoXujKxHkXEkIymh_vvKuIuuZu4wdxZng1bWWYXQPSWPlADb9aPa-TiRsrlCa1qXeQbAvlb__A3ahNATUhUpWaP-8MNPxhr7jb0KRp75gMPIo0kqnPdqSN5ZbCy-cG-WY-Q-mtnNb07jTkWOpbkoH0yc5i7H4dxF70Yj0pB2aTveomvNh6Du_nSLPp8PH_vX7Pj-8rZ_OmYir-qYUShKwQSRmjU5k0BBNBIUo5o0us6BljktoJO8IkVX6oZ2oAQ0Yg5AFhXboodlV3gXgle6Hb05cT-1lLQzpTZRahdK7Be4GWDP |
CitedBy_id | crossref_primary_10_3390_agriculture12070985 crossref_primary_10_3389_fevo_2020_00224 crossref_primary_10_1093_jpe_rtac059 crossref_primary_10_1002_ecs2_3403 |
Cites_doi | 10.2307/2937096 10.1890/02-0738 10.1890/04-0914 10.1111/j.1600-0706.2009.17758.x 10.2307/1940179 10.1890/09-1359.1 10.1111/j.1461-0248.2010.01552.x 10.1111/j.1365-2745.2005.01071.x 10.1016/j.cageo.2004.03.012 10.1126/science.1208584 10.1111/geb.12413 10.2307/1939924 10.1098/rstb.2011.0063 10.1111/j.1466-8238.2006.00279.x 10.1034/j.1600-0587.2002.250508.x 10.1641/0006-3568(2004)054[0227:DTSSOS]2.0.CO;2 10.1073/pnas.1523683113 10.1890/03-3184 10.1890/05-0549 10.1016/S0304-3800(01)00501-4 10.1016/j.ecolmodel.2006.02.015 10.1890/07-1880.1 10.1890/03-3111 10.1126/science.1066854 10.1111/j.1466-8238.2009.00506.x 10.1007/s11104-011-0839-2 10.1111/geb.12527 10.1073/pnas.0604666104 |
ContentType | Journal Article |
DBID | AAYXX CITATION |
DOI | 10.1093/jpe/rty058 |
DatabaseName | CrossRef |
DatabaseTitle | CrossRef |
DatabaseTitleList | CrossRef |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Botany |
EISSN | 1752-993X |
EndPage | 644 |
ExternalDocumentID | 10_1093_jpe_rty058 |
GroupedDBID | .2P .I3 0R~ 4.4 48X 5GY 5VS 70D AAIMJ AAJKP AAMDB AAMVS AAOGV AAPQZ AAPXW AAUQX AAVAP AAVLN AAYXX ABEUO ABIXL ABJNI ABNKS ABPTD ABQLI ABXVV ABZBJ ACGFS ACPRK ACUFI ADBBV ADEYI ADFTL ADGZP ADHKW ADHZD ADOCK ADPDF ADRIX ADRTK ADYVW ADZTZ ADZXQ AEGPL AEJOX AEKSI AELWJ AEMDU AENEX AENZO AEPUE AETBJ AEWNT AFIYH AFOFC AFRAH AFXEN AGINJ AGKEF AGSYK AHXPO AIJHB AKHUL AKWXX ALMA_UNASSIGNED_HOLDINGS ALUQC APIBT APWMN ARIXL AXUDD AYOIW BAYMD BCRHZ BEYMZ BHONS BQDIO BSWAC CDBKE CITATION CS3 CZ4 DAKXR DILTD D~K EBD EBS ECGQY EDH EE~ F9B FHSFR FLUFQ FOEOM FQBLK GAUVT GJXCC H13 H5~ HAR HW0 HZ~ IOX J21 KOP KSI KSN M-Z M49 N9A NGC NLBLG NU- O9- OAWHX ODMLO OJQWA OK1 OVD OVEED PAFKI PEELM Q1. Q5Y RD5 ROX RUSNO RW1 RXO TEORI TLC TOX W8F X7H YAYTL YKOAZ YXANX ~91 |
ID | FETCH-LOGICAL-c267t-1945c3c0df3823d919c8d9e31f08f729152149bda604b5f81b9ec98cda609d463 |
ISSN | 1752-993X |
IngestDate | Fri Aug 23 00:17:40 EDT 2024 |
IsDoiOpenAccess | false |
IsOpenAccess | true |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 4 |
Language | English |
LinkModel | OpenURL |
MergedId | FETCHMERGED-LOGICAL-c267t-1945c3c0df3823d919c8d9e31f08f729152149bda604b5f81b9ec98cda609d463 |
ORCID | 0000-0001-9112-5340 |
OpenAccessLink | https://academic.oup.com/jpe/article-pdf/12/4/636/29117444/rty058.pdf |
PageCount | 9 |
ParticipantIDs | crossref_primary_10_1093_jpe_rty058 |
PublicationCentury | 2000 |
PublicationDate | 2019-08-01 |
PublicationDateYYYYMMDD | 2019-08-01 |
PublicationDate_xml | – month: 08 year: 2019 text: 2019-08-01 day: 01 |
PublicationDecade | 2010 |
PublicationTitle | Journal of plant ecology |
PublicationYear | 2019 |
References | Holland (2019081011544665900_CIT0011) 2004; 54 John (2019081011544665900_CIT0012) 2007; 104 Peres-Neto (2019081011544665900_CIT0021) 2010; 19 Dray (2019081011544665900_CIT0010) 2006; 196 Borcard (2019081011544665900_CIT0004) 2004; 85 Ulrich (2019081011544665900_CIT0024) 2017; 26 Anderson (2019081011544665900_CIT0001) 2011; 14 Hubbell (2019081011544665900_CIT0011a) 2001 Legendre (2019081011544665900_CIT0016) 1993; 74 Legendre (2019081011544665900_CIT0018) 2002; 25 Bennett (2019081011544665900_CIT0002) 2016; 25 Borcard (2019081011544665900_CIT0005) 1992; 73 Kraft (2019081011544665900_CIT0015) 2011; 333 Wagner (2019081011544665900_CIT0025) 2004; 85 Zhu (2019081011544665900_CIT0028) 2010; 119 Dormann (2019081011544665900_CIT0009) 2007; 16 Zhang (2019081011544665900_CIT0027) 2011; 347 Legendre (2019081011544665900_CIT0017) 2005; 75 Legendre (2019081011544665900_CIT0019) 2009; 90 Wagner (2019081011544665900_CIT0026) 2005; 86 Legendre (2019081011544665900_CIT0020) 2012 Condit (2019081011544665900_CIT0007) 2002; 295 Jones (2019081011544665900_CIT0013) 2006; 94 Couteron (2019081011544665900_CIT0008) 2005; 86 Chase (2019081011544665900_CIT0006) 2011; 366 Oksanen (2019081011544665900_CIT0020a) 2015 Rossi (2019081011544665900_CIT0023) 1992; 62 de Knegt (2019081011544665900_CIT0014) 2010; 91 Pebesma (2019081011544665900_CIT0020b) 2004; 30 Borcard (2019081011544665900_CIT0003) 2002; 153 Ricklefs (2019081011544665900_CIT0022) 2016; 113 |
References_xml | – volume: 62 start-page: 277 year: 1992 ident: 2019081011544665900_CIT0023 article-title: Geostatistical tools for modeling and interpreting ecological spatial dependence publication-title: Ecol Monogr doi: 10.2307/2937096 contributor: fullname: Rossi – volume: 85 start-page: 342 year: 2004 ident: 2019081011544665900_CIT0025 article-title: Direct multi-scale ordination with canonical correspondence analysis publication-title: Ecology doi: 10.1890/02-0738 contributor: fullname: Wagner – volume: 86 start-page: 1975 year: 2005 ident: 2019081011544665900_CIT0026 article-title: Spatial analysis of landscapes: concepts and statistics publication-title: Ecology doi: 10.1890/04-0914 contributor: fullname: Wagner – volume: 119 start-page: 109 year: 2010 ident: 2019081011544665900_CIT0028 article-title: Density dependence is prevalent in a heterogeneous subtropical forest publication-title: Oikos doi: 10.1111/j.1600-0706.2009.17758.x contributor: fullname: Zhu – volume: 73 start-page: 1045 year: 1992 ident: 2019081011544665900_CIT0005 article-title: Partialling out the spatial component of ecological variation publication-title: Ecology doi: 10.2307/1940179 contributor: fullname: Borcard – volume: 91 start-page: 2455 year: 2010 ident: 2019081011544665900_CIT0014 article-title: Spatial autocorrelation and the scaling of species–environment relationships publication-title: Ecology doi: 10.1890/09-1359.1 contributor: fullname: de Knegt – volume: 14 start-page: 19 year: 2011 ident: 2019081011544665900_CIT0001 article-title: Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist publication-title: Ecol Lett doi: 10.1111/j.1461-0248.2010.01552.x contributor: fullname: Anderson – year: 2012 ident: 2019081011544665900_CIT0020 article-title: Numerical Ecology contributor: fullname: Legendre – year: 2001 ident: 2019081011544665900_CIT0011a article-title: The unified neutral theory of biodiversity and biogeography (MPB-32). (monographs in population biology) contributor: fullname: Hubbell – volume: 94 start-page: 181 year: 2006 ident: 2019081011544665900_CIT0013 article-title: Effects of mesoscale environmental heterogeneity and dispersal limitation on floristic variation in rain forest ferns publication-title: J Ecol doi: 10.1111/j.1365-2745.2005.01071.x contributor: fullname: Jones – volume: 30 start-page: 683 year: 2004 ident: 2019081011544665900_CIT0020b article-title: Multivariable geostatistics in S: the gstat package publication-title: Comput Geosci doi: 10.1016/j.cageo.2004.03.012 contributor: fullname: Pebesma – volume: 333 start-page: 1755 year: 2011 ident: 2019081011544665900_CIT0015 article-title: Disentangling the drivers of β diversity along latitudinal and elevational gradients publication-title: Science doi: 10.1126/science.1208584 contributor: fullname: Kraft – volume: 25 start-page: 368 year: 2016 ident: 2019081011544665900_CIT0002 article-title: Contrasting beta diversity among regions: how do classical and multivariate approaches compare? publication-title: Glob Ecol Biogeogr doi: 10.1111/geb.12413 contributor: fullname: Bennett – volume: 74 start-page: 1659 year: 1993 ident: 2019081011544665900_CIT0016 article-title: Spatial autocorrelation: trouble or new paradigm? publication-title: Ecology doi: 10.2307/1939924 contributor: fullname: Legendre – volume: 366 start-page: 2351 year: 2011 ident: 2019081011544665900_CIT0006 article-title: Disentangling the importance of ecological niches from stochastic processes across scales publication-title: Philos Trans R Soc Lond B Biol Sci doi: 10.1098/rstb.2011.0063 contributor: fullname: Chase – volume: 16 start-page: 129 year: 2007 ident: 2019081011544665900_CIT0009 article-title: Effects of incorporating spatial autocorrelation into the analysis of species distribution data publication-title: Glob Ecol Biogeogr doi: 10.1111/j.1466-8238.2006.00279.x contributor: fullname: Dormann – volume: 25 start-page: 601 year: 2002 ident: 2019081011544665900_CIT0018 article-title: The consequences of spatial structure for the design and analysis of ecological field surveys publication-title: Ecography doi: 10.1034/j.1600-0587.2002.250508.x contributor: fullname: Legendre – volume: 54 start-page: 227 year: 2004 ident: 2019081011544665900_CIT0011 article-title: Determining the spatial scale of species’ response to habitat publication-title: Bioscience doi: 10.1641/0006-3568(2004)054[0227:DTSSOS]2.0.CO;2 contributor: fullname: Holland – volume: 113 start-page: 674 year: 2016 ident: 2019081011544665900_CIT0022 article-title: Region effects influence local tree species diversity publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.1523683113 contributor: fullname: Ricklefs – volume: 86 start-page: 828 year: 2005 ident: 2019081011544665900_CIT0008 article-title: A generalized, variogram-based framework for multi-scale ordination publication-title: Ecology doi: 10.1890/03-3184 contributor: fullname: Couteron – volume: 75 start-page: 435 year: 2005 ident: 2019081011544665900_CIT0017 article-title: Analyzing beta diversity: partitioning the spatial variation of community composition data publication-title: Ecol Monogr doi: 10.1890/05-0549 contributor: fullname: Legendre – volume: 153 start-page: 51 year: 2002 ident: 2019081011544665900_CIT0003 article-title: All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices publication-title: Ecol Modell doi: 10.1016/S0304-3800(01)00501-4 contributor: fullname: Borcard – volume: 196 start-page: 483 year: 2006 ident: 2019081011544665900_CIT0010 article-title: Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM) publication-title: Ecol Modell doi: 10.1016/j.ecolmodel.2006.02.015 contributor: fullname: Dray – volume: 90 start-page: 663 year: 2009 ident: 2019081011544665900_CIT0019 article-title: Partitioning beta diversity in a subtropical broad-leaved forest of China publication-title: Ecology doi: 10.1890/07-1880.1 contributor: fullname: Legendre – volume: 85 start-page: 1826 year: 2004 ident: 2019081011544665900_CIT0004 article-title: Dissecting the spatial structure of ecological data at multiple scales publication-title: Ecology doi: 10.1890/03-3111 contributor: fullname: Borcard – volume: 295 start-page: 666 year: 2002 ident: 2019081011544665900_CIT0007 article-title: Beta-diversity in tropical forest trees publication-title: Science doi: 10.1126/science.1066854 contributor: fullname: Condit – volume: 19 start-page: 174 year: 2010 ident: 2019081011544665900_CIT0021 article-title: Estimating and controlling for spatial structure in the study of ecological communities publication-title: Glob Ecol Biogeogr doi: 10.1111/j.1466-8238.2009.00506.x contributor: fullname: Peres-Neto – year: 2015 ident: 2019081011544665900_CIT0020a article-title: vegan: Community Ecology Package. R Package Version 2.3-0 contributor: fullname: Oksanen – volume: 347 start-page: 211 year: 2011 ident: 2019081011544665900_CIT0027 article-title: Strong plant-soil associations in a heterogeneous subtropical broad-leaved forest publication-title: Plant Soil doi: 10.1007/s11104-011-0839-2 contributor: fullname: Zhang – volume: 26 start-page: 1 year: 2017 ident: 2019081011544665900_CIT0024 article-title: The tangled link between β- and γ-diversity: a Narcissus effect weakens statistical inferences in null model analyses of diversity patterns publication-title: Glob Ecol Biogeogr doi: 10.1111/geb.12527 contributor: fullname: Ulrich – volume: 104 start-page: 864 year: 2007 ident: 2019081011544665900_CIT0012 article-title: Soil nutrients influence spatial distributions of tropical tree species publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.0604666104 contributor: fullname: John |
SSID | ssj0064752 |
Score | 2.2082343 |
Snippet | Abstract
Aims
The relative roles of ecological processes in structuring beta diversity are usually quantified by variation partitioning of beta diversity with... |
SourceID | crossref |
SourceType | Aggregation Database |
StartPage | 636 |
Title | Examining residual spatial correlation in variation partitioning of beta diversity in a subtropical forest |
Volume | 12 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LT9wwELaWx6EXREur8qosldsqJZuHYx8BgVZVVS6LlNvKr6BF7SYKWV53_jfjOA6my4FyiXYtO1rt92nm83hmjNABy1SYRZQHUSx4ANYvDAT4xSDNmNIyogB5m23xm4wvkp95mg8Gj17W0qIRP-TDq3Ul70EVxgBXUyX7H8j2L4UB-Az4whMQhuebMD6943_bCx6GsGm2VVXXJkO67flR112emwlp3MCW2H6pzHtcFBaUotANH6o-OwPm8uH1QjR1WbnqRncCtaxhqz8AzFDLF7H5E17aip8ezDZjIAciXgJFOlfpB6t_zW69ijRrCMd8JnjpByVMHRR1QQlrR7M0CkD65NbNvDLmjG_kkSzxLCmJieeUiW0SuWTvbS-sq0rDs27uQ9sG_mVb7X_cXZ-EaI_f4ymsntq1K2gtAntlDOXkPHcOnSRZe3FT__tdl1sWH8LaQ7vW0zWeQJlsoo0OFXxkafIRDfT8E1o_LkH932-hq54r2HEFd1zBHlfwbI57rmCfK7gssOEK7rli5nLscQVbrnxGF2enk5Nx0N2zEciIZE0wYkkqYxmqwhwKKzZikiqm41ER0gI2X0biJUwoTsJEpAVsdJiWjEozwFRC4i9odV7O9VeEY8I0B0maUa1A6RDOlJKSFiMRSZoWcht9d__StLLtVKbLOOy8adYu-vBMvT202tQLvQ8KsRHfWvyeAAoncC4 |
link.rule.ids | 315,783,787,27936,27937 |
linkProvider | Oxford University Press |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Examining+residual+spatial+correlation+in+variation+partitioning+of+beta+diversity+in+a+subtropical+forest&rft.jtitle=Journal+of+plant+ecology&rft.au=Cao%2C+Ke&rft.au=Mi%2C+Xiangcheng&rft.au=Zhang%2C+Liwen&rft.au=Ren%2C+Haibao&rft.date=2019-08-01&rft.issn=1752-993X&rft.eissn=1752-993X&rft.volume=12&rft.issue=4&rft.spage=636&rft.epage=644&rft_id=info:doi/10.1093%2Fjpe%2Frty058&rft.externalDBID=n%2Fa&rft.externalDocID=10_1093_jpe_rty058 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1752-993X&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1752-993X&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1752-993X&client=summon |