Complete chloroplast genomes of five Aegilops aucheri Boiss. accessions having different geographical origins

The subject of this study is Boiss. 1844: a member of the section , subsection . This species is infrequently included in phylogenetic studies and is commonly regarded as a heterotypic synonym of Tausch. The aim of this study was to detect genetic differences between and using the phylogenetic signa...

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Published inMitochondrial DNA. Part A. DNA mapping, sequencing, and analysis Vol. 35; no. 3-4; pp. 119 - 125
Main Authors Kuluev, Azat R., Matniyazov, Rustam T., Kuluev, Bulat R., Chemeris, Dmitry A., Chemeris, Alexey V.
Format Journal Article
LanguageEnglish
Published England 19.05.2025
Subjects
Aegilops - classification
Aegilops - genetics
DNA, Chloroplast - genetics
Genome, Chloroplast
Phylogeny
Polymorphism, Single Nucleotide
Sequence Analysis, DNA
Aegilops speltoides
phylogeny
Sitopsis
Truncata
chloroplast genome
Online AccessGet full text
ISSN2470-1394
2470-1408
2470-1408
DOI10.1080/24701394.2025.2476401

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Abstract The subject of this study is Boiss. 1844: a member of the section , subsection . This species is infrequently included in phylogenetic studies and is commonly regarded as a heterotypic synonym of Tausch. The aim of this study was to detect genetic differences between and using the phylogenetic signal retrieved from chloroplast genomes. Plastomes of five accessions from different geographical locations were sequenced, annotated, and subjected to a phylogenetic analysis. Plastome sizes were found to range between 135,666 and 135,668 bp in . Comparative analysis of the chloroplast genome sequences from five accessions revealed single-nucleotide polymorphisms (SNPs) and insertions/deletions (indels) relative to the plastome. To gain a more comprehensive understanding of the genetic divergence within the subsection, sequencing the nuclear genome of and comparing it to that of is essential.
AbstractList The subject of this study is Boiss. 1844: a member of the section , subsection . This species is infrequently included in phylogenetic studies and is commonly regarded as a heterotypic synonym of Tausch. The aim of this study was to detect genetic differences between and using the phylogenetic signal retrieved from chloroplast genomes. Plastomes of five accessions from different geographical locations were sequenced, annotated, and subjected to a phylogenetic analysis. Plastome sizes were found to range between 135,666 and 135,668 bp in . Comparative analysis of the chloroplast genome sequences from five accessions revealed single-nucleotide polymorphisms (SNPs) and insertions/deletions (indels) relative to the plastome. To gain a more comprehensive understanding of the genetic divergence within the subsection, sequencing the nuclear genome of and comparing it to that of is essential.
The subject of this study is Aegilops aucheri Boiss. 1844: a member of the section Sitopsis, subsection Truncata. This species is infrequently included in phylogenetic studies and is commonly regarded as a heterotypic synonym of Aegilops speltoides Tausch. The aim of this study was to detect genetic differences between Ae. aucheri and Ae. speltoides using the phylogenetic signal retrieved from chloroplast genomes. Plastomes of five Ae. aucheri accessions from different geographical locations were sequenced, annotated, and subjected to a phylogenetic analysis. Plastome sizes were found to range between 135,666 and 135,668 bp in Ae. aucheri. Comparative analysis of the chloroplast genome sequences from five Ae. aucheri accessions revealed single-nucleotide polymorphisms (SNPs) and insertions/deletions (indels) relative to the Ae. speltoides plastome. To gain a more comprehensive understanding of the genetic divergence within the Truncata subsection, sequencing the nuclear genome of Ae. aucheri and comparing it to that of Ae. speltoides is essential.The subject of this study is Aegilops aucheri Boiss. 1844: a member of the section Sitopsis, subsection Truncata. This species is infrequently included in phylogenetic studies and is commonly regarded as a heterotypic synonym of Aegilops speltoides Tausch. The aim of this study was to detect genetic differences between Ae. aucheri and Ae. speltoides using the phylogenetic signal retrieved from chloroplast genomes. Plastomes of five Ae. aucheri accessions from different geographical locations were sequenced, annotated, and subjected to a phylogenetic analysis. Plastome sizes were found to range between 135,666 and 135,668 bp in Ae. aucheri. Comparative analysis of the chloroplast genome sequences from five Ae. aucheri accessions revealed single-nucleotide polymorphisms (SNPs) and insertions/deletions (indels) relative to the Ae. speltoides plastome. To gain a more comprehensive understanding of the genetic divergence within the Truncata subsection, sequencing the nuclear genome of Ae. aucheri and comparing it to that of Ae. speltoides is essential.
Author Kuluev, Azat R.
Kuluev, Bulat R.
Chemeris, Alexey V.
Matniyazov, Rustam T.
Chemeris, Dmitry A.
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Keywords Aegilops speltoides
phylogeny
Sitopsis
Truncata
chloroplast genome
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The subject of this study is Aegilops aucheri Boiss. 1844: a member of the section Sitopsis, subsection Truncata. This species is infrequently included in...
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SubjectTerms Aegilops - classification
Aegilops - genetics
DNA, Chloroplast - genetics
Genome, Chloroplast
Phylogeny
Polymorphism, Single Nucleotide
Sequence Analysis, DNA
Title Complete chloroplast genomes of five Aegilops aucheri Boiss. accessions having different geographical origins
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