DH_Aligner: A fast short-read aligner on multicore platforms with AVX vectorization

• Published in: Journal of parallel and distributed computing Vol. 205; p. 105142
• Main Authors: Qiao, Sun, Feng, Chen, Leisheng, Li, Huiyuan, Li
• Format: Journal Article
• Language: English
• Published: Elsevier Inc 01.11.2025
• Subjects: AVX vectorization; DH_Aligner; Fast short-read alignment; Performance engineering; Fast short-read alignment; AVX vectorization; Performance engineering; DH_Aligner

The rapid development of the NGS (Next-Generation Sequencing) technology leads to massive genome data produced at a much higher throughput than before, which leads to great demand for downstream fast and accurate genetic analysis. As one of the first steps of bio-informatical work-flow, read alignme...