Parallel protein multiple sequence alignment approaches: a systematic literature review

• Published in: The Journal of supercomputing Vol. 79; no. 2; pp. 1201 - 1234
• Main Authors: Almanza-Ruiz, Sergio H., Chavoya, Arturo, Duran-Limon, Hector A.
• Format: Journal Article
• Language: English
• Published: New York Springer US 01.02.2023; Springer Nature B.V
• Subjects: Algorithms; Alignment; Bioinformatics; Compilers; Computer Science; Digital systems; Dynamic programming; Interpreters; Literature reviews; Processor Architectures; Programming Languages; Proteins; Search engines; Systematic review; Systematic review; Parallel programming; Multiple sequence alignment; Protein

Multiple sequence alignment approaches refer to algorithmic solutions for the alignment of biological sequences. Since multiple sequence alignment has exponential time complexity when a dynamic programming approach is applied, a substantial number of parallel computing approaches have been implement...