Integrating datasets from herbarium specimens and images to treat a Neotropical myrtle species complex

Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitized collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relyi...

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Published inAnnals of botany Vol. 135; no. 6; pp. 1075 - 1092
Main Authors Gaem, Paulo Henrique, Andrella, Giovani Carlos, Maurin, Olivier, Bittrich, Volker, Mazine, Fiorella Fernanda, Lucas, Eve, Estanislau do Amaral, Maria do Carmo
Format Journal Article
LanguageEnglish
Published England 14.07.2025
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Abstract Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitized collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relying exclusively on herbarium specimens to investigate species boundaries in the Neotropical Myrcia neoobscura complex (Myrtaceae). We collected morphometric data from high-resolution images of herbarium sheets and analysed them using hierarchical clustering. We posteriorly tested the obtained morpho-groups with phylogenomics using the Angiosperms353 probe kit. We also gathered phenological and geographical information from specimen labels and built phenological histograms and ecological niche models to investigate ecological differences amongst taxa. Current circumscriptions of Myrcia arenaria, Myrcia neoglabra and Myrcia neoregeliana are confirmed in this study. Conversely, the four pieces of evidence together support Calyptranthes langsdorffii var. grandiflora, Marlierea regeliana var. parviflora and Marlierea warmingiana as separate from Myrcia marliereana, Myrcia neoriedeliana and Myrcia neoobscura, respectively, contrary to arrangements proposed by previous authors. Integrated analyses also support separation between Myrcia excoriata and two similar, undescribed taxa. Our data reveal the need for major changes in the systematics of the group, with recognition of 12 species. The successful delivery of our study aims was possible due to obtaining robust, high-quality data from museum specimens. We emphasize the importance of maintaining botanical collections physically and digitally available for taxonomic work and advocate their use to accelerate taxonomic solutions of tropical species complexes hollistically. This is urgent, given the paucity of funds for fieldwork and unprecedented rates of habitat loss in the tropics.
AbstractList Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitized collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relying exclusively on herbarium specimens to investigate species boundaries in the Neotropical Myrcia neoobscura complex (Myrtaceae). We collected morphometric data from high-resolution images of herbarium sheets and analysed them using hierarchical clustering. We posteriorly tested the obtained morpho-groups with phylogenomics using the Angiosperms353 probe kit. We also gathered phenological and geographical information from specimen labels and built phenological histograms and ecological niche models to investigate ecological differences amongst taxa. Current circumscriptions of Myrcia arenaria, Myrcia neoglabra and Myrcia neoregeliana are confirmed in this study. Conversely, the four pieces of evidence together support Calyptranthes langsdorffii var. grandiflora, Marlierea regeliana var. parviflora and Marlierea warmingiana as separate from Myrcia marliereana, Myrcia neoriedeliana and Myrcia neoobscura, respectively, contrary to arrangements proposed by previous authors. Integrated analyses also support separation between Myrcia excoriata and two similar, undescribed taxa. Our data reveal the need for major changes in the systematics of the group, with recognition of 12 species. The successful delivery of our study aims was possible due to obtaining robust, high-quality data from museum specimens. We emphasize the importance of maintaining botanical collections physically and digitally available for taxonomic work and advocate their use to accelerate taxonomic solutions of tropical species complexes hollistically. This is urgent, given the paucity of funds for fieldwork and unprecedented rates of habitat loss in the tropics.
Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitised collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relying exclusively on herbarium specimens to investigate species boundaries in the Neotropical Myrcia neoobscura complex (Myrtaceae).BACKGROUND AND AIMSHerbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitised collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relying exclusively on herbarium specimens to investigate species boundaries in the Neotropical Myrcia neoobscura complex (Myrtaceae).We collected morphometric data from high-resolution images of herbarium sheets and analysed it using hierarchical clustering. We posteriorly tested the obtained morpho-groups with phylogenomics using the Angiosperms353 probe kit. We also gathered phenological and geographic information from specimen labels and built phenological histograms and ecological niche models to investigate ecological differences amongst taxa.METHODSWe collected morphometric data from high-resolution images of herbarium sheets and analysed it using hierarchical clustering. We posteriorly tested the obtained morpho-groups with phylogenomics using the Angiosperms353 probe kit. We also gathered phenological and geographic information from specimen labels and built phenological histograms and ecological niche models to investigate ecological differences amongst taxa.Current circumscriptions of Myrcia arenaria, Myrcia neoglabra and Myrcia neoregeliana are confirmed in this study. Conversely, the four pieces of evidence together support Calyptranthes langsdorffii var. grandiflora, Marlierea regeliana var. parviflora and Marlierea warmingiana as separate from Myrcia marliereana, Myrcia neoriedeliana and Myrcia neoobscura, respectively, contrary to arrangements proposed by previous authors. Integrated analyses also support separation between Myrcia excoriata and two similar, undescribed taxa.KEY RESULTSCurrent circumscriptions of Myrcia arenaria, Myrcia neoglabra and Myrcia neoregeliana are confirmed in this study. Conversely, the four pieces of evidence together support Calyptranthes langsdorffii var. grandiflora, Marlierea regeliana var. parviflora and Marlierea warmingiana as separate from Myrcia marliereana, Myrcia neoriedeliana and Myrcia neoobscura, respectively, contrary to arrangements proposed by previous authors. Integrated analyses also support separation between Myrcia excoriata and two similar, undescribed taxa.Our data reveal the need for major changes in the systematics of the group, with recognition of 12 species. The successful delivery of our study aims was possible due to obtaining robust, high-quality data from museum specimens. We emphasise the importance of maintaining botanical collections physically and digitally available for taxonomic work and advocate their use to accelerate holistic taxonomic solutions of tropical species complexes. This is urgent, given the paucity of funds for fieldwork and unprecedented rates of habitat loss in the tropics.CONCLUSIONSOur data reveal the need for major changes in the systematics of the group, with recognition of 12 species. The successful delivery of our study aims was possible due to obtaining robust, high-quality data from museum specimens. We emphasise the importance of maintaining botanical collections physically and digitally available for taxonomic work and advocate their use to accelerate holistic taxonomic solutions of tropical species complexes. This is urgent, given the paucity of funds for fieldwork and unprecedented rates of habitat loss in the tropics.
Author Estanislau do Amaral, Maria do Carmo
Maurin, Olivier
Bittrich, Volker
Andrella, Giovani Carlos
Gaem, Paulo Henrique
Mazine, Fiorella Fernanda
Lucas, Eve
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Keywords herbariomics
integrative taxonomy
Calyptranthes
Marlierea
Myrcia
Myrciinae
phenology
Myrtaceae
environmental niche modelling
Myrteae
geometric morphometrics
Language English
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Snippet Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitized collections and...
Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitised collections and...
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SubjectTerms Myrtaceae - anatomy & histology
Myrtaceae - classification
Myrtaceae - genetics
Phylogeny
Title Integrating datasets from herbarium specimens and images to treat a Neotropical myrtle species complex
URI https://www.ncbi.nlm.nih.gov/pubmed/39431944
https://www.proquest.com/docview/3118837248
Volume 135
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