Integrating datasets from herbarium specimens and images to treat a Neotropical myrtle species complex
Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitized collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relyi...
Saved in:
Published in | Annals of botany Vol. 135; no. 6; pp. 1075 - 1092 |
---|---|
Main Authors | , , , , , , |
Format | Journal Article |
Language | English |
Published |
England
14.07.2025
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitized collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relying exclusively on herbarium specimens to investigate species boundaries in the Neotropical Myrcia neoobscura complex (Myrtaceae).
We collected morphometric data from high-resolution images of herbarium sheets and analysed them using hierarchical clustering. We posteriorly tested the obtained morpho-groups with phylogenomics using the Angiosperms353 probe kit. We also gathered phenological and geographical information from specimen labels and built phenological histograms and ecological niche models to investigate ecological differences amongst taxa.
Current circumscriptions of Myrcia arenaria, Myrcia neoglabra and Myrcia neoregeliana are confirmed in this study. Conversely, the four pieces of evidence together support Calyptranthes langsdorffii var. grandiflora, Marlierea regeliana var. parviflora and Marlierea warmingiana as separate from Myrcia marliereana, Myrcia neoriedeliana and Myrcia neoobscura, respectively, contrary to arrangements proposed by previous authors. Integrated analyses also support separation between Myrcia excoriata and two similar, undescribed taxa.
Our data reveal the need for major changes in the systematics of the group, with recognition of 12 species. The successful delivery of our study aims was possible due to obtaining robust, high-quality data from museum specimens. We emphasize the importance of maintaining botanical collections physically and digitally available for taxonomic work and advocate their use to accelerate taxonomic solutions of tropical species complexes hollistically. This is urgent, given the paucity of funds for fieldwork and unprecedented rates of habitat loss in the tropics. |
---|---|
AbstractList | Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitized collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relying exclusively on herbarium specimens to investigate species boundaries in the Neotropical Myrcia neoobscura complex (Myrtaceae).
We collected morphometric data from high-resolution images of herbarium sheets and analysed them using hierarchical clustering. We posteriorly tested the obtained morpho-groups with phylogenomics using the Angiosperms353 probe kit. We also gathered phenological and geographical information from specimen labels and built phenological histograms and ecological niche models to investigate ecological differences amongst taxa.
Current circumscriptions of Myrcia arenaria, Myrcia neoglabra and Myrcia neoregeliana are confirmed in this study. Conversely, the four pieces of evidence together support Calyptranthes langsdorffii var. grandiflora, Marlierea regeliana var. parviflora and Marlierea warmingiana as separate from Myrcia marliereana, Myrcia neoriedeliana and Myrcia neoobscura, respectively, contrary to arrangements proposed by previous authors. Integrated analyses also support separation between Myrcia excoriata and two similar, undescribed taxa.
Our data reveal the need for major changes in the systematics of the group, with recognition of 12 species. The successful delivery of our study aims was possible due to obtaining robust, high-quality data from museum specimens. We emphasize the importance of maintaining botanical collections physically and digitally available for taxonomic work and advocate their use to accelerate taxonomic solutions of tropical species complexes hollistically. This is urgent, given the paucity of funds for fieldwork and unprecedented rates of habitat loss in the tropics. Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitised collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relying exclusively on herbarium specimens to investigate species boundaries in the Neotropical Myrcia neoobscura complex (Myrtaceae).BACKGROUND AND AIMSHerbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitised collections and herbarium DNA sequencing, can help accelerate taxonomic decisions in challenging plant groups. Here we employ an integrative methodology relying exclusively on herbarium specimens to investigate species boundaries in the Neotropical Myrcia neoobscura complex (Myrtaceae).We collected morphometric data from high-resolution images of herbarium sheets and analysed it using hierarchical clustering. We posteriorly tested the obtained morpho-groups with phylogenomics using the Angiosperms353 probe kit. We also gathered phenological and geographic information from specimen labels and built phenological histograms and ecological niche models to investigate ecological differences amongst taxa.METHODSWe collected morphometric data from high-resolution images of herbarium sheets and analysed it using hierarchical clustering. We posteriorly tested the obtained morpho-groups with phylogenomics using the Angiosperms353 probe kit. We also gathered phenological and geographic information from specimen labels and built phenological histograms and ecological niche models to investigate ecological differences amongst taxa.Current circumscriptions of Myrcia arenaria, Myrcia neoglabra and Myrcia neoregeliana are confirmed in this study. Conversely, the four pieces of evidence together support Calyptranthes langsdorffii var. grandiflora, Marlierea regeliana var. parviflora and Marlierea warmingiana as separate from Myrcia marliereana, Myrcia neoriedeliana and Myrcia neoobscura, respectively, contrary to arrangements proposed by previous authors. Integrated analyses also support separation between Myrcia excoriata and two similar, undescribed taxa.KEY RESULTSCurrent circumscriptions of Myrcia arenaria, Myrcia neoglabra and Myrcia neoregeliana are confirmed in this study. Conversely, the four pieces of evidence together support Calyptranthes langsdorffii var. grandiflora, Marlierea regeliana var. parviflora and Marlierea warmingiana as separate from Myrcia marliereana, Myrcia neoriedeliana and Myrcia neoobscura, respectively, contrary to arrangements proposed by previous authors. Integrated analyses also support separation between Myrcia excoriata and two similar, undescribed taxa.Our data reveal the need for major changes in the systematics of the group, with recognition of 12 species. The successful delivery of our study aims was possible due to obtaining robust, high-quality data from museum specimens. We emphasise the importance of maintaining botanical collections physically and digitally available for taxonomic work and advocate their use to accelerate holistic taxonomic solutions of tropical species complexes. This is urgent, given the paucity of funds for fieldwork and unprecedented rates of habitat loss in the tropics.CONCLUSIONSOur data reveal the need for major changes in the systematics of the group, with recognition of 12 species. The successful delivery of our study aims was possible due to obtaining robust, high-quality data from museum specimens. We emphasise the importance of maintaining botanical collections physically and digitally available for taxonomic work and advocate their use to accelerate holistic taxonomic solutions of tropical species complexes. This is urgent, given the paucity of funds for fieldwork and unprecedented rates of habitat loss in the tropics. |
Author | Estanislau do Amaral, Maria do Carmo Maurin, Olivier Bittrich, Volker Andrella, Giovani Carlos Gaem, Paulo Henrique Mazine, Fiorella Fernanda Lucas, Eve |
Author_xml | – sequence: 1 givenname: Paulo Henrique orcidid: 0000-0003-3054-7325 surname: Gaem fullname: Gaem, Paulo Henrique – sequence: 2 givenname: Giovani Carlos surname: Andrella fullname: Andrella, Giovani Carlos – sequence: 3 givenname: Olivier surname: Maurin fullname: Maurin, Olivier – sequence: 4 givenname: Volker surname: Bittrich fullname: Bittrich, Volker – sequence: 5 givenname: Fiorella Fernanda surname: Mazine fullname: Mazine, Fiorella Fernanda – sequence: 6 givenname: Eve surname: Lucas fullname: Lucas, Eve – sequence: 7 givenname: Maria do Carmo surname: Estanislau do Amaral fullname: Estanislau do Amaral, Maria do Carmo |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/39431944$$D View this record in MEDLINE/PubMed |
BookMark | eNo9kE1LxDAQhoOsuB968i45ClI3adI2PYr4sbDoRc9lmk7XStPUJAX33xvZ1dPAzPMOvM-SzAY7ICGXnN1yVoo12HptNCBX4oQs4ipLVFqyGVkwwbKkELmck6X3n4yxNC_5GZmLUgpeSrkg7WYIuHMQumFHGwjgMXjaOmvoB7oaXDcZ6kfUncHBUxga2hnYoafB0uAQAgX6gjY4O3Yaemr2LvR4iERKWzP2-H1OTlvoPV4c54q8Pz683T8n29enzf3dNtGpLEMidKpKpjk0KWsyLPOmkDKrizrLEWORhjOEVPEMc1lnoBQDKXXOWqHjKc3Filwf_o7Ofk3oQ2U6r7HvYUA7-UpwrpQoUqkienVEp9pgU40uFnP76s9NBG4OgHbWe4ftP8JZ9Wu-iuaro3nxAzDVd_Y |
Cites_doi | 10.1371/journal.pone.0169748 10.1111/j.1365-294X.2005.02480.x 10.1146/annurev-ecolsys-112414-054400 10.1016/j.tree.2009.01.009 10.1111/2041-210X.12628 10.3389/fpls.2020.00258 10.1016/j.ympev.2018.10.015 10.1093/aob/mcv005 10.1016/0377-0427(87)90125-7 10.1016/j.csda.2006.11.025 10.1111/j.1558-5646.2008.00482.x 10.1016/j.ppees.2016.11.001 10.1080/07352689.2018.1471565 10.1093/aob/mcac005 10.1080/10635150701701083 10.3417/2014015 10.2307/1222975 10.3389/fpls.2021.759460 10.1093/molbev/msz240 10.1002/ajb2.1699 10.3389/fpls.2019.01102 10.1186/s12859-018-2129-y 10.1016/j.biocon.2022.109525 10.1016/j.cub.2016.08.049 10.1002/tax.596001 10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2 10.1093/sysbio/syy086 10.1093/bioinformatics/btm619 10.1016/j.envsoft.2019.104615 10.1371/journal.pone.0206043 10.1093/molbev/mst010 10.1016/j.ympev.2023.107869 10.1016/j.biocon.2023.110379 10.1111/ddi.13004 10.1089/cmb.2012.0021 10.1186/s12864-018-4620-2 10.1086/715639 10.1016/j.ympev.2019.106668 10.1371/journal.pone.0043808 10.1093/sysbio/syab035 10.1016/j.ecolmodel.2020.109180 10.1016/j.tplants.2020.12.018 10.3732/apps.1600016 10.1007/s12228-015-9407-z 10.1038/nmeth.2089 10.1111/2041-210X.13450 10.1093/bioinformatics/bty633 10.1016/j.ympev.2020.107043 10.1371/journal.pone.0186025 10.1093/aob/mcad018 10.1093/bioinformatics/btu170 10.1186/s12862-019-1427-y 10.2307/1935534 10.1093/bioinformatics/btq046 10.1093/molbev/msx261 10.1111/mve.12510 10.1007/978-3-319-24277-4 10.1600/0363644054223701 10.12705/674.5 10.18637/jss.v056.i13 10.1002/9780470977811 10.3389/fpls.2019.01655 |
ContentType | Journal Article |
Copyright | The Author(s) 2024. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For commercial re-use, please contact reprints@oup.com for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site—for further information please contact journals.permissions@oup.com. |
Copyright_xml | – notice: The Author(s) 2024. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For commercial re-use, please contact reprints@oup.com for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site—for further information please contact journals.permissions@oup.com. |
DBID | AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 |
DOI | 10.1093/aob/mcae183 |
DatabaseName | CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic |
DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic |
DatabaseTitleList | MEDLINE MEDLINE - Academic |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Botany |
EISSN | 1095-8290 |
EndPage | 1092 |
ExternalDocumentID | 39431944 10_1093_aob_mcae183 |
Genre | Journal Article |
GrantInformation_xml | – fundername: São Paulo Research Foundation grantid: 2022/02864-1 – fundername: National Council for Scientific and Technological Development grantid: 316035/2021-1 – fundername: Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brasil (CAPES) – fundername: National Council for Scientific and Technological Development grantid: 305105/2022-1 – fundername: Amar-Franses & Foster-Jenkins Trust via Emily Holmes Memorial Scholarship – fundername: São Paulo Research Foundation grantid: 2021/06436-1 – fundername: National Council for Scientific and Technological Development grantid: 140509/2020-8 |
GroupedDBID | --- -DZ -E4 -~X .2P .I3 0R~ 1TH 1~5 23M 4.4 482 48X 4G. 5GY 5VS 5WA 5WD 6J9 7-5 70D 79B AAIMJ AAJKP AAMDB AAMVS AAOGV AAPQZ AAPXW AARHZ AAUAY AAVAP AAVLN AAXTN AAYXX ABDBF ABDFA ABEJV ABEUO ABGNP ABIXL ABJNI ABLJU ABMNT ABNKS ABPPZ ABPQP ABPTD ABQLI ABVGC ABWST ABXVV ABXZS ABZBJ ACGFO ACGFS ACIWK ACNCT ACPRK ACUFI ACUHS ADBBV ADEYI ADEZT ADFTL ADGKP ADGZP ADHKW ADHZD ADIPN ADNBA ADOCK ADQBN ADRTK ADVEK ADYVW ADZTZ ADZXQ AEEJZ AEGPL AEGXH AEJOX AEKSI AELWJ AEMDU AENEX AENZO AEPUE AETBJ AEWNT AFFZL AFGWE AFIYH AFOFC AFRAH AGINJ AGKEF AGORE AGQXC AGSYK AHGBF AHMBA AHXPO AIAGR AIJHB AJBYB AJEEA AJNCP AKHUL AKRWK AKWXX ALMA_UNASSIGNED_HOLDINGS ALUQC ALXQX AOIJS APIBT APWMN ARIXL ATGXG AXUDD AYOIW BAYMD BCRHZ BEYMZ BHONS BQDIO BSWAC CDBKE CITATION COF CS3 CZ4 DAKXR DILTD D~K E3Z EBS EDH EE~ ESX F5P F9B FDB FHSFR FLUFQ FOEOM FQBLK GAUVT GJXCC GX1 H13 H5~ HAR HW0 HZ~ IOX J21 JXSIZ KAQDR KOP KQ8 KSI KSN M-Z N9A NGC NLBLG NOMLY O-L O9- OAWHX OBOKY ODMLO OJQWA OJZSN OK1 OWPYF P2P PAFKI PEELM PQQKQ Q1. Q5Y R44 RD5 ROL ROX RPM RUSNO RW1 RXO TCN TLC TN5 TR2 UPT WH7 WOQ X7H Y6R YAYTL YKOAZ YSK YXANX YZZ ZKX ~02 ~91 ~KM CGR CUY CVF ECM EIF NPM 7X8 AFYAG |
ID | FETCH-LOGICAL-c249t-3c2890c1ad20d5e96d7445b7b56ee736d10ea2815e64b5a880a44c60f3cd10263 |
ISSN | 0305-7364 1095-8290 |
IngestDate | Thu Jul 10 23:40:34 EDT 2025 Fri Jul 18 01:41:09 EDT 2025 Wed Jul 16 16:48:19 EDT 2025 |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 6 |
Keywords | herbariomics integrative taxonomy Calyptranthes Marlierea Myrcia Myrciinae phenology Myrtaceae environmental niche modelling Myrteae geometric morphometrics |
Language | English |
License | https://academic.oup.com/pages/standard-publication-reuse-rights The Author(s) 2024. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For commercial re-use, please contact reprints@oup.com for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site—for further information please contact journals.permissions@oup.com. |
LinkModel | OpenURL |
MergedId | FETCHMERGED-LOGICAL-c249t-3c2890c1ad20d5e96d7445b7b56ee736d10ea2815e64b5a880a44c60f3cd10263 |
Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
ORCID | 0000-0003-3054-7325 |
PMID | 39431944 |
PQID | 3118837248 |
PQPubID | 23479 |
PageCount | 18 |
ParticipantIDs | proquest_miscellaneous_3118837248 pubmed_primary_39431944 crossref_primary_10_1093_aob_mcae183 |
PublicationCentury | 2000 |
PublicationDate | 2025-Jul-14 |
PublicationDateYYYYMMDD | 2025-07-14 |
PublicationDate_xml | – month: 07 year: 2025 text: 2025-Jul-14 day: 14 |
PublicationDecade | 2020 |
PublicationPlace | England |
PublicationPlace_xml | – name: England |
PublicationTitle | Annals of botany |
PublicationTitleAlternate | Ann Bot |
PublicationYear | 2025 |
References | Baker (2025071500564327500_CIT0003) 2022; 71 POWO (2025071500564327500_CIT0049) 2024 Velazco (2025071500564327500_CIT0067) 2017; 12 Schneider (2025071500564327500_CIT0059) 2012; 9 Velazco (2025071500564327500_CIT0068) 2022; 268 Santos (2025071500564327500_CIT0055) 2024 Warren (2025071500564327500_CIT0070) 2008; 62 Rousseeuw (2025071500564327500_CIT0054) 1987; 20 Watson (2025071500564327500_CIT0071) 2016; 26 Giaretta (2025071500564327500_CIT0017) 2022; 12 Santos (2025071500564327500_CIT0056) 2021; 182 Kassambra (2025071500564327500_CIT0029) 2020 Maechler (2025071500564327500_CIT0035) 2022 Hörandl (2025071500564327500_CIT0024) 2010; 59 Zizka (2025071500564327500_CIT0076) 2020; 26 Nic Lughadha (2025071500564327500_CIT0043) 2016 Doyle (2025071500564327500_CIT0015) 1987; 19 Vasconcelos (2025071500564327500_CIT0066) 2017; 24 Andrella (2025071500564327500_CIT0002) 2023; 288 Denham (2025071500564327500_CIT0014) 2019; 130 Lucas (2025071500564327500_CIT0033) 2016; 101 Zhang (2025071500564327500_CIT0075) 2018; 19 Berg (2025071500564327500_CIT0005) 1855; 27 Schoener (2025071500564327500_CIT0060) 1968; 49 Everitt (2025071500564327500_CIT0016) 2011 Sousa-Paula (2025071500564327500_CIT0063) 2021; 35 Wickham (2025071500564327500_CIT0072) 2016 Lima (2025071500564327500_CIT0032) 2021; 157 Hengl (2025071500564327500_CIT0022) 2017; 12 Särkinen (2025071500564327500_CIT0057) 2012; 7 Maurin (2025071500564327500_CIT0037) 2021; 108 Pau (2025071500564327500_CIT0047) 2010; 26 Bankevich (2025071500564327500_CIT0004) 2012; 19 Andrade (2025071500564327500_CIT0001) 2020; 125 Campos (2025071500564327500_CIT0010) 2023; 131 McLay (2025071500564327500_CIT0039) 2023; 187 Borges (2025071500564327500_CIT0008) 2020; 11 Chase (2025071500564327500_CIT0011) 1991; 40 Murphy (2025071500564327500_CIT0042) 2020; 144 Mai (2025071500564327500_CIT0036) 2018; 19 Smith (2025071500564327500_CIT0062) 2008; 24 Degnan (2025071500564327500_CIT0013) 2009; 24 Henderson (2025071500564327500_CIT0020) 2005; 30 Sayyari (2025071500564327500_CIT0058) 2017; 34 Pinheiro (2025071500564327500_CIT0048) 2018; 37 Olson (2025071500564327500_CIT0045) 2001; 51 Reginato (2025071500564327500_CIT0053) 2016; 68 Johnson (2025071500564327500_CIT0026) 2016; 4 Wang (2025071500564327500_CIT0069) 2020; 37 Proença (2025071500564327500_CIT0050) 2022; 129 Yu (2025071500564327500_CIT0073) 2022 Yu (2025071500564327500_CIT0074) 2017; 8 Grace (2025071500564327500_CIT0018) 2021; 26 Hortal (2025071500564327500_CIT0025) 2015; 46 Shee (2025071500564327500_CIT0061) 2020; 11 Brewer (2025071500564327500_CIT0009) 2019; 10 Hendry (2025071500564327500_CIT0021) 2005; 14 Johnson (2025071500564327500_CIT0027) 2019; 68 Hennig (2025071500564327500_CIT0023) 2007; 52 Staggemeier (2025071500564327500_CIT0064) 2015; 115 Heibl (2025071500564327500_CIT0019) 2018 Miller (2025071500564327500_CIT0041) 2023 Karger (2025071500564327500_CIT0028) 2023; 4 Quattrini (2025071500564327500_CIT0051) 2019; 19 Turland (2025071500564327500_CIT0065) 2018 De Queiroz (2025071500564327500_CIT0012) 2007; 56 Bolger (2025071500564327500_CIT0006) 2014; 30 Bonhomme (2025071500564327500_CIT0007) 2014; 56 R Core Team (2025071500564327500_CIT0052) 2024 Larridon (2025071500564327500_CIT0031) 2020; 10 Katoh (2025071500564327500_CIT0030) 2013; 30 Oliveira (2025071500564327500_CIT0044) 2024 Mendes (2025071500564327500_CIT0040) 2020; 431 Mazine (2025071500564327500_CIT0038) 2018; 67 Paradis (2025071500564327500_CIT0046) 2019; 35 Luis (2025071500564327500_CIT0034) 2018; 13 40100288 - Ann Bot. 2025 Jul 14;135(6):i-iv. doi: 10.1093/aob/mcaf001. |
References_xml | – volume: 27 start-page: 1 year: 1855 ident: 2025071500564327500_CIT0005 article-title: Revisio Myrtacearum Americae publication-title: Linnaea – volume: 12 start-page: e0169748 year: 2017 ident: 2025071500564327500_CIT0022 article-title: SoilGrids250m: global gridded soil information based on machine learning publication-title: PLoS One doi: 10.1371/journal.pone.0169748 – volume: 14 start-page: 901 year: 2005 ident: 2025071500564327500_CIT0021 article-title: Population structure attributable to reproductive time: isolation by time and adaptation by time publication-title: Molecular Ecology doi: 10.1111/j.1365-294X.2005.02480.x – volume: 46 start-page: 523 year: 2015 ident: 2025071500564327500_CIT0025 article-title: Seven shortfalls that beset large-scale knowledge of biodiversity publication-title: Annual Review of Ecology, Evolution, and Systematics doi: 10.1146/annurev-ecolsys-112414-054400 – volume: 24 start-page: 332 year: 2009 ident: 2025071500564327500_CIT0013 article-title: Gene tree discordance, phylogenetic inference and the multispecies coalescent publication-title: Trends in Ecology and Evolution doi: 10.1016/j.tree.2009.01.009 – year: 2024 ident: 2025071500564327500_CIT0044 article-title: Reassessing the taxonomy of the Libidibia ferrea complex, the iconic Brazilian tree ‘pau-ferro’ using morphometrics and ecological niche modeling publication-title: Brazilian Journal of Botany – volume: 8 start-page: 28 year: 2017 ident: 2025071500564327500_CIT0074 article-title: ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data publication-title: Methods in Ecology and Evolution doi: 10.1111/2041-210X.12628 – year: 2018 ident: 2025071500564327500_CIT0019 – volume: 11 start-page: 258 year: 2020 ident: 2025071500564327500_CIT0061 article-title: Reconstructing the complex evolutionary history of the Papuasian Schefflera radiation through herbariomics publication-title: Frontiers in Plant Science doi: 10.3389/fpls.2020.00258 – volume: 4 start-page: 1 year: 2023 ident: 2025071500564327500_CIT0028 article-title: Climatologies at high resolution for the earth’s land surface areas publication-title: Scientific Data – volume-title: Myrcia in Flora e Funga do Brasil year: 2024 ident: 2025071500564327500_CIT0055 – volume: 130 start-page: 211 year: 2019 ident: 2025071500564327500_CIT0014 article-title: Using integrative taxonomy and multispecies coalescent models for phylogeny reconstruction and species delimitation within the ‘Nastanthus—Gamocarpha’ clade (Calyceraceae) publication-title: Molecular Phylogenetics and Evolution doi: 10.1016/j.ympev.2018.10.015 – volume: 115 start-page: 747 year: 2015 ident: 2025071500564327500_CIT0064 article-title: Phylogenetic analysis in Myrcia section Aulomyrcia and inferences on plant diversity in the Atlantic rainforest publication-title: Annals of Botany doi: 10.1093/aob/mcv005 – volume: 20 start-page: 53 year: 1987 ident: 2025071500564327500_CIT0054 article-title: Silhouettes: a graphical aid to the interpretation and validation of cluster analysis publication-title: Journal of Computational and Applied Mathematics doi: 10.1016/0377-0427(87)90125-7 – volume: 19 start-page: 11 year: 1987 ident: 2025071500564327500_CIT0015 article-title: A rapid DNA isolation procedure from small quantities of fresh leaf tissues publication-title: Phytochemistry Bulletin – volume: 52 start-page: 258 year: 2007 ident: 2025071500564327500_CIT0023 article-title: Cluster-wise assessment of cluster stability publication-title: Computational Statistics and Data Analysis doi: 10.1016/j.csda.2006.11.025 – volume: 62 start-page: 2868 year: 2008 ident: 2025071500564327500_CIT0070 article-title: Environmental niche equivalency versus conservatism: quantitative approaches to niche evolution publication-title: Evolution doi: 10.1111/j.1558-5646.2008.00482.x – volume: 24 start-page: 11 year: 2017 ident: 2025071500564327500_CIT0066 article-title: Links between parallel evolution and systematic complexity in angiosperms—A case study of floral development in Myrcia s.l. (Myrtaceae) publication-title: Perspectives in Plant Ecology, Evolution and Systematics doi: 10.1016/j.ppees.2016.11.001 – volume: 37 start-page: 54 year: 2018 ident: 2025071500564327500_CIT0048 article-title: Plant species complexes as models to understand speciation and evolution: a review of South American studies publication-title: Critical Reviews in Plant Sciences doi: 10.1080/07352689.2018.1471565 – volume: 129 start-page: 367 year: 2022 ident: 2025071500564327500_CIT0050 article-title: Diversity, phylogeny and evolution of the rapidly evolving genus Psidium L. (Myrtaceae, Myrteae) publication-title: Annals of Botany doi: 10.1093/aob/mcac005 – volume: 56 start-page: 879 year: 2007 ident: 2025071500564327500_CIT0012 article-title: Species concepts and species delimitation publication-title: Systematic Biology doi: 10.1080/10635150701701083 – volume: 101 start-page: 648 year: 2016 ident: 2025071500564327500_CIT0033 article-title: A conspectus of Myrcia sect. Aulomyrcia (Myrtaceae) publication-title: Annals of the Missouri Botanical Garden doi: 10.3417/2014015 – volume: 40 start-page: 215 year: 1991 ident: 2025071500564327500_CIT0011 article-title: Silica gel: an ideal material for field preservation of leaf samples for DNA studies publication-title: Taxon doi: 10.2307/1222975 – volume: 12 start-page: 759460 year: 2022 ident: 2025071500564327500_CIT0017 article-title: Phylogenetic relationships within the hyper-diverse genus Eugenia (Myrtaceae: Myrteae) based on target enrichment sequencing publication-title: Frontiers in Plant Science doi: 10.3389/fpls.2021.759460 – volume: 37 start-page: 599 year: 2020 ident: 2025071500564327500_CIT0069 article-title: Treeio: an R package for phylogenetic tree input and output with richly annotated and associated data publication-title: Molecular Biology and Evolution doi: 10.1093/molbev/msz240 – year: 2022 ident: 2025071500564327500_CIT0073 – volume: 108 start-page: 1087 year: 2021 ident: 2025071500564327500_CIT0037 article-title: A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set publication-title: American Journal of Botany doi: 10.1002/ajb2.1699 – volume: 10 start-page: 1102 year: 2019 ident: 2025071500564327500_CIT0009 article-title: Factors affecting targeted sequencing of 353 nuclear genes from herbarium specimens spanning the diversity of Angiosperms publication-title: Frontiers in Plant Science doi: 10.3389/fpls.2019.01102 – volume: 19 start-page: 153 year: 2018 ident: 2025071500564327500_CIT0075 article-title: ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees publication-title: BMC Bioinformatics doi: 10.1186/s12859-018-2129-y – volume: 268 start-page: 109525 year: 2022 ident: 2025071500564327500_CIT0068 article-title: Quantifying the role of protected areas for safeguarding the uses of biodiversity publication-title: Biological Conservation doi: 10.1016/j.biocon.2022.109525 – volume: 26 start-page: 2929 year: 2016 ident: 2025071500564327500_CIT0071 article-title: Catastrophic declines in wilderness areas undermine global environment targets publication-title: Current Biology: CB doi: 10.1016/j.cub.2016.08.049 – volume: 59 start-page: 1641 year: 2010 ident: 2025071500564327500_CIT0024 article-title: Paraphyletic groups as natural units of biological classification publication-title: Taxon doi: 10.1002/tax.596001 – volume-title: Reflora year: 2016 ident: 2025071500564327500_CIT0043 – volume: 51 start-page: 933 year: 2001 ident: 2025071500564327500_CIT0045 article-title: Terrestrial ecoregions of the world: a new map of life on Earth publication-title: BioScience doi: 10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2 – year: 2022 ident: 2025071500564327500_CIT0035 – volume: 68 start-page: 594 year: 2019 ident: 2025071500564327500_CIT0027 article-title: A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering publication-title: Systematic Biology doi: 10.1093/sysbio/syy086 – volume: 24 start-page: 715 year: 2008 ident: 2025071500564327500_CIT0062 article-title: Phyutility: a phyloinformatics tool for trees, alignments and molecular data publication-title: Bioinformatics doi: 10.1093/bioinformatics/btm619 – volume: 125 start-page: 104615 year: 2020 ident: 2025071500564327500_CIT0001 article-title: ENMTML: an R package for a straightforward construction of complex ecological niche models publication-title: Environmental Modelling and Software doi: 10.1016/j.envsoft.2019.104615 – year: 2023 ident: 2025071500564327500_CIT0041 article-title: Assessing ecological divergence and speciation scenarios of the Paragalago zanzibaricus species complex through climatic niche modeling publication-title: International Journal of Primatology – volume: 13 start-page: e0206043 year: 2018 ident: 2025071500564327500_CIT0034 article-title: Sympatric and allopatric niche shift of endemic Gypsophila (Caryophyllaceae) taxa in the Iberian Peninsula publication-title: PLoS One doi: 10.1371/journal.pone.0206043 – volume-title: Plants of the World Online year: 2024 ident: 2025071500564327500_CIT0049 – volume: 30 start-page: 772 year: 2013 ident: 2025071500564327500_CIT0030 article-title: MAFFT Multiple Sequence Alignment Software Version 7: improvements in performance and usability publication-title: Molecular Biology and Evolution doi: 10.1093/molbev/mst010 – volume: 187 start-page: 107869 year: 2023 ident: 2025071500564327500_CIT0039 article-title: Phylogenomics reveals extreme gene tree discordance in a lineage of dominant trees: hybridization, introgression, and incomplete lineage sorting blur deep evolutionary relationships despite clear species groupings in Eucalyptus subgenus Eudesmia publication-title: Molecular Phylogenetics and Evolution doi: 10.1016/j.ympev.2023.107869 – volume: 288 start-page: 110379 year: 2023 ident: 2025071500564327500_CIT0002 article-title: Considering spatial constraints to identify areas for new species sampling: a species-specific prioritization approach publication-title: Biological Conservation doi: 10.1016/j.biocon.2023.110379 – volume: 26 start-page: 183 year: 2020 ident: 2025071500564327500_CIT0076 article-title: Biogeography and conservation status of the pineapple family (Bromeliaceae) publication-title: Diversity and Distributions doi: 10.1111/ddi.13004 – volume: 19 start-page: 455 year: 2012 ident: 2025071500564327500_CIT0004 article-title: SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing publication-title: Journal of Computational Biology: A Journal of Computational Molecular Cell Biology doi: 10.1089/cmb.2012.0021 – volume: 19 start-page: 272 year: 2018 ident: 2025071500564327500_CIT0036 article-title: TreeShrink: fast and accurate detection of outlier long branches in collection of phylogenetic trees publication-title: BMC Genomics doi: 10.1186/s12864-018-4620-2 – volume: 182 start-page: 778 year: 2021 ident: 2025071500564327500_CIT0056 article-title: Phylogenetic and biogeographic analysis in Myrcia sect. Myrcia (Myrcia s.l., Myrtaceae) with focus on highly polyphyletic Myrcia splendens publication-title: International Journal of Plant Sciences doi: 10.1086/715639 – volume: 144 start-page: 106668 year: 2020 ident: 2025071500564327500_CIT0042 article-title: A phylogenomic analysis of Nepenthes (Nepenthaceae) publication-title: Molecular Phylogenetics and Evolution doi: 10.1016/j.ympev.2019.106668 – volume: 7 start-page: e43808 year: 2012 ident: 2025071500564327500_CIT0057 article-title: How to open the treasure chest? Optimising DNA extraction from herbarium specimens publication-title: PLoS One doi: 10.1371/journal.pone.0043808 – volume: 71 start-page: 301 year: 2022 ident: 2025071500564327500_CIT0003 article-title: A comprehensive phylogenomic platform for exploring the Angiosperm Tree of Life publication-title: Systematic Biology doi: 10.1093/sysbio/syab035 – volume: 431 start-page: 109180 year: 2020 ident: 2025071500564327500_CIT0040 article-title: Dealing with overprediction in species distribution models: how adding distance constraints can improve model accuracy publication-title: Ecological Modelling doi: 10.1016/j.ecolmodel.2020.109180 – volume: 26 start-page: 433 year: 2021 ident: 2025071500564327500_CIT0018 article-title: Botanical monograph in the Anthropocene publication-title: Trends in Plant Science doi: 10.1016/j.tplants.2020.12.018 – year: 2018 ident: 2025071500564327500_CIT0065 – volume: 4 start-page: 1600016 year: 2016 ident: 2025071500564327500_CIT0026 article-title: HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment publication-title: Applications in Plant Sciences doi: 10.3732/apps.1600016 – volume: 68 start-page: 212 year: 2016 ident: 2025071500564327500_CIT0053 article-title: monographaR: an R package to facilitate the production of plant taxonomic monographs publication-title: Brittonia doi: 10.1007/s12228-015-9407-z – volume: 9 start-page: 671 year: 2012 ident: 2025071500564327500_CIT0059 article-title: NIH Image to ImageJ: 25 years of image analysis publication-title: Nature Methods doi: 10.1038/nmeth.2089 – volume: 11 start-page: 1296 year: 2020 ident: 2025071500564327500_CIT0008 article-title: Schrödinger’s phenotypes: herbarium specimens show two-dimensional images are both good and (not so) bad sources of morphological data publication-title: Methods in Ecology and Evolution doi: 10.1111/2041-210X.13450 – volume-title: factoextra: extract and visualize the results of multivariate data analyses year: 2020 ident: 2025071500564327500_CIT0029 – volume: 35 start-page: 526 year: 2019 ident: 2025071500564327500_CIT0046 article-title: ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R publication-title: Bioinformatics doi: 10.1093/bioinformatics/bty633 – volume: 157 start-page: 107043 year: 2021 ident: 2025071500564327500_CIT0032 article-title: Phylogeny and biogeography of Myrcia sect. Aguava (Myrtaceae, Myrteae) based on phylogenomic and Sanger data provide evidence for a Cerrado origin and geographically structured clades publication-title: Molecular Phylogenetics and Evolution doi: 10.1016/j.ympev.2020.107043 – volume-title: R: A language and environment for statistical computing year: 2024 ident: 2025071500564327500_CIT0052 – volume: 12 start-page: e0186025 year: 2017 ident: 2025071500564327500_CIT0067 article-title: Using worldwide edaphic data to model plant species niches: an assessment at a continental extent publication-title: PLoS One doi: 10.1371/journal.pone.0186025 – volume: 131 start-page: 635 year: 2023 ident: 2025071500564327500_CIT0010 article-title: Genomic, spatial and morphometric data for discrimination of four species in the Mediterranean Tamus clade of yams (Dioscorea, Dioscoreaceae) publication-title: Annals of Botany doi: 10.1093/aob/mcad018 – volume: 30 start-page: 2114 year: 2014 ident: 2025071500564327500_CIT0006 article-title: Trimmomatic: a flexible trimmer for Ilumina sequence data publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu170 – volume: 19 start-page: 116 year: 2019 ident: 2025071500564327500_CIT0051 article-title: A next generation approach to species delimitation reveals the role of hybridization in a cryptic species complex of corals publication-title: BMC Evolutionary Biology doi: 10.1186/s12862-019-1427-y – volume: 49 start-page: 704 year: 1968 ident: 2025071500564327500_CIT0060 article-title: The anolis lizards of Bemini: resource partitioning in a complex fauna publication-title: Ecology doi: 10.2307/1935534 – volume: 26 start-page: 979 year: 2010 ident: 2025071500564327500_CIT0047 article-title: EBImage—an R package for image processing with applications to cellular phenotypes publication-title: Bioinformatics doi: 10.1093/bioinformatics/btq046 – volume: 34 start-page: 3279 year: 2017 ident: 2025071500564327500_CIT0058 article-title: Fragmentary gene sequences negatively impact gene tree and species tree reconstruction publication-title: Molecular Biology and Evolution doi: 10.1093/molbev/msx261 – volume: 35 start-page: 267 year: 2021 ident: 2025071500564327500_CIT0063 article-title: Beyond taxonomy: species complexes in New World phlebotomine sand flies publication-title: Medical and Veterinary Entomology doi: 10.1111/mve.12510 – volume-title: Ggplot2: Elegant graphics for data analysis. year: 2016 ident: 2025071500564327500_CIT0072 doi: 10.1007/978-3-319-24277-4 – volume: 30 start-page: 456 year: 2005 ident: 2025071500564327500_CIT0020 article-title: The methods of herbarium taxonomy publication-title: Systematic Botany doi: 10.1600/0363644054223701 – volume: 67 start-page: 752 year: 2018 ident: 2025071500564327500_CIT0038 article-title: Phylogeny and biogeography of the hyper-diverse genus Eugenia (Myrtaceae: Myrteae), with emphasis on E. sect. Umbellatae, the most unmanageable clade publication-title: Taxon doi: 10.12705/674.5 – volume: 56 start-page: 13 year: 2014 ident: 2025071500564327500_CIT0007 article-title: Momocs: outline analysis using R publication-title: Journal of Statistical Software doi: 10.18637/jss.v056.i13 – volume-title: Cluster analysis year: 2011 ident: 2025071500564327500_CIT0016 doi: 10.1002/9780470977811 – volume: 10 start-page: 1655 year: 2020 ident: 2025071500564327500_CIT0031 article-title: Tackling rapid radiations with targeted sequencing publication-title: Frontiers in Plant Science doi: 10.3389/fpls.2019.01655 – reference: 40100288 - Ann Bot. 2025 Jul 14;135(6):i-iv. doi: 10.1093/aob/mcaf001. |
SSID | ssj0002691 |
Score | 2.488181 |
Snippet | Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitized collections and... Herbaria are the most important source of information for plant taxonomic work. Resources and technologies available today, such as digitised collections and... |
SourceID | proquest pubmed crossref |
SourceType | Aggregation Database Index Database |
StartPage | 1075 |
SubjectTerms | Myrtaceae - anatomy & histology Myrtaceae - classification Myrtaceae - genetics Phylogeny |
Title | Integrating datasets from herbarium specimens and images to treat a Neotropical myrtle species complex |
URI | https://www.ncbi.nlm.nih.gov/pubmed/39431944 https://www.proquest.com/docview/3118837248 |
Volume | 135 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1Lb9swDBa2toddhrV7ZY9CA3oLvMaSrCTHbmjRd4Eh2XIzJFsFgsVWkSjAtl8_UpKdFO2AdhchkWPaIL9QJEVShOzxbCDFMDXgmwiRCK5Voo0AQw6sUdYrM6M0ViNfXMrjsTidZJPVGZu-usTpz8Wfe-tK_keqMAdyxSrZR0i2JQoT8BnkCyNIGMYHyfgk9npAdx9TPRfGLULBCEhCgxe8rLpYSokd_EMv5mmlYlMHn2HeVaDlrJvbGy-r6vccyIZb4Fc-3dz8WrdfV_2WtXWNHsH0HWWqJtHQdrHyYRqyuWOMoZxjlpUPwmP2az3FTJOZbQ36C-xu5BXg1WyKS_UqeO_wDAEf_PluZz_jlRinYBkGQEN9aFStYMwluG0bVp67c3eUeWh0payGsSqUScORN7ebZl9e5Ufj8_N8dDgZPSWbDLwFUHebB2fffpy1SzKT_ujE9nGxUBMesA_k9yPx26bJP_wNb3eMXpDn0WGgB0H62-SJqXfI1hfP_Zfkeg0CtIEARQjQFgK0hQAFCNAAAeos9RCgiq5BgAYI0AgBGiHwioyPDkdfj5N4dEZSgD_tEl7gBnKRqtL_4Yay7AuR6b7OpDF9Lsu0ZxQbpJmRQmcKlLgSopC9a17AJSb5a7JR29q8JXQohNJGa_ALtJClUKaQDB1dVsLXnu6QvYZr-U3okJKHzAaeA3PzyNwO-dRwNAcNhttSqjZ2ucg5-LgD3mdi0CFvAqtbQnwIBi68wbsH3P2ePFvh7gPZcPOl-QgWo9O7EQ9_Aeyoc2E |
linkProvider | Library Specific Holdings |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Integrating+datasets+from+herbarium+specimens+and+images+to+treat+a+Neotropical+myrtle+species+complex&rft.jtitle=Annals+of+botany&rft.au=Gaem%2C+Paulo+Henrique&rft.au=Andrella%2C+Giovani+Carlos&rft.au=Maurin%2C+Olivier&rft.au=Bittrich%2C+Volker&rft.date=2025-07-14&rft.issn=1095-8290&rft.eissn=1095-8290&rft_id=info:doi/10.1093%2Faob%2Fmcae183&rft.externalDBID=NO_FULL_TEXT |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0305-7364&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0305-7364&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0305-7364&client=summon |