A Machine Learning–Based Prognostication Model Enhances Prediction of Early Hepatic Encephalopathy in Patients With Noncancer-Related Cirrhosis: Multicenter Longitudinal Cohort Study in Taiwan
Hepatic encephalopathy (HE) contributes significantly to mortality among patients with liver cirrhosis. Early prediction of HE is essential for clinical decision-making, yet remains challenging-particularly in noncancer-related cirrhosis due to the unpredictable disease course. This study aimed to d...
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Published in | JMIR medical informatics Vol. 13; p. e71229 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
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JMIR Publications
06.08.2025
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ISSN | 2291-9694 2291-9694 |
DOI | 10.2196/71229 |
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Abstract | Hepatic encephalopathy (HE) contributes significantly to mortality among patients with liver cirrhosis. Early prediction of HE is essential for clinical decision-making, yet remains challenging-particularly in noncancer-related cirrhosis due to the unpredictable disease course.
This study aimed to develop a novel machine learning (ML) model to improve early prediction of HE in patients with noncancer-related cirrhosis.
A multicenter, retrospective cohort study was conducted from January 2010 to December 2017 across all Chang Gung Memorial Hospital branches in northern, middle, and southern Taiwan. We applied several ML models to evaluate HE predictability and compared their performance in the training dataset and testing dataset. Optimal sensitivity and specificity were determined using the Youden index. The best ML model was interpreted by the Shapley Additive Explanations plot.
A total of 5878 patients with cirrhosis were included in the analysis, of whom 1187 (20.2%) subsequently developed HE. Compared to the non-HE group, patients with HE were older (median age 55, IQR 46-65 vs median age 54, IQR 44-66 years; P=.04) and had higher rates of hepatitis B virus infection (351/1187, 30% vs 961/4691, 20.5%; P<.001), alcohol use (540/1187, 45.5% vs 1512/4691, 32.2%; P<.001), sepsis (393/1187, 33.1% vs 792/4691, 16.9%; P<.001), and mortality (425/1187, 35.8% vs 502/4691, 10.7%; P<.001), along with distinct laboratory abnormalities reflecting liver dysfunction. Among the ML algorithms evaluated, the extreme gradient boosting algorithm demonstrated the highest predictive accuracy, achieving an area under the curve (AUC) of 0.86 (95% CI 0.83-0.88) in the testing dataset. This performance was significantly superior to that of the neural network (AUC 0.79, 95% CI 0.76-0.81; P<.001), support vector machine (AUC 0.77, 95% CI 0.73-0.80; P<.001), and the model for end-stage liver disease score (AUC 0.74, 95% CI 0.71-0.77; P<.001). Using a probability threshold of 0.25, the extreme gradient boosting model demonstrated a sensitivity of 72% (95% CI 0.67-0.77), specificity of 80% (95% CI 0.78-0.82), a positive predictive value of 48% (95% CI 43-53), and a negative predictive value of 92% (95% CI 90-94) in the testing set. Comparable performance was observed in the training dataset, with a sensitivity of 80% (95% CI 0.77-0.83), specificity of 81% (95% CI 0.80-0.82), and a negative predictive value of 94% at the same threshold. The most influential predictive variables identified by the model included serum ammonia, aspartate transaminase, alanine transaminase, prothrombin time, and serum potassium.
We developed a novel ML model for predicting HE in patients with noncancer-related cirrhosis. This model provides a practical guide to help physicians and these patients in shared decision-making regarding treatment strategy, with the ultimate goal of improving clinical care and reducing the burden of HE-related morbid complications. |
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AbstractList | Hepatic encephalopathy (HE) contributes significantly to mortality among patients with liver cirrhosis. Early prediction of HE is essential for clinical decision-making, yet remains challenging-particularly in noncancer-related cirrhosis due to the unpredictable disease course.
This study aimed to develop a novel machine learning (ML) model to improve early prediction of HE in patients with noncancer-related cirrhosis.
A multicenter, retrospective cohort study was conducted from January 2010 to December 2017 across all Chang Gung Memorial Hospital branches in northern, middle, and southern Taiwan. We applied several ML models to evaluate HE predictability and compared their performance in the training dataset and testing dataset. Optimal sensitivity and specificity were determined using the Youden index. The best ML model was interpreted by the Shapley Additive Explanations plot.
A total of 5878 patients with cirrhosis were included in the analysis, of whom 1187 (20.2%) subsequently developed HE. Compared to the non-HE group, patients with HE were older (median age 55, IQR 46-65 vs median age 54, IQR 44-66 years; P=.04) and had higher rates of hepatitis B virus infection (351/1187, 30% vs 961/4691, 20.5%; P<.001), alcohol use (540/1187, 45.5% vs 1512/4691, 32.2%; P<.001), sepsis (393/1187, 33.1% vs 792/4691, 16.9%; P<.001), and mortality (425/1187, 35.8% vs 502/4691, 10.7%; P<.001), along with distinct laboratory abnormalities reflecting liver dysfunction. Among the ML algorithms evaluated, the extreme gradient boosting algorithm demonstrated the highest predictive accuracy, achieving an area under the curve (AUC) of 0.86 (95% CI 0.83-0.88) in the testing dataset. This performance was significantly superior to that of the neural network (AUC 0.79, 95% CI 0.76-0.81; P<.001), support vector machine (AUC 0.77, 95% CI 0.73-0.80; P<.001), and the model for end-stage liver disease score (AUC 0.74, 95% CI 0.71-0.77; P<.001). Using a probability threshold of 0.25, the extreme gradient boosting model demonstrated a sensitivity of 72% (95% CI 0.67-0.77), specificity of 80% (95% CI 0.78-0.82), a positive predictive value of 48% (95% CI 43-53), and a negative predictive value of 92% (95% CI 90-94) in the testing set. Comparable performance was observed in the training dataset, with a sensitivity of 80% (95% CI 0.77-0.83), specificity of 81% (95% CI 0.80-0.82), and a negative predictive value of 94% at the same threshold. The most influential predictive variables identified by the model included serum ammonia, aspartate transaminase, alanine transaminase, prothrombin time, and serum potassium.
We developed a novel ML model for predicting HE in patients with noncancer-related cirrhosis. This model provides a practical guide to help physicians and these patients in shared decision-making regarding treatment strategy, with the ultimate goal of improving clinical care and reducing the burden of HE-related morbid complications. Hepatic encephalopathy (HE) contributes significantly to mortality among patients with liver cirrhosis. Early prediction of HE is essential for clinical decision-making, yet remains challenging-particularly in noncancer-related cirrhosis due to the unpredictable disease course.BackgroundHepatic encephalopathy (HE) contributes significantly to mortality among patients with liver cirrhosis. Early prediction of HE is essential for clinical decision-making, yet remains challenging-particularly in noncancer-related cirrhosis due to the unpredictable disease course.This study aimed to develop a novel machine learning (ML) model to improve early prediction of HE in patients with noncancer-related cirrhosis.ObjectiveThis study aimed to develop a novel machine learning (ML) model to improve early prediction of HE in patients with noncancer-related cirrhosis.A multicenter, retrospective cohort study was conducted from January 2010 to December 2017 across all Chang Gung Memorial Hospital branches in northern, middle, and southern Taiwan. We applied several ML models to evaluate HE predictability and compared their performance in the training dataset and testing dataset. Optimal sensitivity and specificity were determined using the Youden index. The best ML model was interpreted by the Shapley Additive Explanations plot.MethodsA multicenter, retrospective cohort study was conducted from January 2010 to December 2017 across all Chang Gung Memorial Hospital branches in northern, middle, and southern Taiwan. We applied several ML models to evaluate HE predictability and compared their performance in the training dataset and testing dataset. Optimal sensitivity and specificity were determined using the Youden index. The best ML model was interpreted by the Shapley Additive Explanations plot.A total of 5878 patients with cirrhosis were included in the analysis, of whom 1187 (20.2%) subsequently developed HE. Compared to the non-HE group, patients with HE were older (median age 55, IQR 46-65 vs median age 54, IQR 44-66 years; P=.04) and had higher rates of hepatitis B virus infection (351/1187, 30% vs 961/4691, 20.5%; P<.001), alcohol use (540/1187, 45.5% vs 1512/4691, 32.2%; P<.001), sepsis (393/1187, 33.1% vs 792/4691, 16.9%; P<.001), and mortality (425/1187, 35.8% vs 502/4691, 10.7%; P<.001), along with distinct laboratory abnormalities reflecting liver dysfunction. Among the ML algorithms evaluated, the extreme gradient boosting algorithm demonstrated the highest predictive accuracy, achieving an area under the curve (AUC) of 0.86 (95% CI 0.83-0.88) in the testing dataset. This performance was significantly superior to that of the neural network (AUC 0.79, 95% CI 0.76-0.81; P<.001), support vector machine (AUC 0.77, 95% CI 0.73-0.80; P<.001), and the model for end-stage liver disease score (AUC 0.74, 95% CI 0.71-0.77; P<.001). Using a probability threshold of 0.25, the extreme gradient boosting model demonstrated a sensitivity of 72% (95% CI 0.67-0.77), specificity of 80% (95% CI 0.78-0.82), a positive predictive value of 48% (95% CI 43-53), and a negative predictive value of 92% (95% CI 90-94) in the testing set. Comparable performance was observed in the training dataset, with a sensitivity of 80% (95% CI 0.77-0.83), specificity of 81% (95% CI 0.80-0.82), and a negative predictive value of 94% at the same threshold. The most influential predictive variables identified by the model included serum ammonia, aspartate transaminase, alanine transaminase, prothrombin time, and serum potassium.ResultsA total of 5878 patients with cirrhosis were included in the analysis, of whom 1187 (20.2%) subsequently developed HE. Compared to the non-HE group, patients with HE were older (median age 55, IQR 46-65 vs median age 54, IQR 44-66 years; P=.04) and had higher rates of hepatitis B virus infection (351/1187, 30% vs 961/4691, 20.5%; P<.001), alcohol use (540/1187, 45.5% vs 1512/4691, 32.2%; P<.001), sepsis (393/1187, 33.1% vs 792/4691, 16.9%; P<.001), and mortality (425/1187, 35.8% vs 502/4691, 10.7%; P<.001), along with distinct laboratory abnormalities reflecting liver dysfunction. Among the ML algorithms evaluated, the extreme gradient boosting algorithm demonstrated the highest predictive accuracy, achieving an area under the curve (AUC) of 0.86 (95% CI 0.83-0.88) in the testing dataset. This performance was significantly superior to that of the neural network (AUC 0.79, 95% CI 0.76-0.81; P<.001), support vector machine (AUC 0.77, 95% CI 0.73-0.80; P<.001), and the model for end-stage liver disease score (AUC 0.74, 95% CI 0.71-0.77; P<.001). Using a probability threshold of 0.25, the extreme gradient boosting model demonstrated a sensitivity of 72% (95% CI 0.67-0.77), specificity of 80% (95% CI 0.78-0.82), a positive predictive value of 48% (95% CI 43-53), and a negative predictive value of 92% (95% CI 90-94) in the testing set. Comparable performance was observed in the training dataset, with a sensitivity of 80% (95% CI 0.77-0.83), specificity of 81% (95% CI 0.80-0.82), and a negative predictive value of 94% at the same threshold. The most influential predictive variables identified by the model included serum ammonia, aspartate transaminase, alanine transaminase, prothrombin time, and serum potassium.We developed a novel ML model for predicting HE in patients with noncancer-related cirrhosis. This model provides a practical guide to help physicians and these patients in shared decision-making regarding treatment strategy, with the ultimate goal of improving clinical care and reducing the burden of HE-related morbid complications.ConclusionsWe developed a novel ML model for predicting HE in patients with noncancer-related cirrhosis. This model provides a practical guide to help physicians and these patients in shared decision-making regarding treatment strategy, with the ultimate goal of improving clinical care and reducing the burden of HE-related morbid complications. Abstract BackgroundHepatic encephalopathy (HE) contributes significantly to mortality among patients with liver cirrhosis. Early prediction of HE is essential for clinical decision-making, yet remains challenging—particularly in noncancer-related cirrhosis due to the unpredictable disease course. ObjectiveThis study aimed to develop a novel machine learning (ML) model to improve early prediction of HE in patients with noncancer-related cirrhosis. MethodsA multicenter, retrospective cohort study was conducted from January 2010 to December 2017 across all Chang Gung Memorial Hospital branches in northern, middle, and southern Taiwan. We applied several ML models to evaluate HE predictability and compared their performance in the training dataset and testing dataset. Optimal sensitivity and specificity were determined using the Youden index. The best ML model was interpreted by the Shapley Additive Explanations plot. ResultsA total of 5878 patients with cirrhosis were included in the analysis, of whom 1187 (20.2%) subsequently developed HE. Compared to the non-HE group, patients with HE were older (median age 55, IQR 46‐65 vs median age 54, IQR 44‐66 years; PPPPPPPP ConclusionsWe developed a novel ML model for predicting HE in patients with noncancer-related cirrhosis. This model provides a practical guide to help physicians and these patients in shared decision-making regarding treatment strategy, with the ultimate goal of improving clinical care and reducing the burden of HE-related morbid complications. |
Author | Yeh, Wei-Chung Chen, Yi-Chuan Cheng, Yiu-Hua Tsai, Yi-Wen Chen, Hsin-Yu |
Author_xml | – sequence: 1 givenname: Hsin-Yu orcidid: 0009-0000-2544-2946 surname: Chen fullname: Chen, Hsin-Yu – sequence: 2 givenname: Yiu-Hua orcidid: 0009-0006-8740-4682 surname: Cheng fullname: Cheng, Yiu-Hua – sequence: 3 givenname: Wei-Chung orcidid: 0000-0001-9345-4121 surname: Yeh fullname: Yeh, Wei-Chung – sequence: 4 givenname: Yi-Chuan orcidid: 0000-0001-7471-6667 surname: Chen fullname: Chen, Yi-Chuan – sequence: 5 givenname: Yi-Wen orcidid: 0000-0002-8191-4036 surname: Tsai fullname: Tsai, Yi-Wen |
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Cites_doi | 10.1145/2939672.2939785 10.1111/liv.13620 10.1016/j.cmpb.2021.106420 10.1016/j.cld.2020.01.006 10.1016/S0016-5085(23)04120-3 10.15403/jgld-5876 10.1016/S2468-1253(19)30349-8 10.1111/apt.15749 10.18637/jss.v036.i11 10.1111/jgh.16645 10.1186/s12889-024-17948-6 10.1016/j.inffus.2021.11.011 10.14309/ajg.0000000000000762 10.1016/s0168-8278(00)80110-5 10.3748/wjg.v21.i41.11815 10.1016/j.jceh.2023.07.011 10.1016/S0016-5085(21)02602-0 10.1007/s11011-016-9862-6 10.1016/j.cgh.2022.04.036 10.1111/liv.15684 10.1097/MS9.0000000000000470 10.1186/1472-6947-12-8 10.4178/epih.e2018062 10.1080/14786440009463897 10.1016/s0168-8278(03)00267-8 10.1111/liv.14785 10.1016/j.cgh.2018.03.010 10.1053/he.2000.5852 10.3389/fmed.2023.1184860 10.1001/jama.278.2.89 10.1002/hep.29628 10.2307/3001968 10.18637/jss.v028.i05 10.1377/hlthaff.22.3.61 |
ContentType | Journal Article |
Copyright | Hsin-Yu Chen, Yiu-Hua Cheng, Wei-Chung Yeh, Yi-Chuan Chen, Yi-Wen Tsai. Originally published in JMIR Medical Informatics (https://medinform.jmir.org). Copyright © Hsin-Yu Chen, Yiu-Hua Cheng, Wei-Chung Yeh, Yi-Chuan Chen, Yi-Wen Tsai. Originally published in JMIR Medical Informatics (https://medinform.jmir.org) 2025 |
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Keywords | machine learning model noncancer-related liver diseases prognostication cirrhosis hepatic encephalopathy |
Language | English |
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Snippet | Hepatic encephalopathy (HE) contributes significantly to mortality among patients with liver cirrhosis. Early prediction of HE is essential for clinical... Abstract BackgroundHepatic encephalopathy (HE) contributes significantly to mortality among patients with liver cirrhosis. Early prediction of HE is essential... |
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SubjectTerms | Adult Aged Artificial Intelligence Clinical Information and Decision Making Decision Support for Health Professionals Female Gastroenterology and Hepatology Hepatic Encephalopathy - diagnosis Hepatic Encephalopathy - etiology Humans Liver Cirrhosis - complications Longitudinal Studies Machine Learning Male Middle Aged Original Paper Prognosis Retrospective Studies Taiwan - epidemiology |
Title | A Machine Learning–Based Prognostication Model Enhances Prediction of Early Hepatic Encephalopathy in Patients With Noncancer-Related Cirrhosis: Multicenter Longitudinal Cohort Study in Taiwan |
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