The transition to speciation in the finite genome Derrida–Higgs model: a heuristic solution
The process of speciation, where an ancestral species divides in two or more new species, involves several geographic, environmental and genetic components that interact in a complex way. Understanding all these elements at once is challenging and simple models can help in unveiling the role of each...
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Published in | Journal of physics. A, Mathematical and theoretical Vol. 58; no. 17; pp. 175601 - 175617 |
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Format | Journal Article |
Language | English |
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28.04.2025
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Abstract | The process of speciation, where an ancestral species divides in two or more new species, involves several geographic, environmental and genetic components that interact in a complex way. Understanding all these elements at once is challenging and simple models can help in unveiling the role of each factor separately. The Derrida–Higgs model describes the evolution of a sexually reproducing population subjected to mutations in a well mixed population. Individuals are characterized by a string with entries ±1 representing a haploid genome with biallelic genes. If mating is restricted by genetic similarity, so that only individuals that are sufficiently similar can mate, sympatric speciation, i.e. the emergence of species without geographic isolation, can occur. Only four parameters rule the dynamics: population size N , mutation rate µ , minimum similarity for mating q min and genome size B . In the limit B → ∞ , speciation occurs if the simple condition q min > ( 1 + 4 μ N ) − 1 is satisfied. However, this condition fails for finite genomes, and speciation does not occur if the genome size is too small. This indicates the existence of a critical genome size for speciation. In this work, we develop an analytical theory of the distribution of similarities between individuals, a quantity that defines how tight or spread out is the genetic content of the population. This theory is carried out in the absence of mating restrictions, where evolution equations for the mean and variance of the similarity distribution can be derived. We then propose a heuristic description of the speciation transition which allows us to numerically calculate the critical genome size for speciation as a function of the other model parameters. The result is in good agreement with the simulations of the model and may guide further investigations on theoretical conditions for species formation. |
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AbstractList | The process of speciation, where an ancestral species divides in two or more new species, involves several geographic, environmental and genetic components that interact in a complex way. Understanding all these elements at once is challenging and simple models can help in unveiling the role of each factor separately. The Derrida–Higgs model describes the evolution of a sexually reproducing population subjected to mutations in a well mixed population. Individuals are characterized by a string with entries ±1 representing a haploid genome with biallelic genes. If mating is restricted by genetic similarity, so that only individuals that are sufficiently similar can mate, sympatric speciation, i.e. the emergence of species without geographic isolation, can occur. Only four parameters rule the dynamics: population size N , mutation rate µ , minimum similarity for mating q min and genome size B . In the limit B → ∞ , speciation occurs if the simple condition q min > ( 1 + 4 μ N ) − 1 is satisfied. However, this condition fails for finite genomes, and speciation does not occur if the genome size is too small. This indicates the existence of a critical genome size for speciation. In this work, we develop an analytical theory of the distribution of similarities between individuals, a quantity that defines how tight or spread out is the genetic content of the population. This theory is carried out in the absence of mating restrictions, where evolution equations for the mean and variance of the similarity distribution can be derived. We then propose a heuristic description of the speciation transition which allows us to numerically calculate the critical genome size for speciation as a function of the other model parameters. The result is in good agreement with the simulations of the model and may guide further investigations on theoretical conditions for species formation. |
Author | Marquioni, Vitor M de Aguiar, Marcus A M |
Author_xml | – sequence: 1 givenname: Vitor M orcidid: 0000-0002-8904-0230 surname: Marquioni fullname: Marquioni, Vitor M organization: University of Campinas Institute of Physics Gleb Wataghin, Campinas, SP, Brazil – sequence: 2 givenname: Marcus A M orcidid: 0000-0003-1379-7568 surname: de Aguiar fullname: de Aguiar, Marcus A M organization: University of Campinas Institute of Physics Gleb Wataghin, Campinas, SP, Brazil |
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Cites_doi | 10.1002/evl3.78 10.1111/j.1420-9101.2008.01611.x 10.1038/s41559-022-01901-0 10.1111/evo.12674 10.1093/sysbio/syaa044 10.1016/S0169-5347(01)02177-2 10.1007/BF00171824 10.1093/nsr/nwac291 10.1088/0305-4470/24/17/005 10.1088/0305-4470/24/13/001 10.1046/j.1461-0248.1999.00082.x 10.1371/journal.pgen.1006157 10.1088/1751-8121/aa5701 10.1111/j.0014-3820.2003.tb00233.x 10.1088/0305-4470/27/21/022 10.1038/368629a0 10.1038/nature08168 10.1038/22521 10.1093/sysbio/syy049 10.1016/j.jtbi.2005.08.041 10.1098/rstb.2009.0271 10.1111/evo.14603 10.1038/nature04325 10.1146/annurev.ecolsys.38.091206.095804 10.1111/j.1365-294X.2004.02211.x 10.1111/j.1420-9101.2009.01816.x 10.1093/nsr/nwad006 |
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References | Sun (aadcd33bib8) 2022; 9 Princepe (aadcd33bib25) 2022; 76 Princepe (aadcd33bib27) 2021; 70 Gavrilets (aadcd33bib18) 2006; 239 Coyne (aadcd33bib1) 2004 Mallet (aadcd33bib7) 2009; 22 Schliewen (aadcd33bib12) 1994; 368 Dieckmann (aadcd33bib17) 1999; 400 De Aguiar (aadcd33bib21) 2017; 50 Bolnick (aadcd33bib3) 2007; 38 Kautt (aadcd33bib9) 2016; 12 Martin (aadcd33bib10) 2015; 69 Gavrilets (aadcd33bib4) 2003; 57 Martin (aadcd33bib5) 2022; 9 Fitzpatrick (aadcd33bib6) 2008; 21 Elmer (aadcd33bib16) 2010; 365 Seehausen (aadcd33bib13) 1999; 2 Barluenga (aadcd33bib15) 2006; 439 Higgs (aadcd33bib19) 1991; 24 Manzo (aadcd33bib24) 1994; 27 Princepe (aadcd33bib28) 2022; 6 Richards (aadcd33bib11) 2018; 2 Higgs (aadcd33bib20) 1992; 35 Barluenga (aadcd33bib14) 2004; 13 Costa (aadcd33bib23) 2019; 68 Turelli (aadcd33bib2) 2001; 16 De Aguiar (aadcd33bib22) 2009; 460 Serva (aadcd33bib26) 1991; 24 |
References_xml | – volume: 2 start-page: 524 year: 2018 ident: aadcd33bib11 article-title: Don’t throw out the sympatric speciation with the crater lake water: fine-scale investigation of introgression provides equivocal support for causal role of secondary gene flow in one of the clearest examples of sympatric speciation publication-title: Evol. Lett. doi: 10.1002/evl3.78 – volume: 21 start-page: 1452 year: 2008 ident: aadcd33bib6 article-title: What, if anything, is sympatric speciation? publication-title: J. Evol. Biol. doi: 10.1111/j.1420-9101.2008.01611.x – volume: 6 start-page: 1992 year: 2022 ident: aadcd33bib28 article-title: Mito-nuclear selection induces a trade-off between species ecological dominance and evolutionary lifespan publication-title: Nat. Ecol. Evol. doi: 10.1038/s41559-022-01901-0 – volume: 69 start-page: 1406 year: 2015 ident: aadcd33bib10 article-title: Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation publication-title: Evolution doi: 10.1111/evo.12674 – volume: 70 start-page: 133 year: 2021 ident: aadcd33bib27 article-title: Modeling mito-nuclear compatibility and its role in species identification publication-title: Syst. Biol. doi: 10.1093/sysbio/syaa044 – volume: 16 start-page: 330 year: 2001 ident: aadcd33bib2 article-title: Theory and speciation publication-title: Trends Ecol. Evol. doi: 10.1016/S0169-5347(01)02177-2 – volume: 35 start-page: 454 year: 1992 ident: aadcd33bib20 article-title: Genetic distance and species formation in evolving populations publication-title: J. Mol. Evol. doi: 10.1007/BF00171824 – volume: 9 start-page: nwac291 year: 2022 ident: aadcd33bib8 article-title: Sympatric or micro-allopatric speciation in a glacial lake? Genomic islands support neither publication-title: Natl Sci. Rev. doi: 10.1093/nsr/nwac291 – volume: 24 start-page: L985 year: 1991 ident: aadcd33bib19 article-title: Stochastic models for species formation in evolving populations publication-title: J. Phys. A: Math. Gen. doi: 10.1088/0305-4470/24/17/005 – volume: 24 start-page: L705 year: 1991 ident: aadcd33bib26 article-title: A statistical model of an evolving population with sexual reproduction publication-title: J. Phys. A: Math. Gen. doi: 10.1088/0305-4470/24/13/001 – volume: 2 start-page: 262 year: 1999 ident: aadcd33bib13 article-title: Can sympatric speciation by disruptive sexual selection explain rapid evolution of cichlid diversity in Lake Victoria? publication-title: Ecol. Lett. doi: 10.1046/j.1461-0248.1999.00082.x – volume: 12 year: 2016 ident: aadcd33bib9 article-title: Multispecies outcomes of sympatric speciation after admixture with the source population in two radiations of Nicaraguan crater lake cichlids publication-title: PLoS Genet. doi: 10.1371/journal.pgen.1006157 – volume: 50 year: 2017 ident: aadcd33bib21 article-title: Speciation in the Derrida–Higgs model with finite genomes and spatial populations publication-title: J. Phys. A: Math. Theor. doi: 10.1088/1751-8121/aa5701 – volume: 57 start-page: 2197 year: 2003 ident: aadcd33bib4 article-title: Perspective: models of speciation: what have we learned in 40 years? publication-title: Evolution doi: 10.1111/j.0014-3820.2003.tb00233.x – year: 2004 ident: aadcd33bib1 article-title: Speciation – volume: 27 start-page: 7079 year: 1994 ident: aadcd33bib24 article-title: Geographic speciation in the Derrida-Higgs model of species formation publication-title: J. Phys. A: Math. Gen. doi: 10.1088/0305-4470/27/21/022 – volume: 368 start-page: 629 year: 1994 ident: aadcd33bib12 article-title: Sympatric speciation suggested by monophyly of crater lake cichlids publication-title: Nature doi: 10.1038/368629a0 – volume: 460 start-page: 384 year: 2009 ident: aadcd33bib22 article-title: Global patterns of speciation and diversity publication-title: Nature doi: 10.1038/nature08168 – volume: 400 start-page: 354 year: 1999 ident: aadcd33bib17 article-title: On the origin of species by sympatric speciation publication-title: Nature doi: 10.1038/22521 – volume: 68 start-page: 131 year: 2019 ident: aadcd33bib23 article-title: Signatures of microevolutionary processes in phylogenetic patterns publication-title: Syst. Biol. doi: 10.1093/sysbio/syy049 – volume: 239 start-page: 172 year: 2006 ident: aadcd33bib18 article-title: The Maynard Smith model of sympatric speciation publication-title: J. Theor. Biol. doi: 10.1016/j.jtbi.2005.08.041 – volume: 365 start-page: 1763 year: 2010 ident: aadcd33bib16 article-title: Local variation and parallel evolution: morphological and genetic diversity across a species complex of neotropical crater lake cichlid fishes publication-title: Phil. Trans. R. Soc. B doi: 10.1098/rstb.2009.0271 – volume: 76 start-page: 2260 year: 2022 ident: aadcd33bib25 article-title: Diversity patterns and speciation processes in a two-island system with continuous migration publication-title: Evolution doi: 10.1111/evo.14603 – volume: 439 start-page: 719 year: 2006 ident: aadcd33bib15 article-title: Sympatric speciation in Nicaraguan crater lake cichlid fish publication-title: Nature doi: 10.1038/nature04325 – volume: 38 start-page: 459 year: 2007 ident: aadcd33bib3 article-title: Sympatric speciation: models and empirical evidence publication-title: Annu. Rev. Ecol. Evol. Syst. doi: 10.1146/annurev.ecolsys.38.091206.095804 – volume: 13 start-page: 2061 year: 2004 ident: aadcd33bib14 article-title: The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes? publication-title: Mol. Ecol. doi: 10.1111/j.1365-294X.2004.02211.x – volume: 22 start-page: 2332 year: 2009 ident: aadcd33bib7 article-title: Space, sympatry and speciation publication-title: J. Evol. Biol. doi: 10.1111/j.1420-9101.2009.01816.x – volume: 9 start-page: nwad006 year: 2022 ident: aadcd33bib5 article-title: Is sympatric speciation in nature only possible with micro-parapatry? A new case study of glacial lake cyprinid fishes publication-title: Natl Sci. Rev. doi: 10.1093/nsr/nwad006 |
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SubjectTerms | individual based model population dynamics stochastic process Sympatric speciation |
Title | The transition to speciation in the finite genome Derrida–Higgs model: a heuristic solution |
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