The transition to speciation in the finite genome Derrida–Higgs model: a heuristic solution

The process of speciation, where an ancestral species divides in two or more new species, involves several geographic, environmental and genetic components that interact in a complex way. Understanding all these elements at once is challenging and simple models can help in unveiling the role of each...

Full description

Saved in:
Bibliographic Details
Published inJournal of physics. A, Mathematical and theoretical Vol. 58; no. 17; pp. 175601 - 175617
Main Authors Marquioni, Vitor M, de Aguiar, Marcus A M
Format Journal Article
LanguageEnglish
Published IOP Publishing 28.04.2025
Subjects
Online AccessGet full text

Cover

Loading…
Abstract The process of speciation, where an ancestral species divides in two or more new species, involves several geographic, environmental and genetic components that interact in a complex way. Understanding all these elements at once is challenging and simple models can help in unveiling the role of each factor separately. The Derrida–Higgs model describes the evolution of a sexually reproducing population subjected to mutations in a well mixed population. Individuals are characterized by a string with entries ±1 representing a haploid genome with biallelic genes. If mating is restricted by genetic similarity, so that only individuals that are sufficiently similar can mate, sympatric speciation, i.e. the emergence of species without geographic isolation, can occur. Only four parameters rule the dynamics: population size N , mutation rate µ , minimum similarity for mating q min and genome size B . In the limit B → ∞ , speciation occurs if the simple condition q min > ( 1 + 4 μ N ) − 1 is satisfied. However, this condition fails for finite genomes, and speciation does not occur if the genome size is too small. This indicates the existence of a critical genome size for speciation. In this work, we develop an analytical theory of the distribution of similarities between individuals, a quantity that defines how tight or spread out is the genetic content of the population. This theory is carried out in the absence of mating restrictions, where evolution equations for the mean and variance of the similarity distribution can be derived. We then propose a heuristic description of the speciation transition which allows us to numerically calculate the critical genome size for speciation as a function of the other model parameters. The result is in good agreement with the simulations of the model and may guide further investigations on theoretical conditions for species formation.
AbstractList The process of speciation, where an ancestral species divides in two or more new species, involves several geographic, environmental and genetic components that interact in a complex way. Understanding all these elements at once is challenging and simple models can help in unveiling the role of each factor separately. The Derrida–Higgs model describes the evolution of a sexually reproducing population subjected to mutations in a well mixed population. Individuals are characterized by a string with entries ±1 representing a haploid genome with biallelic genes. If mating is restricted by genetic similarity, so that only individuals that are sufficiently similar can mate, sympatric speciation, i.e. the emergence of species without geographic isolation, can occur. Only four parameters rule the dynamics: population size N , mutation rate µ , minimum similarity for mating q min and genome size B . In the limit B → ∞ , speciation occurs if the simple condition q min > ( 1 + 4 μ N ) − 1 is satisfied. However, this condition fails for finite genomes, and speciation does not occur if the genome size is too small. This indicates the existence of a critical genome size for speciation. In this work, we develop an analytical theory of the distribution of similarities between individuals, a quantity that defines how tight or spread out is the genetic content of the population. This theory is carried out in the absence of mating restrictions, where evolution equations for the mean and variance of the similarity distribution can be derived. We then propose a heuristic description of the speciation transition which allows us to numerically calculate the critical genome size for speciation as a function of the other model parameters. The result is in good agreement with the simulations of the model and may guide further investigations on theoretical conditions for species formation.
Author Marquioni, Vitor M
de Aguiar, Marcus A M
Author_xml – sequence: 1
  givenname: Vitor M
  orcidid: 0000-0002-8904-0230
  surname: Marquioni
  fullname: Marquioni, Vitor M
  organization: University of Campinas Institute of Physics Gleb Wataghin, Campinas, SP, Brazil
– sequence: 2
  givenname: Marcus A M
  orcidid: 0000-0003-1379-7568
  surname: de Aguiar
  fullname: de Aguiar, Marcus A M
  organization: University of Campinas Institute of Physics Gleb Wataghin, Campinas, SP, Brazil
BookMark eNp1UMtOwzAQtFCRaAt3jv4AQv0grcMNlUeRKnHJFVkbe5O6au3KTg7c-Af-kC8hoag3Trs7uzPamQkZ-eCRkGvObjlTasYXOc8UF3wG1lgpz8j4BI1OPZcXZJLSlrH8jhViTN7LDdI2gk-udcHTNtB0QOPgd3I90O9r512LtEEf9kgfMUZn4fvza-WaJtF9sLi7p0A32EWXWmdoCrtuELgk5zXsEl791Skpn5_K5Spbv728Lh_WmREyb7Nc2aJSFbNMGgOLOcfcGqiZ5XPJeKXQQFUwZZALIyxYCygWRVX1xkFYI6eEHWVNDClFrPUhuj3ED82ZHtLRg309RKGP6fSUmyPFhYPehi76_r__z38ALRZrtg
CODEN JPHAC5
Cites_doi 10.1002/evl3.78
10.1111/j.1420-9101.2008.01611.x
10.1038/s41559-022-01901-0
10.1111/evo.12674
10.1093/sysbio/syaa044
10.1016/S0169-5347(01)02177-2
10.1007/BF00171824
10.1093/nsr/nwac291
10.1088/0305-4470/24/17/005
10.1088/0305-4470/24/13/001
10.1046/j.1461-0248.1999.00082.x
10.1371/journal.pgen.1006157
10.1088/1751-8121/aa5701
10.1111/j.0014-3820.2003.tb00233.x
10.1088/0305-4470/27/21/022
10.1038/368629a0
10.1038/nature08168
10.1038/22521
10.1093/sysbio/syy049
10.1016/j.jtbi.2005.08.041
10.1098/rstb.2009.0271
10.1111/evo.14603
10.1038/nature04325
10.1146/annurev.ecolsys.38.091206.095804
10.1111/j.1365-294X.2004.02211.x
10.1111/j.1420-9101.2009.01816.x
10.1093/nsr/nwad006
ContentType Journal Article
Copyright 2025 IOP Publishing Ltd. All rights, including for text and data mining, AI training, and similar technologies, are reserved.
Copyright_xml – notice: 2025 IOP Publishing Ltd. All rights, including for text and data mining, AI training, and similar technologies, are reserved.
DBID AAYXX
CITATION
DOI 10.1088/1751-8121/adcd33
DatabaseName CrossRef
DatabaseTitle CrossRef
DatabaseTitleList CrossRef
DeliveryMethod fulltext_linktorsrc
Discipline Physics
EISSN 1751-8121
ExternalDocumentID 10_1088_1751_8121_adcd33
aadcd33
GrantInformation_xml – fundername: Conselho Nacional de Desenvolvimento Científico e Tecnológico
  grantid: 140728/2019-8
  funderid: http://dx.doi.org/10.13039/501100003593
– fundername: Fundação de Amparo à Pesquisa do Estado de São Paulo
  grantid: 2019/13341-7; 2021/12509-1
  funderid: http://dx.doi.org/10.13039/501100001807
GroupedDBID 1JI
4.4
5B3
5GY
5VS
5ZH
7.M
7.Q
AAGCD
AAGID
AAJIO
AAJKP
AATNI
ABCXL
ABHWH
ABQJV
ABVAM
ACAFW
ACGFS
ACHIP
ACNCT
AEFHF
AFYNE
AKPSB
ALMA_UNASSIGNED_HOLDINGS
AOAED
ASPBG
ATQHT
AVWKF
AZFZN
CBCFC
CEBXE
CJUJL
CRLBU
CS3
EBS
EDWGO
EMSAF
EPQRW
EQZZN
IHE
IJHAN
IOP
IZVLO
KOT
LAP
N5L
PJBAE
RIN
RNS
RO9
ROL
RPA
SY9
TN5
W28
AAYXX
ADEQX
CITATION
ID FETCH-LOGICAL-c235t-58d9b8b0d03cca761e5dcaf0d16301b8ecab908ce12c2daddae279bb108a2dc3
IEDL.DBID IOP
ISSN 1751-8113
IngestDate Tue Jul 01 05:04:16 EDT 2025
Tue Apr 29 23:13:49 EDT 2025
IsPeerReviewed true
IsScholarly true
Issue 17
Language English
License This article is available under the terms of the IOP-Standard License.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c235t-58d9b8b0d03cca761e5dcaf0d16301b8ecab908ce12c2daddae279bb108a2dc3
Notes JPhysA-121951.R2
ORCID 0000-0002-8904-0230
0000-0003-1379-7568
PageCount 17
ParticipantIDs iop_journals_10_1088_1751_8121_adcd33
crossref_primary_10_1088_1751_8121_adcd33
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2025-04-28
PublicationDateYYYYMMDD 2025-04-28
PublicationDate_xml – month: 04
  year: 2025
  text: 2025-04-28
  day: 28
PublicationDecade 2020
PublicationTitle Journal of physics. A, Mathematical and theoretical
PublicationTitleAbbrev JPhysA
PublicationTitleAlternate J. Phys. A: Math. Theor
PublicationYear 2025
Publisher IOP Publishing
Publisher_xml – name: IOP Publishing
References Sun (aadcd33bib8) 2022; 9
Princepe (aadcd33bib25) 2022; 76
Princepe (aadcd33bib27) 2021; 70
Gavrilets (aadcd33bib18) 2006; 239
Coyne (aadcd33bib1) 2004
Mallet (aadcd33bib7) 2009; 22
Schliewen (aadcd33bib12) 1994; 368
Dieckmann (aadcd33bib17) 1999; 400
De Aguiar (aadcd33bib21) 2017; 50
Bolnick (aadcd33bib3) 2007; 38
Kautt (aadcd33bib9) 2016; 12
Martin (aadcd33bib10) 2015; 69
Gavrilets (aadcd33bib4) 2003; 57
Martin (aadcd33bib5) 2022; 9
Fitzpatrick (aadcd33bib6) 2008; 21
Elmer (aadcd33bib16) 2010; 365
Seehausen (aadcd33bib13) 1999; 2
Barluenga (aadcd33bib15) 2006; 439
Higgs (aadcd33bib19) 1991; 24
Manzo (aadcd33bib24) 1994; 27
Princepe (aadcd33bib28) 2022; 6
Richards (aadcd33bib11) 2018; 2
Higgs (aadcd33bib20) 1992; 35
Barluenga (aadcd33bib14) 2004; 13
Costa (aadcd33bib23) 2019; 68
Turelli (aadcd33bib2) 2001; 16
De Aguiar (aadcd33bib22) 2009; 460
Serva (aadcd33bib26) 1991; 24
References_xml – volume: 2
  start-page: 524
  year: 2018
  ident: aadcd33bib11
  article-title: Don’t throw out the sympatric speciation with the crater lake water: fine-scale investigation of introgression provides equivocal support for causal role of secondary gene flow in one of the clearest examples of sympatric speciation
  publication-title: Evol. Lett.
  doi: 10.1002/evl3.78
– volume: 21
  start-page: 1452
  year: 2008
  ident: aadcd33bib6
  article-title: What, if anything, is sympatric speciation?
  publication-title: J. Evol. Biol.
  doi: 10.1111/j.1420-9101.2008.01611.x
– volume: 6
  start-page: 1992
  year: 2022
  ident: aadcd33bib28
  article-title: Mito-nuclear selection induces a trade-off between species ecological dominance and evolutionary lifespan
  publication-title: Nat. Ecol. Evol.
  doi: 10.1038/s41559-022-01901-0
– volume: 69
  start-page: 1406
  year: 2015
  ident: aadcd33bib10
  article-title: Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation
  publication-title: Evolution
  doi: 10.1111/evo.12674
– volume: 70
  start-page: 133
  year: 2021
  ident: aadcd33bib27
  article-title: Modeling mito-nuclear compatibility and its role in species identification
  publication-title: Syst. Biol.
  doi: 10.1093/sysbio/syaa044
– volume: 16
  start-page: 330
  year: 2001
  ident: aadcd33bib2
  article-title: Theory and speciation
  publication-title: Trends Ecol. Evol.
  doi: 10.1016/S0169-5347(01)02177-2
– volume: 35
  start-page: 454
  year: 1992
  ident: aadcd33bib20
  article-title: Genetic distance and species formation in evolving populations
  publication-title: J. Mol. Evol.
  doi: 10.1007/BF00171824
– volume: 9
  start-page: nwac291
  year: 2022
  ident: aadcd33bib8
  article-title: Sympatric or micro-allopatric speciation in a glacial lake? Genomic islands support neither
  publication-title: Natl Sci. Rev.
  doi: 10.1093/nsr/nwac291
– volume: 24
  start-page: L985
  year: 1991
  ident: aadcd33bib19
  article-title: Stochastic models for species formation in evolving populations
  publication-title: J. Phys. A: Math. Gen.
  doi: 10.1088/0305-4470/24/17/005
– volume: 24
  start-page: L705
  year: 1991
  ident: aadcd33bib26
  article-title: A statistical model of an evolving population with sexual reproduction
  publication-title: J. Phys. A: Math. Gen.
  doi: 10.1088/0305-4470/24/13/001
– volume: 2
  start-page: 262
  year: 1999
  ident: aadcd33bib13
  article-title: Can sympatric speciation by disruptive sexual selection explain rapid evolution of cichlid diversity in Lake Victoria?
  publication-title: Ecol. Lett.
  doi: 10.1046/j.1461-0248.1999.00082.x
– volume: 12
  year: 2016
  ident: aadcd33bib9
  article-title: Multispecies outcomes of sympatric speciation after admixture with the source population in two radiations of Nicaraguan crater lake cichlids
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1006157
– volume: 50
  year: 2017
  ident: aadcd33bib21
  article-title: Speciation in the Derrida–Higgs model with finite genomes and spatial populations
  publication-title: J. Phys. A: Math. Theor.
  doi: 10.1088/1751-8121/aa5701
– volume: 57
  start-page: 2197
  year: 2003
  ident: aadcd33bib4
  article-title: Perspective: models of speciation: what have we learned in 40 years?
  publication-title: Evolution
  doi: 10.1111/j.0014-3820.2003.tb00233.x
– year: 2004
  ident: aadcd33bib1
  article-title: Speciation
– volume: 27
  start-page: 7079
  year: 1994
  ident: aadcd33bib24
  article-title: Geographic speciation in the Derrida-Higgs model of species formation
  publication-title: J. Phys. A: Math. Gen.
  doi: 10.1088/0305-4470/27/21/022
– volume: 368
  start-page: 629
  year: 1994
  ident: aadcd33bib12
  article-title: Sympatric speciation suggested by monophyly of crater lake cichlids
  publication-title: Nature
  doi: 10.1038/368629a0
– volume: 460
  start-page: 384
  year: 2009
  ident: aadcd33bib22
  article-title: Global patterns of speciation and diversity
  publication-title: Nature
  doi: 10.1038/nature08168
– volume: 400
  start-page: 354
  year: 1999
  ident: aadcd33bib17
  article-title: On the origin of species by sympatric speciation
  publication-title: Nature
  doi: 10.1038/22521
– volume: 68
  start-page: 131
  year: 2019
  ident: aadcd33bib23
  article-title: Signatures of microevolutionary processes in phylogenetic patterns
  publication-title: Syst. Biol.
  doi: 10.1093/sysbio/syy049
– volume: 239
  start-page: 172
  year: 2006
  ident: aadcd33bib18
  article-title: The Maynard Smith model of sympatric speciation
  publication-title: J. Theor. Biol.
  doi: 10.1016/j.jtbi.2005.08.041
– volume: 365
  start-page: 1763
  year: 2010
  ident: aadcd33bib16
  article-title: Local variation and parallel evolution: morphological and genetic diversity across a species complex of neotropical crater lake cichlid fishes
  publication-title: Phil. Trans. R. Soc. B
  doi: 10.1098/rstb.2009.0271
– volume: 76
  start-page: 2260
  year: 2022
  ident: aadcd33bib25
  article-title: Diversity patterns and speciation processes in a two-island system with continuous migration
  publication-title: Evolution
  doi: 10.1111/evo.14603
– volume: 439
  start-page: 719
  year: 2006
  ident: aadcd33bib15
  article-title: Sympatric speciation in Nicaraguan crater lake cichlid fish
  publication-title: Nature
  doi: 10.1038/nature04325
– volume: 38
  start-page: 459
  year: 2007
  ident: aadcd33bib3
  article-title: Sympatric speciation: models and empirical evidence
  publication-title: Annu. Rev. Ecol. Evol. Syst.
  doi: 10.1146/annurev.ecolsys.38.091206.095804
– volume: 13
  start-page: 2061
  year: 2004
  ident: aadcd33bib14
  article-title: The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes?
  publication-title: Mol. Ecol.
  doi: 10.1111/j.1365-294X.2004.02211.x
– volume: 22
  start-page: 2332
  year: 2009
  ident: aadcd33bib7
  article-title: Space, sympatry and speciation
  publication-title: J. Evol. Biol.
  doi: 10.1111/j.1420-9101.2009.01816.x
– volume: 9
  start-page: nwad006
  year: 2022
  ident: aadcd33bib5
  article-title: Is sympatric speciation in nature only possible with micro-parapatry? A new case study of glacial lake cyprinid fishes
  publication-title: Natl Sci. Rev.
  doi: 10.1093/nsr/nwad006
SSID ssj0054092
Score 2.453624
Snippet The process of speciation, where an ancestral species divides in two or more new species, involves several geographic, environmental and genetic components...
SourceID crossref
iop
SourceType Index Database
Publisher
StartPage 175601
SubjectTerms individual based model
population dynamics
stochastic process
Sympatric speciation
Title The transition to speciation in the finite genome Derrida–Higgs model: a heuristic solution
URI https://iopscience.iop.org/article/10.1088/1751-8121/adcd33
Volume 58
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV05T8MwFLbaIiQWbkS55AEGBrdOnMOBCQFVxQAMReoAinxFVIi2IunCxH_gH_JLeHYSBAgkxJbjKXE-O-99ybsQ2vdiAR9WTBIW6YgEmmZEelKRgAtFTZxYb5-NtriM-jfBxTAcNtDxRy7MZFqp_g5sloWCSwirgDjeBYPnEbBLXldopRlrojnGwXDa7L2r61oNAxNxHZEraY9VPsqfrvDFJjXhvp9MTG8J3daDKyNLHjqzQnbU87e6jf8c_TJarKgnPilFV1DDjFfRvAsBVfkauoMVgwtrulwUFy4mOHfN6d3eCA7A-WxkOSq2lV0fDT6zZR21eHt5tX-uc-za6hxhge_NrKwAjeulvY4GvfPBaZ9UzReI8llYkJDrRHJJNWUwyXHkmVArkVENBI56khslZEK5Mp6vfA1aUhg_TqSEhxS-VmwDtcaTsdm0WeFRlgFtkAwmXiklI66oAj0iQblFmWmjwxr9dFqW2Eida5zz1KKVWrTSEq02OgBg0-o9y3-V2_qj3DZa8G1DXxoQn--gVvE0M7vAMgq551bTO3TBzXk
linkProvider IOP Publishing
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V3JTsMwEB2xCMSFHbHjAxw4uHXsJnWROCBKxSbgABIXFHmLQIi2oqkQnPgH_oNf4R_4EsZJigCBxIUDtyixkrFnPEv8ZgZgNagqDKyEpiKyEa1YllAdaEMrUhnmqjV_2ufRFkfR7lll_zw874Pn91yYVrtQ_SW8zAsF50tYAOJkGQ1eQNEuBWVljRWi3LZJgao8cPd3GLN1NvfqyOA1zhs7p9u7tGgrQA0XYUpDaWtaamaZQPIxjHehNSphFl0TFmjpjNI1Jo0LuOEW979yvFrTGj-uuDUCX9sPg6FAU-0TBo9PepofnZ-sCXNBYCCKY9HviP5kBvtxqh-sWmMMXnrrkYNZrkvdVJfMw5dSkf9nwcZhtHCwyVZO3QT0ueYkDGVAV9OZggvcFyT1BjrDqpG0RXyyaS6g5Apv4PPkynvixNevvXGk7otXWvX6-OT_z3dI1jxogyhy6bp5nWvS28DTcPoXU5uBgWar6WZ97nuUJOgcaYHibYzRkTTMoLbUqMKjxM3Beo_hcTsvJBJnAAApY8-g2DMozhk0B2vIy7jQJp0fx83_ctwKDJ_UG_Hh3tHBAoxw38GYVSiXizCQ3nbdErpVqV7OZJlA_Mei8AZE1zA2
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=The+transition+to+speciation+in+the+finite+genome+Derrida%E2%80%93Higgs+model%3A+a+heuristic+solution&rft.jtitle=Journal+of+physics.+A%2C+Mathematical+and+theoretical&rft.au=Marquioni%2C+Vitor+M&rft.au=de+Aguiar%2C+Marcus+A+M&rft.date=2025-04-28&rft.pub=IOP+Publishing&rft.issn=1751-8113&rft.eissn=1751-8121&rft.volume=58&rft.issue=17&rft_id=info:doi/10.1088%2F1751-8121%2Fadcd33&rft.externalDocID=aadcd33
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1751-8113&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1751-8113&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1751-8113&client=summon