QTL-BSA: A Bulked Segregant Analysis and Visualization Pipeline for QTL-seq
Saved in:
Published in | Interdisciplinary sciences : computational life sciences Vol. 11; no. 4; pp. 730 - 737 |
---|---|
Main Authors | , , |
Format | Journal Article |
Language | English Japanese |
Published |
01.12.2019
|
Online Access | Get full text |
ISSN | 1913-2751 1867-1462 |
DOI | 10.1007/s12539-019-00344-9 |
Cover
Loading…
Author | Qiu, Jie Wu, Sanling Gao, Qikang |
---|---|
Author_xml | – sequence: 1 givenname: Sanling orcidid: 0000-0001-7734-6542 surname: Wu fullname: Wu, Sanling – sequence: 2 givenname: Jie surname: Qiu fullname: Qiu, Jie – sequence: 3 givenname: Qikang surname: Gao fullname: Gao, Qikang |
BookMark | eNp9kM1OAjEUhRuDiYC-gKu-QPX2Zzqtu4H4F0nUgG6bMrSkOnawHRb49A7iyoWLm3M330nON0KD2EaH0DmFCwpQXmbKCq4J0P6AC0H0ERpSJUtChWSD_teUE1YW9ASNcn4DkEJxGKKH58WMTObVFa7wZNu8uxWeu3Vyaxs7XEXb7HLI2MYVfg15a5vwZbvQRvwUNq4J0WHfJrzvyO7zFB1722R39ptj9HJzvZjekdnj7f20mpGaMdURISWj1GvPaEGBLZdKW6EVSAul0LAsbOl4rcpi5SSTXloKqoZCeV5rVXjFx4gdeuvU5pycN5sUPmzaGQpmr8McdJheh_nRYXQPqT9QHbqfLV2yofkP_QaEoWRW |
CitedBy_id | crossref_primary_10_1016_j_jia_2024_02_005 crossref_primary_10_3389_fpls_2021_809959 crossref_primary_10_3389_fpls_2023_1042913 crossref_primary_10_3390_plants12030559 crossref_primary_10_3390_ijms21062162 crossref_primary_10_1038_s41598_021_91101_w crossref_primary_10_1080_1343943X_2021_1927766 crossref_primary_10_3390_agronomy12040790 crossref_primary_10_17221_36_2021_CJGPB crossref_primary_10_3390_ijms23052405 crossref_primary_10_1007_s10681_021_02964_z crossref_primary_10_1016_j_csbj_2022_05_009 |
Cites_doi | 10.1007/BF00224031 10.1016/j.fcr.2008.11.006 10.1093/genetics/137.1.289 10.1186/s12864-017-3511-2 10.1038/nbt.1754 10.2298/GENSR1302341N 10.1007/s10681-014-1243-9 10.1007/s12284-010-9041-z 10.1371/journal.pone.0075402 10.1186/1471-2229-9-120 10.1371/journal.pone.0122206 10.1038/nature01434 10.1007/s00122-007-0688-9 10.1007/s11032-011-9594-6 10.1101/gr.107524.110 10.1093/dnares/dsv004 10.1534/genetics.105.044586 10.1007/s00122-003-1270-8 10.1007/s00122-007-0692-0 10.1111/tpj.12105 10.1093/bioinformatics/btp352 10.1038/nbt.2095 10.1023/A:1024681422799 10.1093/bioinformatics/btp324 10.1126/science.1113373 10.1016/j.tplants.2006.05.008 10.2135/cropsci2007.04.0205 10.1007/s00122-006-0207-4 10.1186/gb-2009-10-3-r25 10.1270/jsbbs.59.645 10.1126/science.1126410 10.1007/s12284-010-9044-9 10.1007/s11032-005-0998-z 10.1023/A:1020872009306 10.1007/s00299-015-1745-5 10.1093/database/bap005 10.1007/s00122-014-2313-z 10.1007/s00299-006-0138-1 10.1007/s11032-013-9843-y 10.1007/s12539-016-0152-0 10.1186/1939-8433-6-33 10.1093/bib/bbs017 10.1093/bib/bbs012 10.1016/S1672-6308(12)60004-3 |
ContentType | Journal Article |
DBID | AAYXX CITATION |
DOI | 10.1007/s12539-019-00344-9 |
DatabaseName | CrossRef |
DatabaseTitle | CrossRef |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Biology |
EISSN | 1867-1462 |
EndPage | 737 |
ExternalDocumentID | 10_1007_s12539_019_00344_9 |
GroupedDBID | --- 06C 06D 0R~ 0VY 1N0 29~ 2KG 2VQ 2~H 30V 4.4 406 408 409 40D 40E 53G 67N 6NX 7X2 7X7 7XC 88E 8CJ 8FE 8FG 8FH 8FI 8FJ 96X AACDK AAHNG AAIAL AAJBT AAJKR AANXM AANZL AAPKM AARHV AARTL AASML AATNV AATVU AAUYE AAWCG AAYIU AAYQN AAYTO AAYXX AAYZH AAZMS ABAKF ABBRH ABBXA ABDBE ABDZT ABECU ABFTV ABHQN ABJNI ABJOX ABKCH ABMQK ABQBU ABSXP ABTEG ABTHY ABTKH ABTMW ABUWG ABWNU ABXPI ACAOD ACDTI ACGFS ACHSB ACIWK ACKNC ACMDZ ACMLO ACOKC ACOMO ACPIV ACPRK ACZOJ ADBBV ADHHG ADHIR ADKNI ADRFC ADURQ ADYFF ADZKW AEBTG AEFQL AEGNC AEJHL AEJRE AEMSY AEOHA AEPYU AESKC AEUYN AEVLU AEXYK AFDZB AFKRA AFLOW AFOHR AFQWF AFRAH AFWTZ AFZKB AGAYW AGDGC AGJBK AGMZJ AGQEE AGQMX AGRTI AGWZB AGYKE AHAVH AHBYD AHKAY AHMBA AHPBZ AHSBF AHYZX AIAKS AIGIU AIIXL AILAN AITGF AJBLW AJRNO AJZVZ ALFXC ALIPV ALMA_UNASSIGNED_HOLDINGS AMKLP AMXSW AMYLF AMYQR ANMIH AOCGG APEBS ARAPS ASPBG ATCPS ATHPR AUKKA AVWKF AXYYD AYFIA AZFZN BA0 BBNVY BENPR BGLVJ BGNMA BHPHI BKSAR BPHCQ BVXVI CAG CCPQU CITATION COF D1J D1K DDRTE DNIVK DPUIP EBD EBLON EBS EIOEI EJD EMOBN ESBYG F5P FERAY FFXSO FIGPU FINBP FNLPD FRRFC FSGXE FYJPI FYUFA G-Y G-Z GGCAI GGRSB GJIRD GQ7 GQ8 GXS H13 HCIFZ HF~ HG6 HLICF HMCUK HMJXF HQYDN HRMNR HZ~ I0C IJ- IKXTQ IWAJR IZIGR I~X J-C JBSCW JCJTX JZLTJ K6- KOV LK5 LK8 LLZTM M0K M1P M4Y M7P M7R NPVJJ NQJWS NU0 O9- O9J P62 PATMY PCBAR PHGZM PHGZT PQQKQ PROAC PSQYO PT4 PYCSY Q2X QOR QOS R89 RLLFE ROL RSV S1Z S27 S3A S3B SBL SCL SDH SHX SJYHP SNE SNPRN SNX SOHCF SOJ SPISZ SRMVM SSLCW STPWE SV3 T13 TSG U2A U9L UG4 UKHRP UOJIU UTJUX UZXMN VC2 VFIZW W48 WK8 ZMTXR ZOVNA ~A9 |
ID | FETCH-LOGICAL-c228t-466211f9f215102bb89a49806a07490b5a7e3c875de626f6a108c058f3c985f83 |
ISSN | 1913-2751 |
IngestDate | Thu Apr 24 22:53:16 EDT 2025 Tue Jul 01 02:19:18 EDT 2025 |
IsPeerReviewed | false |
IsScholarly | true |
Issue | 4 |
Language | English Japanese |
LinkModel | OpenURL |
MergedId | FETCHMERGED-LOGICAL-c228t-466211f9f215102bb89a49806a07490b5a7e3c875de626f6a108c058f3c985f83 |
ORCID | 0000-0001-7734-6542 |
PageCount | 8 |
ParticipantIDs | crossref_primary_10_1007_s12539_019_00344_9 crossref_citationtrail_10_1007_s12539_019_00344_9 |
ProviderPackageCode | CITATION AAYXX |
PublicationCentury | 2000 |
PublicationDate | 2019-12-01 |
PublicationDateYYYYMMDD | 2019-12-01 |
PublicationDate_xml | – month: 12 year: 2019 text: 2019-12-01 day: 01 |
PublicationDecade | 2010 |
PublicationTitle | Interdisciplinary sciences : computational life sciences |
PublicationYear | 2019 |
References | MJ Thomson (344_CR8) 2003; 107 H Li (344_CR32) 2009; 25 T Shehzad (344_CR18) 2015; 203 I Milne (344_CR38) 2013; 14 T Helga (344_CR40) 2013; 14 K Sato (344_CR11) 2009; 59 F Breseghello (344_CR21) 2006; 172 J Wassom (344_CR19) 2008; 48 X Luo (344_CR45) 2013; 6 RK Meena (344_CR48) 2017; 9 GA Van der Auwera (344_CR36) 2013; 11 K Hori (344_CR10) 2005; 16 V Vadez (344_CR16) 2012; 30 J Ni (344_CR22) 2009 A McKenna (344_CR35) 2010; 20 A Abe (344_CR44) 2012; 30 S Fukuoka (344_CR25) 2010; 3 HF Lu (344_CR27) 2014; 127 M Ashikari (344_CR4) 2006; 11 YS Liang (344_CR2) 2011; 18 S Kosugi (344_CR33) 2013; 8 H Hisano (344_CR30) 2017; 18 MA DePristo (344_CR37) 2011; 43 HX Lin (344_CR7) 1996; 92 MJ Cobos (344_CR15) 2009; 111 C Damerval (344_CR47) 1994; 137 HX Lin (344_CR6) 1995; 28 JI Yonemaru (344_CR23) 2010; 3 H Takaji (344_CR26) 2013; 74 A Nikolic (344_CR20) 2013; 45 S Konishi (344_CR5) 2006; 312 H Li (344_CR31) 2009; 25 FF Xu (344_CR28) 2015; 10 TR James (344_CR39) 2011; 29 CK Kim (344_CR24) 2009; 8 Y Duan (344_CR43) 2015; 34 TS Grewal (344_CR12) 2007; 116 M Ashikari (344_CR3) 2005; 309 S Das (344_CR29) 2015; 22 J Knoll (344_CR17) 2008; 116 S Berri (344_CR42) 2009; 9 GC Eizenga (344_CR1) 2013; 31 DB Yoon (344_CR9) 2006; 112 HS Ryu (344_CR41) 2006; 25 S Rakshit (344_CR14) 2003; 132 B Langmead (344_CR34) 2009; 10 S Cho (344_CR13) 2002; 125 EE Schadt (344_CR46) 2003; 422 |
References_xml | – volume: 92 start-page: 920 year: 1996 ident: 344_CR7 publication-title: Theor Appl Genet. doi: 10.1007/BF00224031 – volume: 111 start-page: 130 year: 2009 ident: 344_CR15 publication-title: Field Crop Res. doi: 10.1016/j.fcr.2008.11.006 – volume: 137 start-page: 289 year: 1994 ident: 344_CR47 publication-title: Genetics doi: 10.1093/genetics/137.1.289 – volume: 28 start-page: 1 year: 1995 ident: 344_CR6 publication-title: Sci Agric. – volume: 18 start-page: 125 year: 2017 ident: 344_CR30 publication-title: BMC Genomics. doi: 10.1186/s12864-017-3511-2 – volume: 29 start-page: 24 year: 2011 ident: 344_CR39 publication-title: Nat Biotechnol. doi: 10.1038/nbt.1754 – volume: 45 start-page: 341 issue: 2 year: 2013 ident: 344_CR20 publication-title: Genetika. doi: 10.2298/GENSR1302341N – volume: 203 start-page: 17 issue: 1 year: 2015 ident: 344_CR18 publication-title: Euphytica. doi: 10.1007/s10681-014-1243-9 – volume: 3 start-page: 194 issue: 2 year: 2010 ident: 344_CR23 publication-title: Rice. doi: 10.1007/s12284-010-9041-z – volume: 8 start-page: 1 issue: 10 year: 2013 ident: 344_CR33 publication-title: PLoS One. doi: 10.1371/journal.pone.0075402 – volume: 11 start-page: 11.10.1 issue: 1110 year: 2013 ident: 344_CR36 publication-title: Curr Protoc Bioinform. – volume: 9 start-page: 120 year: 2009 ident: 344_CR42 publication-title: BMC Plant Biol. doi: 10.1186/1471-2229-9-120 – volume: 10 start-page: e0122206 issue: 3 year: 2015 ident: 344_CR28 publication-title: PLoS One. doi: 10.1371/journal.pone.0122206 – volume: 422 start-page: 297 year: 2003 ident: 344_CR46 publication-title: Nature doi: 10.1038/nature01434 – volume: 116 start-page: 529 year: 2007 ident: 344_CR12 publication-title: Theor Appl Genet. doi: 10.1007/s00122-007-0688-9 – volume: 30 start-page: 9 year: 2012 ident: 344_CR16 publication-title: Mol Breed. doi: 10.1007/s11032-011-9594-6 – volume: 20 start-page: 1297 year: 2010 ident: 344_CR35 publication-title: Genome Res. doi: 10.1101/gr.107524.110 – volume: 22 start-page: 193 year: 2015 ident: 344_CR29 publication-title: DNA Res doi: 10.1093/dnares/dsv004 – volume: 172 start-page: 1165 year: 2006 ident: 344_CR21 publication-title: Genetics. doi: 10.1534/genetics.105.044586 – volume: 107 start-page: 479 year: 2003 ident: 344_CR8 publication-title: Theor Appl Genet. doi: 10.1007/s00122-003-1270-8 – volume: 116 start-page: 577 issue: 4 year: 2008 ident: 344_CR17 publication-title: Theor Appl Genet. doi: 10.1007/s00122-007-0692-0 – volume: 8 start-page: 2963 issue: 13 year: 2009 ident: 344_CR24 publication-title: Afr J Biotech. – volume: 74 start-page: 174 year: 2013 ident: 344_CR26 publication-title: Plant J. doi: 10.1111/tpj.12105 – volume: 25 start-page: 2078 year: 2009 ident: 344_CR32 publication-title: Bioinformatics. doi: 10.1093/bioinformatics/btp352 – volume: 30 start-page: 174 year: 2012 ident: 344_CR44 publication-title: Nat Biotechnol. doi: 10.1038/nbt.2095 – volume: 132 start-page: 23 year: 2003 ident: 344_CR14 publication-title: Euphytica. doi: 10.1023/A:1024681422799 – volume: 43 start-page: 491 issue: 5 year: 2011 ident: 344_CR37 publication-title: NatGenet. – volume: 25 start-page: 1754 year: 2009 ident: 344_CR31 publication-title: Bioinformatics. doi: 10.1093/bioinformatics/btp324 – volume: 309 start-page: 741 issue: 5735 year: 2005 ident: 344_CR3 publication-title: Science doi: 10.1126/science.1113373 – volume: 11 start-page: 344 year: 2006 ident: 344_CR4 publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2006.05.008 – volume: 48 start-page: 243 issue: 1 year: 2008 ident: 344_CR19 publication-title: Crop Sci. doi: 10.2135/cropsci2007.04.0205 – volume: 112 start-page: 1052 year: 2006 ident: 344_CR9 publication-title: Theor Appl Genet. doi: 10.1007/s00122-006-0207-4 – volume: 10 start-page: R251 issue: 3 year: 2009 ident: 344_CR34 publication-title: Genome Biol. doi: 10.1186/gb-2009-10-3-r25 – volume: 59 start-page: 645 year: 2009 ident: 344_CR11 publication-title: Breed Sci. doi: 10.1270/jsbbs.59.645 – volume: 312 start-page: 1392 issue: 5578 year: 2006 ident: 344_CR5 publication-title: Science doi: 10.1126/science.1126410 – volume: 3 start-page: 131 year: 2010 ident: 344_CR25 publication-title: Rice. doi: 10.1007/s12284-010-9044-9 – volume: 16 start-page: 295 year: 2005 ident: 344_CR10 publication-title: Mol Breed. doi: 10.1007/s11032-005-0998-z – volume: 125 start-page: 285 year: 2002 ident: 344_CR13 publication-title: Euphytica. doi: 10.1023/A:1020872009306 – volume: 34 start-page: 831 issue: 5 year: 2015 ident: 344_CR43 publication-title: Plant Cell Rep. doi: 10.1007/s00299-015-1745-5 – year: 2009 ident: 344_CR22 publication-title: Database. doi: 10.1093/database/bap005 – volume: 127 start-page: 1491 year: 2014 ident: 344_CR27 publication-title: Theor Appl Genet. doi: 10.1007/s00122-014-2313-z – volume: 25 start-page: 836 issue: 8 year: 2006 ident: 344_CR41 publication-title: Plant Cell Rep. doi: 10.1007/s00299-006-0138-1 – volume: 31 start-page: 889 issue: 4 year: 2013 ident: 344_CR1 publication-title: Mol Breed. doi: 10.1007/s11032-013-9843-y – volume: 9 start-page: 304 issue: 2 year: 2017 ident: 344_CR48 publication-title: Interdiscip Sci: Comput Life Sci. doi: 10.1007/s12539-016-0152-0 – volume: 6 start-page: 33 year: 2013 ident: 344_CR45 publication-title: Rice doi: 10.1186/1939-8433-6-33 – volume: 14 start-page: 178 year: 2013 ident: 344_CR40 publication-title: Briefings Bioinform. doi: 10.1093/bib/bbs017 – volume: 14 start-page: 193 issue: 2 year: 2013 ident: 344_CR38 publication-title: Brief Bioinform. doi: 10.1093/bib/bbs012 – volume: 18 start-page: 265 issue: 4 year: 2011 ident: 344_CR2 publication-title: Rice Sci. doi: 10.1016/S1672-6308(12)60004-3 |
SSID | ssj0064830 |
Score | 2.1237926 |
SourceID | crossref |
SourceType | Enrichment Source Index Database |
StartPage | 730 |
Title | QTL-BSA: A Bulked Segregant Analysis and Visualization Pipeline for QTL-seq |
Volume | 11 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3NT9swFLc6pkm7IBibBgzkAzeUKXGcxOZWEBsCNoHWIm6RbWwUUXWMtgd22p--54-4KYIJdmjUuu5T4vfr-7LfewjtEMpAjWXabrqDg2JUnnCdVomoSiELwSS9svnO376XR0N6fFlc9np_OqeWZlP5Wf1-NK_kf7gKY8BXmyX7As5GojAA74G_cAUOw_VZPD4fnCb7P_o-u3x_Nrqx1qMGD_oa1mteb8TGxi-aiU2f9EmXu2fNrXb2pT1kaKlM9K-umerihAsJu0FTTlwIQblWEG0YcdQYHb-PQn7m4822EMd1jK42bvS4iWj6Klyo9ry5EWFaiEBkvHOawwtNnuUJqULhWO3HGAhgkMKLkjbrIIp2xGYV9mZ0-FQ9KtzTkOxMitye8YKXrVeY8Lkqa7fvH2i4eO5wXqPZ0qiBRu1o1PwVek3A0bDNP4ak3-rykjLXrSY-YUi78smXD--jY9p0bJTBCloOzgXue6Ssop4ev0NvfLvR-zV0EvCyh_vYowVHtOAWLRjQghfQglu0YEALDmh5j4ZfDgcHR0loppEoQtg0oWUJvr7hxtp4KZGScUE5S0sBRiRP4X9Z6VyB93qlwcc1pchSptKCmVxxVhiWf0BL459j_RFhwfJMEiqLSmhKDXgYVEpumEyFIlLpdZS161CrUGneNjwZ1U-v_zrajb-59XVW_jF740WzN9HbOWw_oaXp3UxvgSk5lduO238BcTBqlA |
linkProvider | Springer Nature |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=QTL-BSA%3A+A+Bulked+Segregant+Analysis+and+Visualization+Pipeline+for+QTL-seq&rft.jtitle=Interdisciplinary+sciences+%3A+computational+life+sciences&rft.au=Wu%2C+Sanling&rft.au=Qiu%2C+Jie&rft.au=Gao%2C+Qikang&rft.date=2019-12-01&rft.issn=1913-2751&rft.eissn=1867-1462&rft.volume=11&rft.issue=4&rft.spage=730&rft.epage=737&rft_id=info:doi/10.1007%2Fs12539-019-00344-9&rft.externalDBID=n%2Fa&rft.externalDocID=10_1007_s12539_019_00344_9 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1913-2751&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1913-2751&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1913-2751&client=summon |