QTL-BSA: A Bulked Segregant Analysis and Visualization Pipeline for QTL-seq

Saved in:
Bibliographic Details
Published inInterdisciplinary sciences : computational life sciences Vol. 11; no. 4; pp. 730 - 737
Main Authors Wu, Sanling, Qiu, Jie, Gao, Qikang
Format Journal Article
LanguageEnglish
Japanese
Published 01.12.2019
Online AccessGet full text
ISSN1913-2751
1867-1462
DOI10.1007/s12539-019-00344-9

Cover

Loading…
Author Qiu, Jie
Wu, Sanling
Gao, Qikang
Author_xml – sequence: 1
  givenname: Sanling
  orcidid: 0000-0001-7734-6542
  surname: Wu
  fullname: Wu, Sanling
– sequence: 2
  givenname: Jie
  surname: Qiu
  fullname: Qiu, Jie
– sequence: 3
  givenname: Qikang
  surname: Gao
  fullname: Gao, Qikang
BookMark eNp9kM1OAjEUhRuDiYC-gKu-QPX2Zzqtu4H4F0nUgG6bMrSkOnawHRb49A7iyoWLm3M330nON0KD2EaH0DmFCwpQXmbKCq4J0P6AC0H0ERpSJUtChWSD_teUE1YW9ASNcn4DkEJxGKKH58WMTObVFa7wZNu8uxWeu3Vyaxs7XEXb7HLI2MYVfg15a5vwZbvQRvwUNq4J0WHfJrzvyO7zFB1722R39ptj9HJzvZjekdnj7f20mpGaMdURISWj1GvPaEGBLZdKW6EVSAul0LAsbOl4rcpi5SSTXloKqoZCeV5rVXjFx4gdeuvU5pycN5sUPmzaGQpmr8McdJheh_nRYXQPqT9QHbqfLV2yofkP_QaEoWRW
CitedBy_id crossref_primary_10_1016_j_jia_2024_02_005
crossref_primary_10_3389_fpls_2021_809959
crossref_primary_10_3389_fpls_2023_1042913
crossref_primary_10_3390_plants12030559
crossref_primary_10_3390_ijms21062162
crossref_primary_10_1038_s41598_021_91101_w
crossref_primary_10_1080_1343943X_2021_1927766
crossref_primary_10_3390_agronomy12040790
crossref_primary_10_17221_36_2021_CJGPB
crossref_primary_10_3390_ijms23052405
crossref_primary_10_1007_s10681_021_02964_z
crossref_primary_10_1016_j_csbj_2022_05_009
Cites_doi 10.1007/BF00224031
10.1016/j.fcr.2008.11.006
10.1093/genetics/137.1.289
10.1186/s12864-017-3511-2
10.1038/nbt.1754
10.2298/GENSR1302341N
10.1007/s10681-014-1243-9
10.1007/s12284-010-9041-z
10.1371/journal.pone.0075402
10.1186/1471-2229-9-120
10.1371/journal.pone.0122206
10.1038/nature01434
10.1007/s00122-007-0688-9
10.1007/s11032-011-9594-6
10.1101/gr.107524.110
10.1093/dnares/dsv004
10.1534/genetics.105.044586
10.1007/s00122-003-1270-8
10.1007/s00122-007-0692-0
10.1111/tpj.12105
10.1093/bioinformatics/btp352
10.1038/nbt.2095
10.1023/A:1024681422799
10.1093/bioinformatics/btp324
10.1126/science.1113373
10.1016/j.tplants.2006.05.008
10.2135/cropsci2007.04.0205
10.1007/s00122-006-0207-4
10.1186/gb-2009-10-3-r25
10.1270/jsbbs.59.645
10.1126/science.1126410
10.1007/s12284-010-9044-9
10.1007/s11032-005-0998-z
10.1023/A:1020872009306
10.1007/s00299-015-1745-5
10.1093/database/bap005
10.1007/s00122-014-2313-z
10.1007/s00299-006-0138-1
10.1007/s11032-013-9843-y
10.1007/s12539-016-0152-0
10.1186/1939-8433-6-33
10.1093/bib/bbs017
10.1093/bib/bbs012
10.1016/S1672-6308(12)60004-3
ContentType Journal Article
DBID AAYXX
CITATION
DOI 10.1007/s12539-019-00344-9
DatabaseName CrossRef
DatabaseTitle CrossRef
DeliveryMethod fulltext_linktorsrc
Discipline Biology
EISSN 1867-1462
EndPage 737
ExternalDocumentID 10_1007_s12539_019_00344_9
GroupedDBID ---
06C
06D
0R~
0VY
1N0
29~
2KG
2VQ
2~H
30V
4.4
406
408
409
40D
40E
53G
67N
6NX
7X2
7X7
7XC
88E
8CJ
8FE
8FG
8FH
8FI
8FJ
96X
AACDK
AAHNG
AAIAL
AAJBT
AAJKR
AANXM
AANZL
AAPKM
AARHV
AARTL
AASML
AATNV
AATVU
AAUYE
AAWCG
AAYIU
AAYQN
AAYTO
AAYXX
AAYZH
AAZMS
ABAKF
ABBRH
ABBXA
ABDBE
ABDZT
ABECU
ABFTV
ABHQN
ABJNI
ABJOX
ABKCH
ABMQK
ABQBU
ABSXP
ABTEG
ABTHY
ABTKH
ABTMW
ABUWG
ABWNU
ABXPI
ACAOD
ACDTI
ACGFS
ACHSB
ACIWK
ACKNC
ACMDZ
ACMLO
ACOKC
ACOMO
ACPIV
ACPRK
ACZOJ
ADBBV
ADHHG
ADHIR
ADKNI
ADRFC
ADURQ
ADYFF
ADZKW
AEBTG
AEFQL
AEGNC
AEJHL
AEJRE
AEMSY
AEOHA
AEPYU
AESKC
AEUYN
AEVLU
AEXYK
AFDZB
AFKRA
AFLOW
AFOHR
AFQWF
AFRAH
AFWTZ
AFZKB
AGAYW
AGDGC
AGJBK
AGMZJ
AGQEE
AGQMX
AGRTI
AGWZB
AGYKE
AHAVH
AHBYD
AHKAY
AHMBA
AHPBZ
AHSBF
AHYZX
AIAKS
AIGIU
AIIXL
AILAN
AITGF
AJBLW
AJRNO
AJZVZ
ALFXC
ALIPV
ALMA_UNASSIGNED_HOLDINGS
AMKLP
AMXSW
AMYLF
AMYQR
ANMIH
AOCGG
APEBS
ARAPS
ASPBG
ATCPS
ATHPR
AUKKA
AVWKF
AXYYD
AYFIA
AZFZN
BA0
BBNVY
BENPR
BGLVJ
BGNMA
BHPHI
BKSAR
BPHCQ
BVXVI
CAG
CCPQU
CITATION
COF
D1J
D1K
DDRTE
DNIVK
DPUIP
EBD
EBLON
EBS
EIOEI
EJD
EMOBN
ESBYG
F5P
FERAY
FFXSO
FIGPU
FINBP
FNLPD
FRRFC
FSGXE
FYJPI
FYUFA
G-Y
G-Z
GGCAI
GGRSB
GJIRD
GQ7
GQ8
GXS
H13
HCIFZ
HF~
HG6
HLICF
HMCUK
HMJXF
HQYDN
HRMNR
HZ~
I0C
IJ-
IKXTQ
IWAJR
IZIGR
I~X
J-C
JBSCW
JCJTX
JZLTJ
K6-
KOV
LK5
LK8
LLZTM
M0K
M1P
M4Y
M7P
M7R
NPVJJ
NQJWS
NU0
O9-
O9J
P62
PATMY
PCBAR
PHGZM
PHGZT
PQQKQ
PROAC
PSQYO
PT4
PYCSY
Q2X
QOR
QOS
R89
RLLFE
ROL
RSV
S1Z
S27
S3A
S3B
SBL
SCL
SDH
SHX
SJYHP
SNE
SNPRN
SNX
SOHCF
SOJ
SPISZ
SRMVM
SSLCW
STPWE
SV3
T13
TSG
U2A
U9L
UG4
UKHRP
UOJIU
UTJUX
UZXMN
VC2
VFIZW
W48
WK8
ZMTXR
ZOVNA
~A9
ID FETCH-LOGICAL-c228t-466211f9f215102bb89a49806a07490b5a7e3c875de626f6a108c058f3c985f83
ISSN 1913-2751
IngestDate Thu Apr 24 22:53:16 EDT 2025
Tue Jul 01 02:19:18 EDT 2025
IsPeerReviewed false
IsScholarly true
Issue 4
Language English
Japanese
LinkModel OpenURL
MergedId FETCHMERGED-LOGICAL-c228t-466211f9f215102bb89a49806a07490b5a7e3c875de626f6a108c058f3c985f83
ORCID 0000-0001-7734-6542
PageCount 8
ParticipantIDs crossref_primary_10_1007_s12539_019_00344_9
crossref_citationtrail_10_1007_s12539_019_00344_9
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2019-12-01
PublicationDateYYYYMMDD 2019-12-01
PublicationDate_xml – month: 12
  year: 2019
  text: 2019-12-01
  day: 01
PublicationDecade 2010
PublicationTitle Interdisciplinary sciences : computational life sciences
PublicationYear 2019
References MJ Thomson (344_CR8) 2003; 107
H Li (344_CR32) 2009; 25
T Shehzad (344_CR18) 2015; 203
I Milne (344_CR38) 2013; 14
T Helga (344_CR40) 2013; 14
K Sato (344_CR11) 2009; 59
F Breseghello (344_CR21) 2006; 172
J Wassom (344_CR19) 2008; 48
X Luo (344_CR45) 2013; 6
RK Meena (344_CR48) 2017; 9
GA Van der Auwera (344_CR36) 2013; 11
K Hori (344_CR10) 2005; 16
V Vadez (344_CR16) 2012; 30
J Ni (344_CR22) 2009
A McKenna (344_CR35) 2010; 20
A Abe (344_CR44) 2012; 30
S Fukuoka (344_CR25) 2010; 3
HF Lu (344_CR27) 2014; 127
M Ashikari (344_CR4) 2006; 11
YS Liang (344_CR2) 2011; 18
S Kosugi (344_CR33) 2013; 8
H Hisano (344_CR30) 2017; 18
MA DePristo (344_CR37) 2011; 43
HX Lin (344_CR7) 1996; 92
MJ Cobos (344_CR15) 2009; 111
C Damerval (344_CR47) 1994; 137
HX Lin (344_CR6) 1995; 28
JI Yonemaru (344_CR23) 2010; 3
H Takaji (344_CR26) 2013; 74
A Nikolic (344_CR20) 2013; 45
S Konishi (344_CR5) 2006; 312
H Li (344_CR31) 2009; 25
FF Xu (344_CR28) 2015; 10
TR James (344_CR39) 2011; 29
CK Kim (344_CR24) 2009; 8
Y Duan (344_CR43) 2015; 34
TS Grewal (344_CR12) 2007; 116
M Ashikari (344_CR3) 2005; 309
S Das (344_CR29) 2015; 22
J Knoll (344_CR17) 2008; 116
S Berri (344_CR42) 2009; 9
GC Eizenga (344_CR1) 2013; 31
DB Yoon (344_CR9) 2006; 112
HS Ryu (344_CR41) 2006; 25
S Rakshit (344_CR14) 2003; 132
B Langmead (344_CR34) 2009; 10
S Cho (344_CR13) 2002; 125
EE Schadt (344_CR46) 2003; 422
References_xml – volume: 92
  start-page: 920
  year: 1996
  ident: 344_CR7
  publication-title: Theor Appl Genet.
  doi: 10.1007/BF00224031
– volume: 111
  start-page: 130
  year: 2009
  ident: 344_CR15
  publication-title: Field Crop Res.
  doi: 10.1016/j.fcr.2008.11.006
– volume: 137
  start-page: 289
  year: 1994
  ident: 344_CR47
  publication-title: Genetics
  doi: 10.1093/genetics/137.1.289
– volume: 28
  start-page: 1
  year: 1995
  ident: 344_CR6
  publication-title: Sci Agric.
– volume: 18
  start-page: 125
  year: 2017
  ident: 344_CR30
  publication-title: BMC Genomics.
  doi: 10.1186/s12864-017-3511-2
– volume: 29
  start-page: 24
  year: 2011
  ident: 344_CR39
  publication-title: Nat Biotechnol.
  doi: 10.1038/nbt.1754
– volume: 45
  start-page: 341
  issue: 2
  year: 2013
  ident: 344_CR20
  publication-title: Genetika.
  doi: 10.2298/GENSR1302341N
– volume: 203
  start-page: 17
  issue: 1
  year: 2015
  ident: 344_CR18
  publication-title: Euphytica.
  doi: 10.1007/s10681-014-1243-9
– volume: 3
  start-page: 194
  issue: 2
  year: 2010
  ident: 344_CR23
  publication-title: Rice.
  doi: 10.1007/s12284-010-9041-z
– volume: 8
  start-page: 1
  issue: 10
  year: 2013
  ident: 344_CR33
  publication-title: PLoS One.
  doi: 10.1371/journal.pone.0075402
– volume: 11
  start-page: 11.10.1
  issue: 1110
  year: 2013
  ident: 344_CR36
  publication-title: Curr Protoc Bioinform.
– volume: 9
  start-page: 120
  year: 2009
  ident: 344_CR42
  publication-title: BMC Plant Biol.
  doi: 10.1186/1471-2229-9-120
– volume: 10
  start-page: e0122206
  issue: 3
  year: 2015
  ident: 344_CR28
  publication-title: PLoS One.
  doi: 10.1371/journal.pone.0122206
– volume: 422
  start-page: 297
  year: 2003
  ident: 344_CR46
  publication-title: Nature
  doi: 10.1038/nature01434
– volume: 116
  start-page: 529
  year: 2007
  ident: 344_CR12
  publication-title: Theor Appl Genet.
  doi: 10.1007/s00122-007-0688-9
– volume: 30
  start-page: 9
  year: 2012
  ident: 344_CR16
  publication-title: Mol Breed.
  doi: 10.1007/s11032-011-9594-6
– volume: 20
  start-page: 1297
  year: 2010
  ident: 344_CR35
  publication-title: Genome Res.
  doi: 10.1101/gr.107524.110
– volume: 22
  start-page: 193
  year: 2015
  ident: 344_CR29
  publication-title: DNA Res
  doi: 10.1093/dnares/dsv004
– volume: 172
  start-page: 1165
  year: 2006
  ident: 344_CR21
  publication-title: Genetics.
  doi: 10.1534/genetics.105.044586
– volume: 107
  start-page: 479
  year: 2003
  ident: 344_CR8
  publication-title: Theor Appl Genet.
  doi: 10.1007/s00122-003-1270-8
– volume: 116
  start-page: 577
  issue: 4
  year: 2008
  ident: 344_CR17
  publication-title: Theor Appl Genet.
  doi: 10.1007/s00122-007-0692-0
– volume: 8
  start-page: 2963
  issue: 13
  year: 2009
  ident: 344_CR24
  publication-title: Afr J Biotech.
– volume: 74
  start-page: 174
  year: 2013
  ident: 344_CR26
  publication-title: Plant J.
  doi: 10.1111/tpj.12105
– volume: 25
  start-page: 2078
  year: 2009
  ident: 344_CR32
  publication-title: Bioinformatics.
  doi: 10.1093/bioinformatics/btp352
– volume: 30
  start-page: 174
  year: 2012
  ident: 344_CR44
  publication-title: Nat Biotechnol.
  doi: 10.1038/nbt.2095
– volume: 132
  start-page: 23
  year: 2003
  ident: 344_CR14
  publication-title: Euphytica.
  doi: 10.1023/A:1024681422799
– volume: 43
  start-page: 491
  issue: 5
  year: 2011
  ident: 344_CR37
  publication-title: NatGenet.
– volume: 25
  start-page: 1754
  year: 2009
  ident: 344_CR31
  publication-title: Bioinformatics.
  doi: 10.1093/bioinformatics/btp324
– volume: 309
  start-page: 741
  issue: 5735
  year: 2005
  ident: 344_CR3
  publication-title: Science
  doi: 10.1126/science.1113373
– volume: 11
  start-page: 344
  year: 2006
  ident: 344_CR4
  publication-title: Trends Plant Sci.
  doi: 10.1016/j.tplants.2006.05.008
– volume: 48
  start-page: 243
  issue: 1
  year: 2008
  ident: 344_CR19
  publication-title: Crop Sci.
  doi: 10.2135/cropsci2007.04.0205
– volume: 112
  start-page: 1052
  year: 2006
  ident: 344_CR9
  publication-title: Theor Appl Genet.
  doi: 10.1007/s00122-006-0207-4
– volume: 10
  start-page: R251
  issue: 3
  year: 2009
  ident: 344_CR34
  publication-title: Genome Biol.
  doi: 10.1186/gb-2009-10-3-r25
– volume: 59
  start-page: 645
  year: 2009
  ident: 344_CR11
  publication-title: Breed Sci.
  doi: 10.1270/jsbbs.59.645
– volume: 312
  start-page: 1392
  issue: 5578
  year: 2006
  ident: 344_CR5
  publication-title: Science
  doi: 10.1126/science.1126410
– volume: 3
  start-page: 131
  year: 2010
  ident: 344_CR25
  publication-title: Rice.
  doi: 10.1007/s12284-010-9044-9
– volume: 16
  start-page: 295
  year: 2005
  ident: 344_CR10
  publication-title: Mol Breed.
  doi: 10.1007/s11032-005-0998-z
– volume: 125
  start-page: 285
  year: 2002
  ident: 344_CR13
  publication-title: Euphytica.
  doi: 10.1023/A:1020872009306
– volume: 34
  start-page: 831
  issue: 5
  year: 2015
  ident: 344_CR43
  publication-title: Plant Cell Rep.
  doi: 10.1007/s00299-015-1745-5
– year: 2009
  ident: 344_CR22
  publication-title: Database.
  doi: 10.1093/database/bap005
– volume: 127
  start-page: 1491
  year: 2014
  ident: 344_CR27
  publication-title: Theor Appl Genet.
  doi: 10.1007/s00122-014-2313-z
– volume: 25
  start-page: 836
  issue: 8
  year: 2006
  ident: 344_CR41
  publication-title: Plant Cell Rep.
  doi: 10.1007/s00299-006-0138-1
– volume: 31
  start-page: 889
  issue: 4
  year: 2013
  ident: 344_CR1
  publication-title: Mol Breed.
  doi: 10.1007/s11032-013-9843-y
– volume: 9
  start-page: 304
  issue: 2
  year: 2017
  ident: 344_CR48
  publication-title: Interdiscip Sci: Comput Life Sci.
  doi: 10.1007/s12539-016-0152-0
– volume: 6
  start-page: 33
  year: 2013
  ident: 344_CR45
  publication-title: Rice
  doi: 10.1186/1939-8433-6-33
– volume: 14
  start-page: 178
  year: 2013
  ident: 344_CR40
  publication-title: Briefings Bioinform.
  doi: 10.1093/bib/bbs017
– volume: 14
  start-page: 193
  issue: 2
  year: 2013
  ident: 344_CR38
  publication-title: Brief Bioinform.
  doi: 10.1093/bib/bbs012
– volume: 18
  start-page: 265
  issue: 4
  year: 2011
  ident: 344_CR2
  publication-title: Rice Sci.
  doi: 10.1016/S1672-6308(12)60004-3
SSID ssj0064830
Score 2.1237926
SourceID crossref
SourceType Enrichment Source
Index Database
StartPage 730
Title QTL-BSA: A Bulked Segregant Analysis and Visualization Pipeline for QTL-seq
Volume 11
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3NT9swFLc6pkm7IBibBgzkAzeUKXGcxOZWEBsCNoHWIm6RbWwUUXWMtgd22p--54-4KYIJdmjUuu5T4vfr-7LfewjtEMpAjWXabrqDg2JUnnCdVomoSiELwSS9svnO376XR0N6fFlc9np_OqeWZlP5Wf1-NK_kf7gKY8BXmyX7As5GojAA74G_cAUOw_VZPD4fnCb7P_o-u3x_Nrqx1qMGD_oa1mteb8TGxi-aiU2f9EmXu2fNrXb2pT1kaKlM9K-umerihAsJu0FTTlwIQblWEG0YcdQYHb-PQn7m4822EMd1jK42bvS4iWj6Klyo9ry5EWFaiEBkvHOawwtNnuUJqULhWO3HGAhgkMKLkjbrIIp2xGYV9mZ0-FQ9KtzTkOxMitye8YKXrVeY8Lkqa7fvH2i4eO5wXqPZ0qiBRu1o1PwVek3A0bDNP4ak3-rykjLXrSY-YUi78smXD--jY9p0bJTBCloOzgXue6Ssop4ev0NvfLvR-zV0EvCyh_vYowVHtOAWLRjQghfQglu0YEALDmh5j4ZfDgcHR0loppEoQtg0oWUJvr7hxtp4KZGScUE5S0sBRiRP4X9Z6VyB93qlwcc1pchSptKCmVxxVhiWf0BL459j_RFhwfJMEiqLSmhKDXgYVEpumEyFIlLpdZS161CrUGneNjwZ1U-v_zrajb-59XVW_jF740WzN9HbOWw_oaXp3UxvgSk5lduO238BcTBqlA
linkProvider Springer Nature
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=QTL-BSA%3A+A+Bulked+Segregant+Analysis+and+Visualization+Pipeline+for+QTL-seq&rft.jtitle=Interdisciplinary+sciences+%3A+computational+life+sciences&rft.au=Wu%2C+Sanling&rft.au=Qiu%2C+Jie&rft.au=Gao%2C+Qikang&rft.date=2019-12-01&rft.issn=1913-2751&rft.eissn=1867-1462&rft.volume=11&rft.issue=4&rft.spage=730&rft.epage=737&rft_id=info:doi/10.1007%2Fs12539-019-00344-9&rft.externalDBID=n%2Fa&rft.externalDocID=10_1007_s12539_019_00344_9
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1913-2751&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1913-2751&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1913-2751&client=summon