Microwave-assisted synthesis of pomalidomide building blocks for rapid PROTAC and molecular glue development

Targeted protein degradation (TPD) is revolutionizing drug discovery, but PROTAC synthesis remains challenging due to multi-step synthesis and slow linker installation via S N Ar on 4-fluorothalidomide. Here, we optimize a microwave-assisted synthesis (MAS) of pomalidomide building blocks, achieving...

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Published inChemical communications (Cambridge, England) Vol. 61; no. 24; pp. 467 - 4673
Main Authors Abdallah, Diaaeldin I, Israelian, Johan, Hasan, Lina S, Patel, Naman H, Keillor, Jeffrey W, Wright, Timothy B, Saqib, Bilal, de Araujo, Elvin D, Gunning, Patrick T
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Published England Royal Society of Chemistry 19.03.2025
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Abstract Targeted protein degradation (TPD) is revolutionizing drug discovery, but PROTAC synthesis remains challenging due to multi-step synthesis and slow linker installation via S N Ar on 4-fluorothalidomide. Here, we optimize a microwave-assisted synthesis (MAS) of pomalidomide building blocks, achieving high yields within 15 min - boosting yield by at least 14% at gram scale without the need for purification. Unlike conventional oil bath heating and overnight reactions, MAS streamlines degrader development. The method's utility was demonstrated by synthesizing ARV-110, highlighting MAS as a powerful tool for accelerating pomalidomide PROTAC and molecular glue discovery programs. A rapid and efficient microwave-assisted synthesis of pomalidomide analogs, improving upon prior methods to accelerate the discovery and optimization of degraders like clinical candidate ARV-110.
AbstractList Targeted protein degradation (TPD) is revolutionizing drug discovery, but PROTAC synthesis remains challenging due to multi-step synthesis and slow linker installation via SNAr on 4-fluorothalidomide. Here, we optimize a microwave-assisted synthesis (MAS) of pomalidomide building blocks, achieving high yields within 15 min - boosting yield by at least 14% at gram scale without the need for purification. Unlike conventional oil bath heating and overnight reactions, MAS streamlines degrader development. The method’s utility was demonstrated by synthesizing ARV-110, highlighting MAS as a powerful tool for accelerating pomalidomide PROTAC and molecular glue discovery programs.
Targeted protein degradation (TPD) is revolutionizing drug discovery, but PROTAC synthesis remains challenging due to multi-step synthesis and slow linker installation via SNAr on 4-fluorothalidomide. Here, we optimize a microwave-assisted synthesis (MAS) of pomalidomide building blocks, achieving high yields within 15 min - boosting yield by at least 14% at gram scale without the need for purification. Unlike conventional oil bath heating and overnight reactions, MAS streamlines degrader development. The method's utility was demonstrated by synthesizing ARV-110, highlighting MAS as a powerful tool for accelerating pomalidomide PROTAC and molecular glue discovery programs.Targeted protein degradation (TPD) is revolutionizing drug discovery, but PROTAC synthesis remains challenging due to multi-step synthesis and slow linker installation via SNAr on 4-fluorothalidomide. Here, we optimize a microwave-assisted synthesis (MAS) of pomalidomide building blocks, achieving high yields within 15 min - boosting yield by at least 14% at gram scale without the need for purification. Unlike conventional oil bath heating and overnight reactions, MAS streamlines degrader development. The method's utility was demonstrated by synthesizing ARV-110, highlighting MAS as a powerful tool for accelerating pomalidomide PROTAC and molecular glue discovery programs.
Targeted protein degradation (TPD) is revolutionizing drug discovery, but PROTAC synthesis remains challenging due to multi-step synthesis and slow linker installation via S N Ar on 4-fluorothalidomide. Here, we optimize a microwave-assisted synthesis (MAS) of pomalidomide building blocks, achieving high yields within 15 min - boosting yield by at least 14% at gram scale without the need for purification. Unlike conventional oil bath heating and overnight reactions, MAS streamlines degrader development. The method’s utility was demonstrated by synthesizing ARV-110, highlighting MAS as a powerful tool for accelerating pomalidomide PROTAC and molecular glue discovery programs.
Targeted protein degradation (TPD) is revolutionizing drug discovery, but PROTAC synthesis remains challenging due to multi-step synthesis and slow linker installation S Ar on 4-fluorothalidomide. Here, we optimize a microwave-assisted synthesis (MAS) of pomalidomide building blocks, achieving high yields within 15 min - boosting yield by at least 14% at gram scale without the need for purification. Unlike conventional oil bath heating and overnight reactions, MAS streamlines degrader development. The method's utility was demonstrated by synthesizing ARV-110, highlighting MAS as a powerful tool for accelerating pomalidomide PROTAC and molecular glue discovery programs.
Targeted protein degradation (TPD) is revolutionizing drug discovery, but PROTAC synthesis remains challenging due to multi-step synthesis and slow linker installation via S N Ar on 4-fluorothalidomide. Here, we optimize a microwave-assisted synthesis (MAS) of pomalidomide building blocks, achieving high yields within 15 min - boosting yield by at least 14% at gram scale without the need for purification. Unlike conventional oil bath heating and overnight reactions, MAS streamlines degrader development. The method's utility was demonstrated by synthesizing ARV-110, highlighting MAS as a powerful tool for accelerating pomalidomide PROTAC and molecular glue discovery programs. A rapid and efficient microwave-assisted synthesis of pomalidomide analogs, improving upon prior methods to accelerate the discovery and optimization of degraders like clinical candidate ARV-110.
Author Israelian, Johan
Saqib, Bilal
Gunning, Patrick T
Keillor, Jeffrey W
Wright, Timothy B
de Araujo, Elvin D
Abdallah, Diaaeldin I
Hasan, Lina S
Patel, Naman H
AuthorAffiliation Department of Chemistry
Department of Chemical & Physical Sciences
University of Toronto Mississauga
School of Molecular Biosciences, University of Glasgow, Glasgow
Department of Chemistry and Biomolecular Sciences
University of Ottawa
University of Toronto
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Cites_doi 10.1016/j.bmcl.2019.04.030
10.1039/D0SC05442A
10.1039/D0RA01378A
10.1016/j.bmcl.2011.01.134
10.1021/acsmedchemlett.2c00124
10.1039/D2CS00193D
10.1021/acsmedchemlett.1c00368
10.1038/leu.2012.119
10.1021/acscentsci.2c01317
10.1021/acs.jmedchem.2c00324
10.1073/pnas.141230798
10.1002/anie.200400655
10.1021/jacs.9b13652
10.1126/science.aab1433
10.1039/cs9912000001
10.1039/b803001b
10.1021/acs.oprd.0c00113
10.1021/ol201475j
10.1021/acs.oprd.0c00159
10.1200/JCO.2022.40.6_suppl.017
10.1021/acs.jmedchem.9b00516
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References Gao (D4CC03435J/cit22/1) 2022; 40
Li (D4CC03435J/cit6/1) 2022; 51
Wu (D4CC03435J/cit15/1) 2019; 62
Bricelj (D4CC03435J/cit8/1) 2021; 12
Lopez-Girona (D4CC03435J/cit2/1) 2012; 26
Mingos (D4CC03435J/cit11/1) 1991; 20
Zhang (D4CC03435J/cit14/1) 2022; 65
Henary (D4CC03435J/cit9/1) 2020; 10
Kitamura (D4CC03435J/cit19/1) 2020; 142
Sakamoto (D4CC03435J/cit1/1) 2001; 98
Brownsey (D4CC03435J/cit7/1) 2021; 12
Yang (D4CC03435J/cit20/1) 2020; 24
Deguchi (D4CC03435J/cit21/1) 2020
Hendrick (D4CC03435J/cit17/1) 2022; 13
Tang (D4CC03435J/cit18/1) 2011; 21
Toriki (D4CC03435J/cit3/1) 2023; 9
Edmondson (D4CC03435J/cit4/1) 2019; 29
Nguyen (D4CC03435J/cit10/1) 2020
Kappe (D4CC03435J/cit13/1) 2004; 43
Winter (D4CC03435J/cit5/1) 2015; 348
Kappe (D4CC03435J/cit12/1) 2008; 37
Suchý (D4CC03435J/cit16/1) 2011; 13
References_xml – volume: 29
  start-page: 1555
  year: 2019
  ident: D4CC03435J/cit4/1
  publication-title: Bioorg. Med. Chem. Lett.
  doi: 10.1016/j.bmcl.2019.04.030
– volume: 12
  start-page: 4519
  year: 2021
  ident: D4CC03435J/cit7/1
  publication-title: Chem. Sci.
  doi: 10.1039/D0SC05442A
– volume: 10
  start-page: 14170
  year: 2020
  ident: D4CC03435J/cit9/1
  publication-title: RSC Adv.
  doi: 10.1039/D0RA01378A
– volume: 21
  start-page: 2601
  year: 2011
  ident: D4CC03435J/cit18/1
  publication-title: Bioorg. Med. Chem. Lett.
  doi: 10.1016/j.bmcl.2011.01.134
– volume: 13
  start-page: 1182
  year: 2022
  ident: D4CC03435J/cit17/1
  publication-title: ACS Med. Chem. Lett.
  doi: 10.1021/acsmedchemlett.2c00124
– volume: 51
  start-page: 5214
  year: 2022
  ident: D4CC03435J/cit6/1
  publication-title: Chem. Soc. Rev.
  doi: 10.1039/D2CS00193D
– volume: 12
  start-page: 1733
  year: 2021
  ident: D4CC03435J/cit8/1
  publication-title: ACS Med. Chem. Lett.
  doi: 10.1021/acsmedchemlett.1c00368
– volume: 26
  start-page: 2326
  year: 2012
  ident: D4CC03435J/cit2/1
  publication-title: Leukemia
  doi: 10.1038/leu.2012.119
– volume: 9
  start-page: 915
  year: 2023
  ident: D4CC03435J/cit3/1
  publication-title: ACS Cent. Sci.
  doi: 10.1021/acscentsci.2c01317
– volume: 65
  start-page: 9096
  year: 2022
  ident: D4CC03435J/cit14/1
  publication-title: J. Med. Chem.
  doi: 10.1021/acs.jmedchem.2c00324
– volume: 98
  start-page: 8554
  year: 2001
  ident: D4CC03435J/cit1/1
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.141230798
– volume: 43
  start-page: 6250
  year: 2004
  ident: D4CC03435J/cit13/1
  publication-title: Angew. Chem., Int. Ed.
  doi: 10.1002/anie.200400655
– volume: 142
  start-page: 10899
  year: 2020
  ident: D4CC03435J/cit19/1
  publication-title: J. Am. Chem. Soc.
  doi: 10.1021/jacs.9b13652
– volume: 348
  start-page: 1376
  year: 2015
  ident: D4CC03435J/cit5/1
  publication-title: Science
  doi: 10.1126/science.aab1433
– volume: 20
  start-page: 1
  year: 1991
  ident: D4CC03435J/cit11/1
  publication-title: Chem. Soc. Rev.
  doi: 10.1039/cs9912000001
– volume: 37
  start-page: 1127
  year: 2008
  ident: D4CC03435J/cit12/1
  publication-title: Chem. Soc. Rev.
  doi: 10.1039/b803001b
– year: 2020
  ident: D4CC03435J/cit21/1
  publication-title: Org. Process Res. Dev.
  doi: 10.1021/acs.oprd.0c00113
– volume: 13
  start-page: 3952
  year: 2011
  ident: D4CC03435J/cit16/1
  publication-title: Org. Lett.
  doi: 10.1021/ol201475j
– volume: 24
  start-page: 916
  year: 2020
  ident: D4CC03435J/cit20/1
  publication-title: Org. Process Res. Dev.
  doi: 10.1021/acs.oprd.0c00159
– volume: 40
  start-page: 17
  year: 2022
  ident: D4CC03435J/cit22/1
  publication-title: J. Clin. Oncol.
  doi: 10.1200/JCO.2022.40.6_suppl.017
– start-page: 599
  year: 2020
  ident: D4CC03435J/cit10/1
  publication-title: Appl. Catal., A
– volume: 62
  start-page: 7042
  year: 2019
  ident: D4CC03435J/cit15/1
  publication-title: J. Med. Chem.
  doi: 10.1021/acs.jmedchem.9b00516
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Snippet Targeted protein degradation (TPD) is revolutionizing drug discovery, but PROTAC synthesis remains challenging due to multi-step synthesis and slow linker...
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SubjectTerms Microwaves
Molecular Structure
Thalidomide - analogs & derivatives
Thalidomide - chemical synthesis
Thalidomide - chemistry
Title Microwave-assisted synthesis of pomalidomide building blocks for rapid PROTAC and molecular glue development
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