The genome sequence of the giant clam, Tridacna gigas (Linnaeus, 1758)
We present a chromosomal-level genome assembly from an individual (the giant clam; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,175.9 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and...
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Published in | Wellcome open research Vol. 9; p. 145 |
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Main Authors | , , , , , , , , , , , , |
Format | Journal Article |
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Abstract | We present a chromosomal-level genome assembly from an individual
(the giant clam; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,175.9 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 25.34 kilobases in length. Gene annotation of this assembly on Ensembl identified 18,177 protein coding genes. |
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AbstractList | We present a chromosomal-level genome assembly from an individual
Tridacna gigas
(the giant clam; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,175.9 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 25.34 kilobases in length. Gene annotation of this assembly on Ensembl identified 18,177 protein coding genes. We present a chromosomal-level genome assembly from an individual Tridacna gigas (the giant clam; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,175.9 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 25.34 kilobases in length. Gene annotation of this assembly on Ensembl identified 18,177 protein coding genes. We present a chromosomal-level genome assembly from an individual (the giant clam; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,175.9 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 25.34 kilobases in length. Gene annotation of this assembly on Ensembl identified 18,177 protein coding genes. |
Author | Paulini, Michael Oatley, Graeme Gettle, Noah Niu, Haoyu Aunin, Eerik Li, Jingchun Lopez, Jose Victor Santos, Camilla Li, Ruiqi Clayton-Lucey, Isabelle Ailish Sinclair, Elizabeth McKenna, Victoria O'Brien, Rebecca |
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Cites_doi | 10.1093/bioinformatics/btz540 10.5281/zenodo.7755665 10.17504/protocols.io.8epv5xxy6g1b/v1 10.1016/j.cell.2014.11.021 10.1038/s41586-021-03451-0 10.1016/j.ympev.2012.08.023 10.1093/bioinformatics/btaa025 10.17504/protocols.io.x54v9prmqg3e/v1 10.1111/1755-0998.13160 10.1080/13880292.2015.1044795 10.1016/j.biocon.2014.11.004 10.1111/ddi.13609 10.1093/bioinformatics/btv351 10.17504/protocols.io.kxygx3y1dg8j/v1 10.1038/s41592-020-01056-5 10.1109/IPDPS.2019.00041 10.1534/g3.119.400908 10.1093/nar/gky1049 10.1093/database/baw093 10.1186/s13059-018-1486-1 10.1093/molbev/msab199 10.17504/protocols.io.6qpvr36n3vmk/v1 10.17504/protocols.io.eq2lyjp5qlx9/v1 10.1038/nbt.3820 10.17504/protocols.io.6qpvr33novmk/v1 10.17504/protocols.io.8epv5x2zjg1b/v1 10.1093/gigascience/giaa153 10.1186/s12859-023-05385-y 10.1186/s13059-020-02134-9 10.5281/zenodo.6785935 10.3389/fmars.2021.627722 10.1007/s00227-014-2545-0 10.12688/wellcomeopenres.17222.1 10.1093/bioinformatics/btac808 10.1093/bioinformatics/btw159 |
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Keywords | giant clam genome sequence chromosomal Veneroida Tridacna gigas |
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Snippet | We present a chromosomal-level genome assembly from an individual
(the giant clam; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,175.9... We present a chromosomal-level genome assembly from an individual Tridacna gigas (the giant clam; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome... We present a chromosomal-level genome assembly from an individual Tridacna gigas (the giant clam; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome... |
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Title | The genome sequence of the giant clam, Tridacna gigas (Linnaeus, 1758) |
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