The genome sequence of the red compost earthworm, Lumbricus rubellus (Hoffmeister, 1843)
We present a genome assembly from an individual (the red compost earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome sequence is 787.5 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is...
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Published in | Wellcome open research Vol. 8; p. 354 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
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2023
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Abstract | We present a genome assembly from an individual
(the red compost earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome sequence is 787.5 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.81 kilobases in length. Gene annotation of this assembly on Ensembl identified 33,426 protein coding genes. |
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AbstractList | We present a genome assembly from an individual Lumbricus rubellus (the red compost earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome sequence is 787.5 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.81 kilobases in length. Gene annotation of this assembly on Ensembl identified 33,426 protein coding genes. We present a genome assembly from an individual Lumbricus rubellus (the red compost earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome sequence is 787.5 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.81 kilobases in length. Gene annotation of this assembly on Ensembl identified 33,426 protein coding genes. We present a genome assembly from an individual (the red compost earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome sequence is 787.5 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.81 kilobases in length. Gene annotation of this assembly on Ensembl identified 33,426 protein coding genes. |
Author | Short, Stephen Spurgeon, David Robinson, Alex Green Etxabe, Amaia Kille, Peter |
Author_xml | – sequence: 1 givenname: Stephen surname: Short fullname: Short, Stephen organization: UK Centre for Ecology & Hydrology, Wallingford, England, UK – sequence: 2 givenname: Amaia surname: Green Etxabe fullname: Green Etxabe, Amaia organization: UK Centre for Ecology & Hydrology, Wallingford, England, UK – sequence: 3 givenname: Alex surname: Robinson fullname: Robinson, Alex organization: UK Centre for Ecology & Hydrology, Wallingford, England, UK – sequence: 4 givenname: David surname: Spurgeon fullname: Spurgeon, David organization: UK Centre for Ecology & Hydrology, Wallingford, England, UK – sequence: 5 givenname: Peter surname: Kille fullname: Kille, Peter organization: Cardiff University, Cardiff, Wales, UK |
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Cites_doi | 10.1093/bioinformatics/btz540 10.1038/s41586-021-03451-0 10.1016/j.pedobi.2009.05.001 10.5281/zenodo.6785935 10.1093/database/baw093 10.5281/zenodo.7755665 10.1093/bioinformatics/btaa025 10.1093/molbev/msab199 10.1109/IPDPS.2019.00041 10.1093/bioinformatics/btv351 10.1038/nbt.3820 10.1007/s12257-011-0147-y 10.1016/j.soilbio.2016.03.015 10.1111/1755-0998.13160 10.1186/s12859-023-05385-y 10.1186/s13059-018-1486-1 10.1016/j.ympev.2012.08.023 10.1186/s13059-020-02134-9 10.1016/j.cell.2014.11.021 10.1534/g3.119.400908 10.1186/s12862-015-0488-9 10.1242/dev.074724 10.1093/nar/gky1049 10.1016/j.ecoenv.2003.08.022 10.1093/gigascience/giaa153 10.1111/jbi.13744 10.1038/s41592-020-01056-5 10.1016/j.apsoil.2016.07.013 10.1093/bioinformatics/btac808 |
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Keywords | genome sequence red compost earthworm chromosomal Lumbricus rubellus Haplotaxida |
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Snippet | We present a genome assembly from an individual
(the red compost earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome sequence is 787.5... We present a genome assembly from an individual Lumbricus rubellus (the red compost earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome... We present a genome assembly from an individual Lumbricus rubellus (the red compost earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome... |
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SubjectTerms | chromosomal eng genome sequence Haplotaxida Lumbricus rubellus red compost earthworm |
Title | The genome sequence of the red compost earthworm, Lumbricus rubellus (Hoffmeister, 1843) |
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