RNA targeting by DNA binding drugs: Structural, conformational and energetic aspects of the binding of quinacrine and DAPI to A-form and HL-form of poly(rC)·poly(rG)
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Published in | Biochimica et biophysica acta. General subjects Vol. 1770; no. 12; pp. 1636 - 1650 |
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Main Authors | , , |
Format | Journal Article |
Language | English Japanese |
Published |
01.12.2007
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Author | Sinha, Rangana Hossain, Maidul Kumar, Gopinatha Suresh |
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Cites_doi | 10.1128/CMR.14.1.114-128.2001 10.1016/0014-5793(93)81513-Y 10.1111/j.1751-1097.1986.tb03578.x 10.1016/j.bmc.2003.09.028 10.1016/j.molstruc.2006.05.004 10.1021/bi000474a 10.1021/bi00061a015 10.1016/S0969-2126(00)00126-X 10.1016/S0021-9258(18)53563-8 10.1021/ja00195a080 10.1093/nar/gkh515 10.1016/1074-5521(95)90047-0 10.1006/jmbi.1997.1590 10.1016/0022-2836(89)90608-6 10.1042/bj1310749 10.1002/(SICI)1097-0282(1997)44:3<201::AID-BIP2>3.0.CO;2-Z 10.1021/bi00381a031 10.1016/j.bmc.2005.09.007 10.1016/j.bbagen.2007.03.001 10.1074/jbc.271.44.27608 10.1021/bi00488a036 10.1016/j.bpc.2006.06.009 10.1016/S0968-0896(97)00063-1 10.1021/bi00066a035 10.1016/j.bpc.2006.11.001 10.1021/bi00127a010 10.1093/nar/13.24.8955 10.1093/nar/18.11.3371 10.1016/S0304-4165(00)00140-9 10.1006/bbrc.1995.1342 10.1016/S0010-4825(96)00034-0 10.1016/j.bbagen.2007.05.005 10.1016/0005-2728(77)90025-1 10.1021/ar000118k 10.1002/bip.360340108 10.1016/S0021-9258(18)47389-9 10.1562/2005-01-25-IR-427 10.1021/jm00034a004 10.1002/bip.360260809 10.1016/0006-291X(87)91284-8 10.1093/nar/23.8.1333 10.1080/07391102.2000.10506674 10.1016/S0092-8674(04)00045-5 10.1021/ja00098a004 10.1016/0022-2836(74)90031-X 10.1021/bi00189a003 10.1080/07391102.1989.10508505 |
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References | Larsen (10.1016/j.bbagen.2007.08.018_bib24) 1989; 7 Wilson (10.1016/j.bbagen.2007.08.018_bib27) 1990; 29 Selander (10.1016/j.bbagen.2007.08.018_bib40) 1973; 131 Satyanarayana (10.1016/j.bbagen.2007.08.018_bib52) 1993; 32 Wang (10.1016/j.bbagen.2007.08.018_bib6) 1995; 2 Storl (10.1016/j.bbagen.2007.08.018_bib17) 1993; 317 Ray (10.1016/j.bbagen.2007.08.018_bib34) 1996; 26 Suresh Kumar (10.1016/j.bbagen.2007.08.018_bib38) 2003; 11 Zhao (10.1016/j.bbagen.2007.08.018_bib11) 1994; 34 McGhee (10.1016/j.bbagen.2007.08.018_bib33) 1974; 86 Ihmels (10.1016/j.bbagen.2007.08.018_bib31) 2005; 81 Gallego (10.1016/j.bbagen.2007.08.018_bib3) 2001; 34 Larsson (10.1016/j.bbagen.2007.08.018_bib35) 1994; 116 Sinha (10.1016/j.bbagen.2007.08.018_bib13) 2006; 18 Manzini (10.1016/j.bbagen.2007.08.018_bib43) 1985; 13 Lacy (10.1016/j.bbagen.2007.08.018_bib51) 2004; 32 Murphy (10.1016/j.bbagen.2007.08.018_bib47) 2000; 8 Wilson (10.1016/j.bbagen.2007.08.018_bib29) 1989; 111 Pilipenko (10.1016/j.bbagen.2007.08.018_bib12) 1990; 18 Chiang (10.1016/j.bbagen.2007.08.018_bib23) 1994; 33 Trotta (10.1016/j.bbagen.2007.08.018_bib26) 1996; 271 Tor (10.1016/j.bbagen.2007.08.018_bib1) 2003; 4 Zapp (10.1016/j.bbagen.2007.08.018_bib4) 1997; 5 Freyer (10.1016/j.bbagen.2007.08.018_bib46) 2007; 126 Straney (10.1016/j.bbagen.2007.08.018_bib22) 1987; 26 Stuhlmeier (10.1016/j.bbagen.2007.08.018_bib16) 2001; 1524 Mc Connaughie (10.1016/j.bbagen.2007.08.018_bib9) 1994; 37 Nafishi (10.1016/j.bbagen.2007.08.018_bib53) 2007; 827 Bartel (10.1016/j.bbagen.2007.08.018_bib2) 2004; 116 Tanious (10.1016/j.bbagen.2007.08.018_bib10) 1992; 31 Ren (10.1016/j.bbagen.2007.08.018_bib50) 2000; 39 Ha (10.1016/j.bbagen.2007.08.018_bib49) 1989; 209 Bhadra (10.1016/j.bbagen.2007.08.018_bib32) 2007; 1770 Palu (10.1016/j.bbagen.2007.08.018_bib18) 1987; 145 Rivas (10.1016/j.bbagen.2007.08.018_bib15) 2000; 18 O'Brien (10.1016/j.bbagen.2007.08.018_bib44) 2004 Szabo (10.1016/j.bbagen.2007.08.018_bib41) 1986; 44 Welch (10.1016/j.bbagen.2007.08.018_bib20) 1994; 269 Hermann (10.1016/j.bbagen.2007.08.018_bib5) 1998; 276 Trotta (10.1016/j.bbagen.2007.08.018_bib25) 1993; 268 Giri (10.1016/j.bbagen.2007.08.018_bib36) 2007; 1770 Parolin (10.1016/j.bbagen.2007.08.018_bib19) 1995; 208 Lyng (10.1016/j.bbagen.2007.08.018_bib42) 1982; 26 Wilson (10.1016/j.bbagen.2007.08.018_bib28) 1990; 5 Saenger (10.1016/j.bbagen.2007.08.018_bib37) 1984 Wilson (10.1016/j.bbagen.2007.08.018_bib8) 1993; 32 Parolin (10.1016/j.bbagen.2007.08.018_bib21) 1990; 56 Huan (10.1016/j.bbagen.2007.08.018_bib39) 1977; 459 Gardner (10.1016/j.bbagen.2007.08.018_bib14) 2001; 14 Chaires (10.1016/j.bbagen.2007.08.018_bib48) 1998; 44 Islam (10.1016/j.bbagen.2007.08.018_bib45) 2007; 125 Vicens (10.1016/j.bbagen.2007.08.018_bib7) 2003; 4 Trotta (10.1016/j.bbagen.2007.08.018_bib30) 1995; 23 |
References_xml | – volume: 14 start-page: 114 year: 2001 ident: 10.1016/j.bbagen.2007.08.018_bib14 article-title: Treatment of giardiasis publication-title: Clin. Microbiol. Rev. doi: 10.1128/CMR.14.1.114-128.2001 – volume: 317 start-page: 157 year: 1993 ident: 10.1016/j.bbagen.2007.08.018_bib17 article-title: Minor-groove binders are inhibitors of the catalytic activity of DNA gyrases publication-title: FEBS Lett. doi: 10.1016/0014-5793(93)81513-Y – volume: 44 start-page: 143 year: 1986 ident: 10.1016/j.bbagen.2007.08.018_bib41 article-title: Excited state pKa behaviour of DAPI. A rationalization of the fluorescence enhancement of DAPI in DAPI-nucleic acid complexes publication-title: Photochem. Photobiol. doi: 10.1111/j.1751-1097.1986.tb03578.x – volume: 11 start-page: 4861 year: 2003 ident: 10.1016/j.bbagen.2007.08.018_bib38 article-title: Protonated forms of poly[d(G-C)] and poly(dG)·poly(dC) and their interaction with berberine publication-title: Bioorg. Med. Chem. doi: 10.1016/j.bmc.2003.09.028 – volume: 827 start-page: 35 year: 2007 ident: 10.1016/j.bbagen.2007.08.018_bib53 article-title: Stability and structural features of DNA intercalation with ethidium bromide, acridine orange and methylene blue publication-title: J. Mol. Struct. doi: 10.1016/j.molstruc.2006.05.004 – volume: 39 start-page: 8439 year: 2000 ident: 10.1016/j.bbagen.2007.08.018_bib50 article-title: Energetics of DNA intercalation reactions publication-title: Biochemistry doi: 10.1021/bi000474a – volume: 32 start-page: 2573 year: 1993 ident: 10.1016/j.bbagen.2007.08.018_bib52 article-title: Tris(Phenanthroline) ruthenium(II) enantiomer interactions with DNA: mode and specificity of binding publication-title: Biochemistry doi: 10.1021/bi00061a015 – volume: 8 start-page: R83 year: 2000 ident: 10.1016/j.bbagen.2007.08.018_bib47 article-title: Nonsequence-specific DNA recognition: a structural perspective publication-title: Structure doi: 10.1016/S0969-2126(00)00126-X – volume: 268 start-page: 3944 year: 1993 ident: 10.1016/j.bbagen.2007.08.018_bib25 article-title: 1H NMR study of [d(GCGATCGC)]2 and its interaction with minor groove binding 4′,6-diamidino-2-phenylindole publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(18)53563-8 – volume: 111 start-page: 5008 year: 1989 ident: 10.1016/j.bbagen.2007.08.018_bib29 article-title: Binding of 4′,6-diamidino-2-phenylindole (DAPI) to GC and mixed sequences in DNA: Intercalation of a classical groove-binding molecule publication-title: J. Am. Chem. Soc. doi: 10.1021/ja00195a080 – volume: 32 start-page: 2000 year: 2004 ident: 10.1016/j.bbagen.2007.08.018_bib51 article-title: Energetic basis for selective recognition of T⁎G mismatched base pairs in DNA by imidazole-rich polyamides publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkh515 – volume: 4 start-page: 1018 year: 2003 ident: 10.1016/j.bbagen.2007.08.018_bib7 article-title: RNA as a drug target: the case of aminoglycosides publication-title: Chem. Biochem. – volume: 2 start-page: 281 year: 1995 ident: 10.1016/j.bbagen.2007.08.018_bib6 article-title: Specific binding of aminoglycoside antibiotics to RNA publication-title: Chem. Biol. doi: 10.1016/1074-5521(95)90047-0 – year: 1984 ident: 10.1016/j.bbagen.2007.08.018_bib37 – volume: 276 start-page: 903 year: 1998 ident: 10.1016/j.bbagen.2007.08.018_bib5 article-title: Aminoglycoside binding to the hammerhead ribozyme: a general model for the interaction of cationic antibiotics with RNA publication-title: J. Mol. Biol. doi: 10.1006/jmbi.1997.1590 – volume: 209 start-page: 801 year: 1989 ident: 10.1016/j.bbagen.2007.08.018_bib49 article-title: Role of the hydrophobic effect in stability of site-specific protein–DNA complexes publication-title: J. Mol. Biol. doi: 10.1016/0022-2836(89)90608-6 – volume: 131 start-page: 749 year: 1973 ident: 10.1016/j.bbagen.2007.08.018_bib40 article-title: Interaction of quinacrine mustard with mononucleotides and polynucleotides publication-title: Biochem. J. doi: 10.1042/bj1310749 – volume: 56 start-page: 341 year: 1990 ident: 10.1016/j.bbagen.2007.08.018_bib21 article-title: The effect of the minor groove binding agent DAPI (4,6-diamidino-2-phenyl-indole) on DNA-directed enzymes: an attempt to explain inhibition of plasmid expression in Escherichia coli publication-title: FEMS Microbiol. Lett. – volume: 44 start-page: 201 year: 1998 ident: 10.1016/j.bbagen.2007.08.018_bib48 article-title: Energetics of drug–DNA interactions publication-title: Biopolymers doi: 10.1002/(SICI)1097-0282(1997)44:3<201::AID-BIP2>3.0.CO;2-Z – volume: 26 start-page: 1987 year: 1987 ident: 10.1016/j.bbagen.2007.08.018_bib22 article-title: Effect of drug–DNA interactions upon transcription initiation at the lac promoter publication-title: Biochemistry doi: 10.1021/bi00381a031 – volume: 18 start-page: 800 year: 2006 ident: 10.1016/j.bbagen.2007.08.018_bib13 article-title: The binding of DNA intercalating and non-intercalating compounds to A-form and protonated form of poly(rC)·poly(rG): Spectroscopic and viscometric study publication-title: Bioorg. Med. Chem. doi: 10.1016/j.bmc.2005.09.007 – volume: 1770 start-page: 1071 year: 2007 ident: 10.1016/j.bbagen.2007.08.018_bib32 article-title: Molecular recognition of DNA by small molecules: AT base pair specific intercalative binding of cytotoxic plant alkaloid palmatine publication-title: Biochim. Biophys. Acta doi: 10.1016/j.bbagen.2007.03.001 – volume: 271 start-page: 27608 year: 1996 ident: 10.1016/j.bbagen.2007.08.018_bib26 article-title: Simultaneous and different binding mechanisms of 4′,6-diamidino-2-phenylindole to DNA hexamer (d(CGATCG))2. A 1H NMR study publication-title: J. Biol. Chem. doi: 10.1074/jbc.271.44.27608 – volume: 29 start-page: 8452 year: 1990 ident: 10.1016/j.bbagen.2007.08.018_bib27 article-title: DNA sequence dependent binding modes of 4′,6-diamidino-2-phenylindole (DAPI) publication-title: Biochemistry doi: 10.1021/bi00488a036 – volume: 126 start-page: 186 year: 2007 ident: 10.1016/j.bbagen.2007.08.018_bib46 article-title: Binding of netropsin to several DNA constructs: evidence for at least two different 1:1 complexes formed from an -AATT-containing ds-DNA construct and a single minor groove binding ligand publication-title: Biophys. Chemist. doi: 10.1016/j.bpc.2006.06.009 – volume: 5 start-page: 1149 year: 1997 ident: 10.1016/j.bbagen.2007.08.018_bib4 article-title: Modulation of the rev-RRE interaction by aromatic heterocyclic compounds publication-title: Bioorg. Med. Chem. doi: 10.1016/S0968-0896(97)00063-1 – volume: 32 start-page: 4098 year: 1993 ident: 10.1016/j.bbagen.2007.08.018_bib8 article-title: The search for structure-specific nucleic acid-interactive drugs: effects of compound structure on RNA versus DNA interaction strength publication-title: Biochemistry doi: 10.1021/bi00066a035 – volume: 125 start-page: 508 year: 2007 ident: 10.1016/j.bbagen.2007.08.018_bib45 article-title: RNA binding small molecules: study on t-RNA binding by cytotoxic plant alkaloids berberine, palmatine and comparison to ethidium publication-title: Biophys. Chemist. doi: 10.1016/j.bpc.2006.11.001 – volume: 31 start-page: 3103 year: 1992 ident: 10.1016/j.bbagen.2007.08.018_bib10 article-title: DAPI (4′,6-diamidino-2-phenylindole) binds differently to DNA and RNA: minor-groove binding at AT sites and intercalation at AU sites publication-title: Biochemistry doi: 10.1021/bi00127a010 – volume: 13 start-page: 8955 year: 1985 ident: 10.1016/j.bbagen.2007.08.018_bib43 article-title: Interaction of DAPI with double-stranded ribonucleic acids publication-title: Nucleic Acids Res. doi: 10.1093/nar/13.24.8955 – volume: 18 start-page: 3371 year: 1990 ident: 10.1016/j.bbagen.2007.08.018_bib12 article-title: Gross rearrangements within the 5′-untranslated region of the picornaviral genomes publication-title: Nucleic Acids Res. doi: 10.1093/nar/18.11.3371 – volume: 1524 start-page: 57 year: 2001 ident: 10.1016/j.bbagen.2007.08.018_bib16 article-title: Effects of quinacrine on endothelial cell morphology and transcription factor-DNA interactions publication-title: Biochim. Biophys. Acta doi: 10.1016/S0304-4165(00)00140-9 – volume: 208 start-page: 332 year: 1995 ident: 10.1016/j.bbagen.2007.08.018_bib19 article-title: A model for the sequence-dependent DNA binding of 4′,6-diamidino-2-phenylindole (DAPI) publication-title: Biochem. Biophys. Res. Commun. doi: 10.1006/bbrc.1995.1342 – volume: 5 start-page: 31 year: 1990 ident: 10.1016/j.bbagen.2007.08.018_bib28 article-title: The interaction of unfused polyaromatic heterocycles with DNA: intercalation, groove-binding and bleomycin amplification publication-title: Anticancer Drug Des. – year: 2004 ident: 10.1016/j.bbagen.2007.08.018_bib44 article-title: Applications of biocalorimetry: binding, stability and enzyme kinetics – volume: 4 start-page: 998 year: 2003 ident: 10.1016/j.bbagen.2007.08.018_bib1 article-title: Targeting RNA with small molecules publication-title: Chem. Biochem. – volume: 26 start-page: 497 year: 1996 ident: 10.1016/j.bbagen.2007.08.018_bib34 article-title: Scatplot: a computer program for determination of binding parameters of non-linear non-cooperative ligand-substrate interactions publication-title: Comput. Biol. Med. doi: 10.1016/S0010-4825(96)00034-0 – volume: 1770 start-page: 1419 year: 2007 ident: 10.1016/j.bbagen.2007.08.018_bib36 article-title: Specific binding and self-structure induction to poly(A) by the cytotoxic plant alkaloid sanguinarine publication-title: Biochim. Biophys. Acta doi: 10.1016/j.bbagen.2007.05.005 – volume: 459 start-page: 241 year: 1977 ident: 10.1016/j.bbagen.2007.08.018_bib39 article-title: Energy-linked protonation of quinacrine in beef heart submitochondrial membranes publication-title: Biochim. Biophys. Acta doi: 10.1016/0005-2728(77)90025-1 – volume: 34 start-page: 836 year: 2001 ident: 10.1016/j.bbagen.2007.08.018_bib3 article-title: Targeting RNA with small-molecule drugs: therapeutic promise and chemical challenges publication-title: Acc. Chem. Res. doi: 10.1021/ar000118k – volume: 34 start-page: 61 year: 1994 ident: 10.1016/j.bbagen.2007.08.018_bib11 article-title: The interaction of substituted 2-phenylquinoline intercalators with poly(A)·poly(U): classical and threading intercalation modes with RNA publication-title: Biopolymers doi: 10.1002/bip.360340108 – volume: 269 start-page: 31051 year: 1994 ident: 10.1016/j.bbagen.2007.08.018_bib20 article-title: Targeting DNA-binding drugs to sequence-specific transcription factor-DNA complexes. Differential effects of intercalating and minor groove binding drugs publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(18)47389-9 – volume: 81 start-page: 1107 year: 2005 ident: 10.1016/j.bbagen.2007.08.018_bib31 article-title: Intercalation of organic dye molecules into double-stranded DNA: Part 2. The annelated quinolizinium ion as a structural motif in DNA intercalators publication-title: Photochem. Photobiol. doi: 10.1562/2005-01-25-IR-427 – volume: 37 start-page: 1063 year: 1994 ident: 10.1016/j.bbagen.2007.08.018_bib9 article-title: Design and synthesis of RNA-specific groove-binding cations: implications for antiviral drug design publication-title: J. Med. Chem. doi: 10.1021/jm00034a004 – volume: 26 start-page: 1327 year: 1982 ident: 10.1016/j.bbagen.2007.08.018_bib42 article-title: Induced CD of DNA intercalators: electric dipole allowed transitions publication-title: Biopolymers doi: 10.1002/bip.360260809 – volume: 145 start-page: 40 year: 1987 ident: 10.1016/j.bbagen.2007.08.018_bib18 article-title: DAPI-pUC8 complex: a tool to investigate biological effects of nucleic acid-drug interaction publication-title: Biochem. Biophys. Res. Commun. doi: 10.1016/0006-291X(87)91284-8 – volume: 23 start-page: 1333 year: 1995 ident: 10.1016/j.bbagen.2007.08.018_bib30 article-title: Evidence for DAPI intercalation in CG sites of DNA oligomer [d(CGACGTCG)]2: a 1H NMR study publication-title: Nucleic Acids Res. doi: 10.1093/nar/23.8.1333 – volume: 18 start-page: 371 year: 2000 ident: 10.1016/j.bbagen.2007.08.018_bib15 article-title: Interaction of antimalarial drug quinacrine with nucleic acids of variable sequence studied by spectroscopic methods publication-title: J. Biomol. Struct. Dyn. doi: 10.1080/07391102.2000.10506674 – volume: 116 start-page: 281 year: 2004 ident: 10.1016/j.bbagen.2007.08.018_bib2 article-title: Micro RNAs: genomics, biogenesis, mechanism, and function publication-title: Cell doi: 10.1016/S0092-8674(04)00045-5 – volume: 116 start-page: 8459 year: 1994 ident: 10.1016/j.bbagen.2007.08.018_bib35 article-title: Characterization of the binding of the fluorescent dyes YO and YOYO to DNA by polarized light spectroscopy publication-title: J. Am. Chem. Soc. doi: 10.1021/ja00098a004 – volume: 86 start-page: 469 year: 1974 ident: 10.1016/j.bbagen.2007.08.018_bib33 article-title: Theoretical aspects of DNA-protein interactions: cooperative and non-cooperative binding of large ligands to one dimensional homogeneous lattice publication-title: J. Mol. Biol. doi: 10.1016/0022-2836(74)90031-X – volume: 33 start-page: 7033 year: 1994 ident: 10.1016/j.bbagen.2007.08.018_bib23 article-title: Effects of minor groove binding drugs on the interaction of TATA box binding protein and TFIIA with DNA publication-title: Biochemistry doi: 10.1021/bi00189a003 – volume: 7 start-page: 477 year: 1989 ident: 10.1016/j.bbagen.2007.08.018_bib24 article-title: The structure of DAPI bound to DNA publication-title: J. Biomol. Struct. Dyn. doi: 10.1080/07391102.1989.10508505 |
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