Landscape of KRAS G12C , Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS -Mutated Cancers
Promising single-agent activity from sotorasib and adagrasib in -mutant tumors has provided clinical evidence of effective KRAS signaling inhibition. However, comprehensive analysis of -variant prevalence, genomic alterations, and the relationship between and immuno-oncology biomarkers is lacking. R...
Saved in:
Published in | JCO precision oncology Vol. 6; p. e2100245 |
---|---|
Main Authors | , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
United States
01.05.2022
|
Subjects | |
Online Access | Get more information |
Cover
Loading…
Abstract | Promising single-agent activity from sotorasib and adagrasib in
-mutant tumors has provided clinical evidence of effective KRAS signaling inhibition. However, comprehensive analysis of
-variant prevalence, genomic alterations, and the relationship between
and immuno-oncology biomarkers is lacking.
Retrospective analysis of deidentified records from 79,004 patients with various cancers who underwent next-generation sequencing was performed. Fisher's exact test evaluated the association between cancer subtypes and
variants. Logistic regression assessed
comutations with other oncogenes and the association between
variants and immuno-oncology biomarkers.
Of the 79,004 samples assessed, 13,758 (17.4%) harbored
mutations, with 1,632 (11.9%) harboring
and 12,126 (88.1%) harboring other
variants (
). Compared with
across all tumor subtypes,
was more prevalent in females (56%
51%, false discovery rate-adjusted
value [FDR-
] = .0006), current or prior smokers (85%
56%, FDR-
< .0001), and patients age > 60 years (73%
63%, FDR-
≤ .0001). The most frequent
variants across all subtypes were G12D (29.5%), G12V (23.0%), G12C (11.9%), G13D (6.5%), and G12R (6.2%).
was most prevalent in patients with non-small-cell lung cancer (9%), appendiceal (3.9%), colorectal (3.2%), tumor of unknown origin (1.6%), small bowel (1.43%), and pancreatic (1.3%) cancers. Compared with
-mutated,
-mutated tumors were significantly associated with tumor mutational burden-high status (17.9%
8.4%, odds ratio [OR] = 2.38; FDR-
< .0001).
-mutated tumors exhibited a distinct comutation profile from
-mutated tumors, including higher comutations of
(20.59%
5.95%, OR = 4.10; FDR-
< .01) and
(15.38%
4.61%, OR = 3.76; FDR-
< .01).
This study presents the first large-scale, pan-cancer genomic characterization of
. The
mutation was more prevalent in females and older patients and appeared to be associated with smoking status.
tumors exhibited a distinct comutation profile and were associated with tumor mutational burden-high status. |
---|---|
AbstractList | Promising single-agent activity from sotorasib and adagrasib in
-mutant tumors has provided clinical evidence of effective KRAS signaling inhibition. However, comprehensive analysis of
-variant prevalence, genomic alterations, and the relationship between
and immuno-oncology biomarkers is lacking.
Retrospective analysis of deidentified records from 79,004 patients with various cancers who underwent next-generation sequencing was performed. Fisher's exact test evaluated the association between cancer subtypes and
variants. Logistic regression assessed
comutations with other oncogenes and the association between
variants and immuno-oncology biomarkers.
Of the 79,004 samples assessed, 13,758 (17.4%) harbored
mutations, with 1,632 (11.9%) harboring
and 12,126 (88.1%) harboring other
variants (
). Compared with
across all tumor subtypes,
was more prevalent in females (56%
51%, false discovery rate-adjusted
value [FDR-
] = .0006), current or prior smokers (85%
56%, FDR-
< .0001), and patients age > 60 years (73%
63%, FDR-
≤ .0001). The most frequent
variants across all subtypes were G12D (29.5%), G12V (23.0%), G12C (11.9%), G13D (6.5%), and G12R (6.2%).
was most prevalent in patients with non-small-cell lung cancer (9%), appendiceal (3.9%), colorectal (3.2%), tumor of unknown origin (1.6%), small bowel (1.43%), and pancreatic (1.3%) cancers. Compared with
-mutated,
-mutated tumors were significantly associated with tumor mutational burden-high status (17.9%
8.4%, odds ratio [OR] = 2.38; FDR-
< .0001).
-mutated tumors exhibited a distinct comutation profile from
-mutated tumors, including higher comutations of
(20.59%
5.95%, OR = 4.10; FDR-
< .01) and
(15.38%
4.61%, OR = 3.76; FDR-
< .01).
This study presents the first large-scale, pan-cancer genomic characterization of
. The
mutation was more prevalent in females and older patients and appeared to be associated with smoking status.
tumors exhibited a distinct comutation profile and were associated with tumor mutational burden-high status. |
Author | Puccini, Alberto Van Cutsem, Eric Musselwhite, Laura W Kadakia, Kunal C Tie, Jeanne Tabernero, Josep George, Thomas J Grothey, Axel Barrett, Alexander S Sha, Wei Raghavan, Derek El-Refai, Sherif M O'Neil, Bert Salem, Mohamed E Hwang, Jimmy J |
Author_xml | – sequence: 1 givenname: Mohamed E surname: Salem fullname: Salem, Mohamed E organization: Levine Cancer Institute, Atrium Health, Charlotte, NC – sequence: 2 givenname: Sherif M orcidid: 0000-0003-2080-4172 surname: El-Refai fullname: El-Refai, Sherif M organization: Tempus Labs Inc, Chicago, IL – sequence: 3 givenname: Wei surname: Sha fullname: Sha, Wei organization: Levine Cancer Institute, Atrium Health, Charlotte, NC – sequence: 4 givenname: Alberto orcidid: 0000-0002-2492-4043 surname: Puccini fullname: Puccini, Alberto organization: University of Genoa, Ospedale Policlinico San Martino IRCCS, Genoa, Italy – sequence: 5 givenname: Axel surname: Grothey fullname: Grothey, Axel organization: West Cancer Center, Germantown, TN – sequence: 6 givenname: Thomas J orcidid: 0000-0002-6249-9180 surname: George fullname: George, Thomas J organization: University of Florida, Gainesville, FL – sequence: 7 givenname: Jimmy J surname: Hwang fullname: Hwang, Jimmy J organization: Levine Cancer Institute, Atrium Health, Charlotte, NC – sequence: 8 givenname: Bert surname: O'Neil fullname: O'Neil, Bert organization: Tempus Labs Inc, Chicago, IL – sequence: 9 givenname: Alexander S surname: Barrett fullname: Barrett, Alexander S organization: Tempus Labs Inc, Chicago, IL – sequence: 10 givenname: Kunal C orcidid: 0000-0003-3574-4141 surname: Kadakia fullname: Kadakia, Kunal C organization: Levine Cancer Institute, Atrium Health, Charlotte, NC – sequence: 11 givenname: Laura W surname: Musselwhite fullname: Musselwhite, Laura W organization: Levine Cancer Institute, Atrium Health, Charlotte, NC – sequence: 12 givenname: Derek orcidid: 0000-0002-7358-3994 surname: Raghavan fullname: Raghavan, Derek organization: Levine Cancer Institute, Atrium Health, Charlotte, NC – sequence: 13 givenname: Eric orcidid: 0000-0002-6372-1230 surname: Van Cutsem fullname: Van Cutsem, Eric organization: University Hospitals Gasthuisberg, Leuven & KULeuven, Leuven, Belgium – sequence: 14 givenname: Josep orcidid: 0000-0002-2495-8139 surname: Tabernero fullname: Tabernero, Josep organization: Vall d'Hebron Hospital Campus and Institute of Oncology (VHIO), IOB-Quiron, UVic-UCC, Barcelona, Spain – sequence: 15 givenname: Jeanne orcidid: 0000-0001-9244-2057 surname: Tie fullname: Tie, Jeanne organization: Walter + Eliza Hall Institute of Medical Research, Melbourne, Australia |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/35319967$$D View this record in MEDLINE/PubMed |
BookMark | eNo1kMtOwzAQRS0EolC6Yo_8AU2xJ06cLEMEpaKoiIdYVo4zAUNiV3G66Jofx2phNdIZ3YfuOTm2ziIhl5zNODB2_bSaAZ8xBiI5ImcgZBwJyMSITLz_YoHHHLhMT8koTmKe56k8Iz9LZWuv1Qapa-jDc_FC5xxKOqWF904bNWBN52hdZzQt2gF7NRhn_ZQGHV3YAHps94y-m-GTLrpua120stq17mNHb4zrVP-NvafGHgKix-2w9y2V1eFxQU4a1Xqc_N0xebu7fS3vo-VqviiLZaQ54zJqUoy1TGXG85SzptIAMQihMNeCawYVgtJKZUlVCakTltQsa1KokwAx6GBMrg6-m23VYb3e9CZU263_14BfpvVgyw |
CitedBy_id | crossref_primary_10_3390_cimb45030135 crossref_primary_10_3390_cancers14194828 crossref_primary_10_1016_j_ctrv_2024_102721 crossref_primary_10_1200_JCO_23_00434 crossref_primary_10_1186_s12967_023_04430_x crossref_primary_10_1016_j_lungcan_2023_107293 crossref_primary_10_2217_fon_2022_1106 crossref_primary_10_3390_cancers16081447 crossref_primary_10_1158_1078_0432_CCR_22_3655 crossref_primary_10_1038_s41575_022_00736_1 crossref_primary_10_3390_cancers15205015 crossref_primary_10_1016_j_lungcan_2022_09_014 crossref_primary_10_1016_j_lungcan_2023_02_021 crossref_primary_10_3389_fmed_2024_1369136 crossref_primary_10_1016_j_cllc_2022_07_005 crossref_primary_10_1158_1535_7163_MCT_22_0810 crossref_primary_10_7759_cureus_27090 crossref_primary_10_1007_s00108_023_01651_6 crossref_primary_10_1186_s12964_023_01063_x crossref_primary_10_1080_17512433_2022_2138339 crossref_primary_10_1038_s41591_024_02903_0 crossref_primary_10_1200_EDBK_438466 crossref_primary_10_3390_jcm11144098 crossref_primary_10_3389_fonc_2024_1357898 crossref_primary_10_1002_jlcr_4079 crossref_primary_10_3390_cancers14215430 crossref_primary_10_1186_s12014_023_09435_8 crossref_primary_10_1038_s41698_022_00334_z crossref_primary_10_1177_17588359231216090 crossref_primary_10_1080_17474124_2024_2322648 crossref_primary_10_3390_cancers16051029 crossref_primary_10_1080_17476348_2023_2265810 |
ContentType | Journal Article |
DBID | CGR CUY CVF ECM EIF NPM |
DOI | 10.1200/PO.21.00245 |
DatabaseName | Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed |
DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) |
DatabaseTitleList | MEDLINE |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
DeliveryMethod | no_fulltext_linktorsrc |
EISSN | 2473-4284 |
ExternalDocumentID | 35319967 |
Genre | Journal Article |
GroupedDBID | 0R~ 53G ABDBF ALMA_UNASSIGNED_HOLDINGS C45 CGR CUY CVF EBS ECM EIF FBNNL H13 NPM O9- OVD RLZ RUC TEORI |
ID | FETCH-LOGICAL-c1017-f6e3c767819610fbc223244ae9c41c02be2acaa85bb47c505d08f62d5caae7672 |
IngestDate | Sat Sep 28 08:18:43 EDT 2024 |
IsPeerReviewed | true |
IsScholarly | true |
Language | English |
LinkModel | OpenURL |
MergedId | FETCHMERGED-LOGICAL-c1017-f6e3c767819610fbc223244ae9c41c02be2acaa85bb47c505d08f62d5caae7672 |
ORCID | 0000-0002-6249-9180 0000-0002-2492-4043 0000-0002-2495-8139 0000-0001-9244-2057 0000-0002-7358-3994 0000-0003-2080-4172 0000-0003-3574-4141 0000-0002-6372-1230 |
PMID | 35319967 |
ParticipantIDs | pubmed_primary_35319967 |
PublicationCentury | 2000 |
PublicationDate | 2022-05-00 |
PublicationDateYYYYMMDD | 2022-05-01 |
PublicationDate_xml | – month: 05 year: 2022 text: 2022-05-00 |
PublicationDecade | 2020 |
PublicationPlace | United States |
PublicationPlace_xml | – name: United States |
PublicationTitle | JCO precision oncology |
PublicationTitleAlternate | JCO Precis Oncol |
PublicationYear | 2022 |
SSID | ssj0002312176 |
Score | 2.2328765 |
Snippet | Promising single-agent activity from sotorasib and adagrasib in
-mutant tumors has provided clinical evidence of effective KRAS signaling inhibition. However,... |
SourceID | pubmed |
SourceType | Index Database |
StartPage | e2100245 |
SubjectTerms | Acetonitriles Biomarkers, Tumor - genetics Carcinoma, Non-Small-Cell Lung - genetics Female Genomics Humans Kelch-Like ECH-Associated Protein 1 Lung Neoplasms - genetics Middle Aged NF-E2-Related Factor 2 Piperazines Proto-Oncogene Proteins p21(ras) - genetics Pyrimidines Retrospective Studies |
Title | Landscape of KRAS G12C , Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS -Mutated Cancers |
URI | https://www.ncbi.nlm.nih.gov/pubmed/35319967 |
Volume | 6 |
hasFullText | |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LT9wwELYWKlVcqlZ90Zd86G3xNnGcOHtcVhT6YisKKjcUG1ukggStsheu_BD-KjO2k023tGp7SBTZsWN5Pk9m7HkQ8jZTiRQ2Myy1qWQiNxFTKkuZimyWSatTuNDaYj_bOxIfj9PjweCmZ7W0aNRIX93pV_I_VIUyoCt6yf4DZbtOoQCegb5wBwrD_a9o_Bn9dNGCCUW-TweTb8PdGKbMrfcw7SBP7hrnejycnLsIyjia1mbT7QfOgz0ccIjmbPgBHUZqNqu0j860XdYXaMIzd4az7iPsy6JxPU8RMuE4qBVwpzOMO-AT9wzr0Eu3jwO_I78HW58V8B9e-kHsnLMDY31ubAwXWdpepmN_KPXdlB0jX2hdumRUeMZg5k3d370AxbezFRwZx-W4kAkDHUj0WXKfpRoeu_PhO_k9d6msv85GPB798hYQ6_LCkT5BTjP2eT_-XLsSfLutWiNrMsfMIPthM-iHixQUg0KXBa9PGMq73kA2yP228YrG4iSXw4fkQVA56MTj5xEZmOoxue6wQ2tLkawUsUO36BI5NCCH9pCzRaEd_Qk3FHFDV3BDl7ihZeU_0OKGBtw8IUfvdw6neywk5GAaOTeDNZ1oCeINsO04skpzlMdFYcZaxDriyvBCF0WeKiWkBtn6NMptxk9TKDTQjj8l61VdmeeEKhXbRCqbFnkmIiFybiXnoKsIkRo-lpvkmZ-zk0sfdeWknc0Xv615STaWEHtF7llY5uY1yIyNeuModwt6s2ly |
link.rule.ids | 780 |
linkProvider | National Library of Medicine |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Landscape+of+KRAS+G12C+%2C+Associated+Genomic+Alterations%2C+and+Interrelation+With+Immuno-Oncology+Biomarkers+in+KRAS+-Mutated+Cancers&rft.jtitle=JCO+precision+oncology&rft.au=Salem%2C+Mohamed+E&rft.au=El-Refai%2C+Sherif+M&rft.au=Sha%2C+Wei&rft.au=Puccini%2C+Alberto&rft.date=2022-05-01&rft.eissn=2473-4284&rft.volume=6&rft.spage=e2100245&rft_id=info:doi/10.1200%2FPO.21.00245&rft_id=info%3Apmid%2F35319967&rft_id=info%3Apmid%2F35319967&rft.externalDocID=35319967 |