Plann: A Command-Line Application for Annotating Plastome Sequences

• Published in: Applications in plant sciences Vol. 3; no. 8
• Main Authors: Huang, Daisie I, Cronk, Quentin C. B
• Format: Journal Article
• Language: English
• Published: United States Botanical Society of America 01.08.2015; John Wiley & Sons, Inc
• Subjects: Annotations; Automation; Biotechnology; chloroplast; computer software; GenBank; Genes; genetic databases; genome annotation; Genomes; Internet; Mutation; National Center for Biotechnology Information; Phylogenetics; Phylogeography; pipelines; Plant sciences; plastome; Sequin; SOFTWARE NOTE; chloroplast; plastome; genome annotation; GenBank; Sequin

Premise of the study: Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission by annotating a new plastome based on a similar, well-annotated plastome. Methods and Results: Plann is a Perl script to be executed on the...