Plann: A Command-Line Application for Annotating Plastome Sequences
Premise of the study: Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission by annotating a new plastome based on a similar, well-annotated plastome. Methods and Results: Plann is a Perl script to be executed on the...
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| Published in | Applications in plant sciences Vol. 3; no. 8 |
|---|---|
| Main Authors | , |
| Format | Journal Article |
| Language | English |
| Published |
United States
Botanical Society of America
01.08.2015
John Wiley & Sons, Inc |
| Subjects | |
| Online Access | Get full text |
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| Abstract | Premise of the study: Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission by annotating a new plastome based on a similar, well-annotated plastome. Methods and Results: Plann is a Perl script to be executed on the command line. Plann compares a new plastome sequence to the features annotated in a reference plastome and then shifts the intervals of any matching features to the locations in the new plastome. Plann's output can be used in the National Center for Biotechnology Information's tbl2asn to create a Sequin file for GenBank submission. Conclusions: Unlike Web-based annotation packages, Plann is a locally executable script that will accurately annotate a plastome sequence to a locally specified reference plastome. Because it executes from the command line, it is ready to use in other software pipelines and can be easily rerun as a draft plastome is improved. |
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| AbstractList | PREMISE OF THE STUDYPlann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission by annotating a new plastome based on a similar, well-annotated plastome.METHODS AND RESULTSPlann is a Perl script to be executed on the command line. Plann compares a new plastome sequence to the features annotated in a reference plastome and then shifts the intervals of any matching features to the locations in the new plastome. Plann's output can be used in the National Center for Biotechnology Information's tbl2asn to create a Sequin file for GenBank submission.CONCLUSIONSUnlike Web-based annotation packages, Plann is a locally executable script that will accurately annotate a plastome sequence to a locally specified reference plastome. Because it executes from the command line, it is ready to use in other software pipelines and can be easily rerun as a draft plastome is improved. Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission by annotating a new plastome based on a similar, well-annotated plastome. Plann is a Perl script to be executed on the command line. Plann compares a new plastome sequence to the features annotated in a reference plastome and then shifts the intervals of any matching features to the locations in the new plastome. Plann's output can be used in the National Center for Biotechnology Information's tbl2asn to create a Sequin file for GenBank submission. Unlike Web-based annotation packages, Plann is a locally executable script that will accurately annotate a plastome sequence to a locally specified reference plastome. Because it executes from the command line, it is ready to use in other software pipelines and can be easily rerun as a draft plastome is improved. Premise of the study: Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission by annotating a new plastome based on a similar, well-annotated plastome. Methods and Results: Plann is a Perl script to be executed on the command line. Plann compares a new plastome sequence to the features annotated in a reference plastome and then shifts the intervals of any matching features to the locations in the new plastome. Plann's output can be used in the National Center for Biotechnology Information's tbl2asn to create a Sequin file for GenBank submission. Conclusions: Unlike Web-based annotation packages, Plann is a locally executable script that will accurately annotate a plastome sequence to a locally specified reference plastome. Because it executes from the command line, it is ready to use in other software pipelines and can be easily rerun as a draft plastome is improved. Premise of the study: Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission by annotating a new plastome based on a similar, well‐annotated plastome. Methods and Results: Plann is a Perl script to be executed on the command line. Plann compares a new plastome sequence to the features annotated in a reference plastome and then shifts the intervals of any matching features to the locations in the new plastome. Plann's output can be used in the National Center for Biotechnology Information's tbl2asn to create a Sequin file for GenBank submission. Conclusions: Unlike Web‐based annotation packages, Plann is a locally executable script that will accurately annotate a plastome sequence to a locally specified reference plastome. Because it executes from the command line, it is ready to use in other software pipelines and can be easily rerun as a draft plastome is improved. |
| Author | Huang, Daisie I Cronk, Quentin C. B |
| Author_xml | – sequence: 1 givenname: Daisie I surname: Huang fullname: Huang, Daisie I organization: Department of Botany, University of British Columbia, 3529-6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada – sequence: 2 givenname: Quentin C. B surname: Cronk fullname: Cronk, Quentin C. B organization: Department of Botany, University of British Columbia, 3529-6270 University Blvd., Vancouver, British Columbia V6T 1Z4, Canada |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26312193$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.3732/apps.1400062 10.1093/nar/gkn502 10.3732/ajb.1100570 10.1186/1471-2164-13-715 10.1093/bioinformatics/bth352 10.1111/nph.12560 10.1186/1471-2148-12-100 10.3732/ajb.1100335 10.1016/j.ympev.2012.08.026 10.1186/1741-7007-7-84 |
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| Keywords | chloroplast plastome genome annotation GenBank Sequin |
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| Notes | This contribution was written while D.I.H. was salaried via the Genome Canada Large‐Scale Applied Research Project (grant no. 168BIO: PIs Carl Douglas and Shawn Mansfield, University of British Columbia). Q.C.B.C. acknowledges support from the Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery Grants Program (grant no. RGPIN‐2014‐05820). ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 This contribution was written while D.I.H. was salaried via the Genome Canada Large-Scale Applied Research Project (grant no. 168BIO: PIs Carl Douglas and Shawn Mansfield, University of British Columbia). Q.C.B.C. acknowledges support from the Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery Grants Program (grant no. RGPIN-2014-05820). |
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| References | 2008; 36 2013; 201 2004; 20 2009; 7 2014; 2 2013; 66 2012; 13 2012; 12 2012; 99 e_1_2_4_10_1 e_1_2_4_11_1 e_1_2_4_3_1 e_1_2_4_2_1 e_1_2_4_5_1 e_1_2_4_4_1 e_1_2_4_7_1 e_1_2_4_6_1 e_1_2_4_9_1 e_1_2_4_8_1 22301895 - Am J Bot. 2012 Feb;99(2):320-9 22731878 - BMC Evol Biol. 2012 Jun 25;12:100 15180927 - Bioinformatics. 2004 Nov 22;20(17):3252-5 22174336 - Am J Bot. 2012 Feb;99(2):349-64 22982444 - Mol Phylogenet Evol. 2013 Jan;66(1):17-29 25506521 - Appl Plant Sci. 2014 Dec 04;2(12):null 23256920 - BMC Genomics. 2012 Dec 20;13:715 24245977 - New Phytol. 2014 Feb;201(3):1021-30 18753151 - Nucleic Acids Res. 2008 Nov;36(19):e122 19954512 - BMC Biol. 2009 Dec 02;7:84 |
| References_xml | – volume: 99 start-page: 320 year: 2012 end-page: 329 article-title: Ultra‐barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA publication-title: American Journal of Botany – volume: 99 start-page: 349 year: 2012 end-page: 364 article-title: Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics publication-title: American Journal of Botany – volume: 12 start-page: 100 year: 2012 article-title: Separating the wheat from the chaff: Mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae) publication-title: BMC Evolutionary Biology – volume: 36 start-page: e122 year: 2008 article-title: Multiplex sequencing of plant chloroplast genomes using Solexa sequencing‐by‐synthesis technology publication-title: Nucleic Acids Research – volume: 13 start-page: 715 year: 2012 article-title: CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences publication-title: BMC Genomics – volume: 20 start-page: 3252 year: 2004 end-page: 3255 article-title: Automatic annotation of organellar genomes with DOGMA publication-title: Bioinformatics – volume: 2 start-page: 1400062 year: 2014 article-title: Geneious! Simplified genome skimming methods for phylogenetic systematic studies: A case study in Oreocarya (Boraginaceae) publication-title: Applications in Plant Sciences – volume: 66 start-page: 17 year: 2013 end-page: 29 article-title: Insights into phytogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing publication-title: Molecular Phylogenetics and Evolution – volume: 7 start-page: 84 year: 2009 article-title: Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes publication-title: BMC Biology – volume: 201 start-page: 1021 year: 2013 end-page: 1030 article-title: Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: Neither from Jerusalem nor an artichoke publication-title: New Phytologist – ident: e_1_2_4_9_1 doi: 10.3732/apps.1400062 – ident: e_1_2_4_3_1 doi: 10.1093/nar/gkn502 – ident: e_1_2_4_4_1 doi: 10.3732/ajb.1100570 – ident: e_1_2_4_5_1 doi: 10.1186/1471-2164-13-715 – ident: e_1_2_4_11_1 doi: 10.1093/bioinformatics/bth352 – ident: e_1_2_4_2_1 doi: 10.1111/nph.12560 – ident: e_1_2_4_8_1 doi: 10.1186/1471-2148-12-100 – ident: e_1_2_4_10_1 doi: 10.3732/ajb.1100335 – ident: e_1_2_4_6_1 doi: 10.1016/j.ympev.2012.08.026 – ident: e_1_2_4_7_1 doi: 10.1186/1741-7007-7-84 – reference: 18753151 - Nucleic Acids Res. 2008 Nov;36(19):e122 – reference: 24245977 - New Phytol. 2014 Feb;201(3):1021-30 – reference: 22174336 - Am J Bot. 2012 Feb;99(2):349-64 – reference: 22731878 - BMC Evol Biol. 2012 Jun 25;12:100 – reference: 23256920 - BMC Genomics. 2012 Dec 20;13:715 – reference: 22301895 - Am J Bot. 2012 Feb;99(2):320-9 – reference: 22982444 - Mol Phylogenet Evol. 2013 Jan;66(1):17-29 – reference: 15180927 - Bioinformatics. 2004 Nov 22;20(17):3252-5 – reference: 25506521 - Appl Plant Sci. 2014 Dec 04;2(12):null – reference: 19954512 - BMC Biol. 2009 Dec 02;7:84 |
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| Snippet | Premise of the study: Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank... Premise of the study: Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank... Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission by annotating a new... Premise of the study:Plann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission... PREMISE OF THE STUDYPlann automates the process of annotating a plastome sequence in GenBank format for either downstream processing or for GenBank submission... |
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| SubjectTerms | Annotations Automation Biotechnology chloroplast computer software GenBank Genes genetic databases genome annotation Genomes Internet Mutation National Center for Biotechnology Information Phylogenetics Phylogeography pipelines Plant sciences plastome Sequin SOFTWARE NOTE |
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| Title | Plann: A Command-Line Application for Annotating Plastome Sequences |
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