Phylogeography and Population Structure of the Japanese Wild Boar Sus scrofa leucomystax: Mitochondrial DNA Variation
Phylogeographic characteristics and population structure of Japanese wild boar (Sus scrofa leucomystax) were investigated using mitochondrial DNA (mtDNA) sequence data. Sixteen Japanese wild boar haplotypes detected from partial sequences of the mtDNA control region (574-bp) from 180 Japanese wild b...
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| Published in | Zoological Science Vol. 20; no. 12; pp. 1477 - 1489 |
|---|---|
| Main Authors | , , |
| Format | Journal Article |
| Language | English Japanese |
| Published |
Japan
Zoological Society of Japan
01.12.2003
UniBio Press |
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| Online Access | Get full text |
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| Abstract | Phylogeographic characteristics and population structure of Japanese wild boar (Sus scrofa leucomystax) were investigated using mitochondrial DNA (mtDNA) sequence data. Sixteen Japanese wild boar haplotypes detected from partial sequences of the mtDNA control region (574-bp) from 180 Japanese wild boar specimens from 10 local populations on Honshu, Shikoku, and Kyushu islands and 41 haplotypes from other S. scrofa were analyzed using the neighbor-joining method. The Japanese wild boars were more closely related to Northeast Asian wild boars from Mongolia than to the other Asian continental S. scrofa. The Japanese and Northeast Asian wild boars were not significantly distinguished by corrected average pairwise difference analysis. The ancestors of Japanese wild boars are suggested to have been part of the continental S. scrofa population that spread from Southeast to Northeast Asia during the Middle to Late Pleistocene. The Japanese wild boar mtDNA haplotype cladogram shows 95% parsimoniously plausible branch connections supporting three sympatric clades. Nested clade analysis indicates that these three clades are the result of distinct historical events or gene flow. The present population of Japanese wild boars may have been formed by a few independent migrations of distinct clades from the continent with subsequent mixing on the Japanese Islands. |
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| AbstractList | Phylogeographic characteristics and population structure of Japanese wild boar (Sus scrofa leucomystax) were investigated using mitochondrial DNA (mtDNA) sequence data. Sixteen Japanese wild boar haplotypes detected from partial sequences of the mtDNA control region (574-bp) from 180 Japanese wild boar specimens from 10 local populations on Honshu, Shikoku, and Kyushu islands and 41 haplotypes from other S. scrofa were analyzed using the neighbor-joining method. The Japanese wild boars were more closely related to Northeast Asian wild boars from Mongolia than to the other Asian continental S. scrofa. The Japanese and Northeast Asian wild boars were not significantly distinguished by corrected average pairwise difference analysis. The ancestors of Japanese wild boars are suggested to have been part of the continental S. scrofa population that spread from Southeast to Northeast Asia during the Middle to Late Pleistocene. The Japanese wild boar mtDNA haplotype cladogram shows 95% parsimoniously plausible branch connections supporting three sympatric clades. Nested clade analysis indicates that these three clades are the result of distinct historical events or gene flow. The present population of Japanese wild boars may have been formed by a few independent migrations of distinct clades from the continent with subsequent mixing on the Japanese Islands. |
| Author | Ishiguro, Naotaka Nakano, Masuo Watanobe, Takuma |
| Author_xml | – sequence: 1 givenname: Takuma surname: Watanobe fullname: Watanobe, Takuma organization: Department of Bioresource Science, Obihiro University of Agriculture and Veterinary Medicine, Obihiro, Hokkaido 080-8555, Japan – sequence: 2 givenname: Naotaka surname: Ishiguro fullname: Ishiguro, Naotaka organization: Department of Veterinary Public Health, Obihiro University of Agriculture and Veterinary Medicine, Obihiro, Hokkaido 080-8555, Japan – sequence: 3 givenname: Masuo surname: Nakano fullname: Nakano, Masuo organization: Department of Bioresource Science, Obihiro University of Agriculture and Veterinary Medicine, Obihiro, Hokkaido 080-8555, Japan |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/14709812$$D View this record in MEDLINE/PubMed |
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| SubjectTerms | Analysis of Variance Animals Base Sequence Cluster Analysis DNA Primers DNA, Mitochondrial - genetics genetic population structure Genetic Variation Genetics, Population Geography Haplotypes - genetics Japan Japanese wild boar migration mitochondrial DNA Molecular Sequence Data Original s Phylogeny phylogeography Sequence Analysis, DNA Sus scrofa - genetics |
| Title | Phylogeography and Population Structure of the Japanese Wild Boar Sus scrofa leucomystax: Mitochondrial DNA Variation |
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