Use of Sonic Tomography to Detect and Quantify Wood Decay in Living Trees

Premise of the study: Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention to tropical rainforest trees with irregular trunk shapes. Methods and Resu...

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Published inApplications in plant sciences Vol. 4; no. 12
Main Authors Gilbert, Gregory S, Ballesteros, Javier O, Barrios-Rodriguez, Cesar A, Bonadies, Ernesto F, Cedeño-Sánchez, Marjorie L, Fossatti-Caballero, Nohely J, Trejos-Rodríguez, Mariam M, Pérez-Suñiga, José Moises, Holub-Young, Katharine S, Henn, Laura A. W, Thompson, Jennifer B, García-López, Cesar G, Romo, Amanda C, Johnston, Daniel C, Barrick, Pablo P, Jordan, Fulvia A, Hershcovich, Shiran, Russo, Natalie, Sánchez, Juan David, Fábrega, Juan Pablo, Lumpkin, Raleigh, McWilliams, Hunter A, Chester, Kathleen N, Burgos, Alana C, Wong, E. Beatriz, Diab, Jonathan H, Renteria, Sonia A, Harrower, Jennifer T, Hooton, Douglas A, Glenn, Travis C, Faircloth, Brant C, Hubbell, Stephen P
Format Journal Article
LanguageEnglish
Published United States Botanical Society of America 01.12.2016
John Wiley & Sons, Inc
Subjects
acoustic tomography
Argus PiCUS 3 Sonic Tomograph
Bark
Forests
Image processing
ImageJ
Plant sciences
PROTOCOL NOTE
Rainforests
Sensors
Software
Tomography
Trees
tropical trees
Vouchers
United States > US
Barro Colorado Island
ImageJ
tropical trees
Argus PiCUS 3 Sonic Tomograph
acoustic tomography
Online AccessGet full text

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Abstract Premise of the study: Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention to tropical rainforest trees with irregular trunk shapes. Methods and Results: Living trunks of a diversity of tree species in tropical rainforests in the Republic of Panama were scanned using an Argus Electronic PiCUS 3 Sonic Tomograph and evaluated for the amount and patterns of internal decay. A protocol using ImageJ analysis software was used to quantify the proportions of intact and compromised wood. The protocols provide replicable estimates of internal decay and cavities for trees of varying shapes, wood density, and bark thickness. Conclusions: Sonic tomography, coupled with image analysis, provides an efficient, noninvasive approach to evaluate decay patterns and structural integrity of even irregularly shaped living trees.
AbstractList Premise of the study: Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention to tropical rainforest trees with irregular trunk shapes. Methods and Results: Living trunks of a diversity of tree species in tropical rainforests in the Republic of Panama were scanned using an Argus Electronic PiCUS 3 Sonic Tomograph and evaluated for the amount and patterns of internal decay. A protocol using ImageJ analysis software was used to quantify the proportions of intact and compromised wood. The protocols provide replicable estimates of internal decay and cavities for trees of varying shapes, wood density, and bark thickness. Conclusions: Sonic tomography, coupled with image analysis, provides an efficient, noninvasive approach to evaluate decay patterns and structural integrity of even irregularly shaped living trees.
Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention to tropical rainforest trees with irregular trunk shapes. Living trunks of a diversity of tree species in tropical rainforests in the Republic of Panama were scanned using an Argus Electronic PiCUS 3 Sonic Tomograph and evaluated for the amount and patterns of internal decay. A protocol using ImageJ analysis software was used to quantify the proportions of intact and compromised wood. The protocols provide replicable estimates of internal decay and cavities for trees of varying shapes, wood density, and bark thickness. Sonic tomography, coupled with image analysis, provides an efficient, noninvasive approach to evaluate decay patterns and structural integrity of even irregularly shaped living trees.
Premise of the study:Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention to tropical rainforest trees with irregular trunk shapes.Methods and Results:Living trunks of a diversity of tree species in tropical rainforests in the Republic of Panama were scanned using an Argus Electronic PiCUS 3 Sonic Tomograph and evaluated for the amount and patterns of internal decay. A protocol using ImageJ analysis software was used to quantify the proportions of intact and compromised wood. The protocols provide replicable estimates of internal decay and cavities for trees of varying shapes, wood density, and bark thickness.Conclusions:Sonic tomography, coupled with image analysis, provides an efficient, noninvasive approach to evaluate decay patterns and structural integrity of even irregularly shaped living trees.
PREMISE OF THE STUDYField methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and damage of living trees, with special attention to tropical rainforest trees with irregular trunk shapes. METHODS AND RESULTSLiving trunks of a diversity of tree species in tropical rainforests in the Republic of Panama were scanned using an Argus Electronic PiCUS 3 Sonic Tomograph and evaluated for the amount and patterns of internal decay. A protocol using ImageJ analysis software was used to quantify the proportions of intact and compromised wood. The protocols provide replicable estimates of internal decay and cavities for trees of varying shapes, wood density, and bark thickness. CONCLUSIONSSonic tomography, coupled with image analysis, provides an efficient, noninvasive approach to evaluate decay patterns and structural integrity of even irregularly shaped living trees.
Author Hubbell, Stephen P
Henn, Laura A. W
Hershcovich, Shiran
Romo, Amanda C
Lumpkin, Raleigh
Bonadies, Ernesto F
Barrick, Pablo P
Wong, E. Beatriz
Sánchez, Juan David
Thompson, Jennifer B
Johnston, Daniel C
García-López, Cesar G
Hooton, Douglas A
Burgos, Alana C
Diab, Jonathan H
Glenn, Travis C
Fábrega, Juan Pablo
Pérez-Suñiga, José Moises
Fossatti-Caballero, Nohely J
Trejos-Rodríguez, Mariam M
Jordan, Fulvia A
Holub-Young, Katharine S
Ballesteros, Javier O
Chester, Kathleen N
Barrios-Rodriguez, Cesar A
Cedeño-Sánchez, Marjorie L
McWilliams, Hunter A
Gilbert, Gregory S
Faircloth, Brant C
Russo, Natalie
Renteria, Sonia A
Harrower, Jennifer T
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Keywords ImageJ
tropical trees
Argus PiCUS 3 Sonic Tomograph
acoustic tomography
Language English
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Notes This research was made possible by grants from the National Science Foundation (DEB‐1136626 and DEB‐143741), logistical support from the Smithsonian Tropical Research Institute, and permissions (SE/P‐24‐13, SE/APH‐3‐14, SE/P‐17‐14, SE/P‐7‐15) to conduct research in Panamanian forests from the Autoridad Nacional del Ambiente (ANAM), Republic of Panama.
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Snippet Premise of the study: Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of...
Premise of the study: Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of...
Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of internal decay and...
Premise of the study:Field methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of...
PREMISE OF THE STUDYField methodology and image analysis protocols using acoustic tomography were developed and evaluated as a tool to estimate the amount of...
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crossref
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bioone
SourceType Aggregation Database
Index Database
Publisher
SubjectTerms acoustic tomography
Argus PiCUS 3 Sonic Tomograph
Bark
Forests
Image processing
ImageJ
Plant sciences
PROTOCOL NOTE
Rainforests
Sensors
Software
Tomography
Trees
tropical trees
Vouchers
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Title Use of Sonic Tomography to Detect and Quantify Wood Decay in Living Trees
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https://onlinelibrary.wiley.com/doi/abs/10.3732%2Fapps.1600060
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