Early–branching or fast–evolving eukaryotes? An answer based on slowly evolving positions
The current paradigm of eukaryotic evolution is based primarily on comparative analysis of ribosomal RNA sequences. It shows several early-emerging lineages, mostly amitochondriate, which might be living relics of a progressive assembly of the eukaryotic cell. However, the analysis of slow-evolving...
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| Published in | Philosophical transactions of the Royal Society of London. Series B. Biological sciences Vol. 267; no. 1449; pp. 1213 - 1221 |
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| Main Authors | , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
The Royal Society
22.06.2000
Royal Society, The |
| Subjects | |
| Online Access | Get full text |
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| Abstract | The current paradigm of eukaryotic evolution is based primarily on comparative analysis of ribosomal RNA sequences. It shows several early-emerging lineages, mostly amitochondriate, which might be living relics of a progressive assembly of the eukaryotic cell. However, the analysis of slow-evolving positions, carried out with the newly developed slow-fast method, reveals that these lineages are, in terms of nucleotide substitution, fast-evolving ones, misplaced at the base of the tree by a long branch attraction artefact. Since the fast-evolving groups are not always the same, depending on which macromolecule is used as a marker, this explains most of the observed incongruent phylogenies. The current paradigm of eukaryotic evolution thus has to be seriously re-examined as the eukaryotic phylogeny is presently best summarized by a multifurcation. This is consistent with the Big Bang hypothesis that all extant eukaryotic lineages are the result of multiple cladogeneses within a relatively brief period, although insufficiency of data is also a possible explanation for the lack of resolution. For further resolution, rare evolutionary events such as shared insertions and/or deletions or gene fusions might be helpful. |
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| AbstractList | The current paradigm of eukaryotic evolution is based primarily on comparative analysis of ribosomal RNA sequences. It shows several early-emerging lineages, mostly amitochondriate, which might be living relics of a progressive assembly of the eukaryotic cell. However, the analysis of slow-evolving positions, carried out with the newly developed slow-fast method, reveals that these lineages are, in terms of nucleotide substitution, fast-evolving ones, misplaced at the base of the tree by a long branch attraction artefact. Since the fast-evolving groups are not always the same, depending on which macromolecule is used as a marker, this explains most of the observed incongruent phylogenies. The current paradigm of eukaryotic evolution thus has to be seriously re-examined as the eukaryotic phylogeny is presently best summarized by a multifurcation. This is consistent with the Big Bang hypothesis that all extant eukaryotic lineages are the result of multiple cladogeneses within a relatively brief period, although insufficiency of data is also a possible explanation for the lack of resolution. For further resolution, rare evolutionary events such as shared insertions and/or deletions or gene fusions might be helpful. The current paradigm of eukaryotic evolution is based primarily on comparative analysis of ribosomal RNA sequences. It shows several early-emerging lineages, mostly amitochondriate, which might be living relies of a progressive assembly of the eukaryotic cell. However, the analysis of slow-evolving positions, carried out with the newly developed slow-fast method, reveals that these lineages are, in terms of nucleotide substitution, fast-evolving ones, misplaced at the base of the tree by a long branch attraction artefact. Since the fast-evolving groups are not always the same, depending on which macromolecule is used as a marker, this explains most of the observed incongruent phylogenies. The current paradigm of eukaryotic evolution thus has to be seriously re-examined as the eukaryotic phylogeny is presently best summarized by a multifurcation. This is consistent with the Big Bang hypothesis that all extant eukaryotic lineages are the result of multiple cladogeneses within a relatively brief period, although insufficiency of data is also a possible explanation for the lack of resolution. For further resolution, rare evolutionary events such as shared insertions and/or deletions or gene fusions might be helpful. The current paradigm of eukaryotic evolution is based primarily on comparative analysis of ribosomal RNA sequences. It shows several early–emerging lineages, mostly amitochondriate, which might be living relics of a progressive assembly of the eukaryotic cell. However, the analysis of slow–evolving positions, carried out with the newly developed slow–fast method, reveals that these lineages are, in terms of nucleotide substitution, fast–evolving ones, misplaced at the base of the tree by a long branch attraction artefact. Since the fast–evolving groups are not always the same, depending on which macromolecule is used as a marker, this explains most of the observed incongruent phylogenies. The current paradigm of eukaryotic evolution thus has to be seriously re–examined as the eukaryotic phylogeny is presently best summarized by a multifurcation. This is consistent with the Big Bang hypothesis that all extant eukaryotic lineages are the result of multiple cladogeneses within a relatively brief period, although insufficiency of data is also a possible explanation for the lack of resolution. For further resolution, rare evolutionary events such as shared insertions and/or deletions or gene fusions might be helpful. |
| Author | Germot, Agnés Laurent, Jacqueline Moreira, David Brinkmann, Henner Budin, Karine Müller, Miklós Philippe, Hervé Lopez, Philippe Guyader, Hervé Le |
| AuthorAffiliation | Phylogénie et Evolution Moléculaires (UPRES-A 8080), Université Paris-Sud, Orsay, France. herve.philippe@bc4.u-psud.fr |
| AuthorAffiliation_xml | – name: Phylogénie et Evolution Moléculaires (UPRES-A 8080), Université Paris-Sud, Orsay, France. herve.philippe@bc4.u-psud.fr |
| Author_xml | – sequence: 1 givenname: Hervé surname: Philippe fullname: Philippe, Hervé email: herve.philippe@bc4.u-psud.fr organization: Phylogénie et Evolution Moléculaires (UPRES-A, Bât. 444, Université Paris-Sud 8080, 91405 Orsay, France – sequence: 2 givenname: Philippe surname: Lopez fullname: Lopez, Philippe organization: Phylogénie et Evolution Moléculaires (UPRES-A, Bât. 444, Université Paris-Sud 8080, 91405 Orsay, France – sequence: 3 givenname: Henner surname: Brinkmann fullname: Brinkmann, Henner organization: Phylogénie et Evolution Moléculaires (UPRES-A, Bât. 444, Université Paris-Sud 8080, 91405 Orsay, France – sequence: 4 givenname: Karine surname: Budin fullname: Budin, Karine organization: Phylogénie et Evolution Moléculaires (UPRES-A, Bât. 444, Université Paris-Sud 8080, 91405 Orsay, France – sequence: 5 givenname: Agnés surname: Germot fullname: Germot, Agnés organization: Phylogénie et Evolution Moléculaires (UPRES-A, Bât. 444, Université Paris-Sud 8080, 91405 Orsay, France – sequence: 6 givenname: Jacqueline surname: Laurent fullname: Laurent, Jacqueline organization: Phylogénie et Evolution Moléculaires (UPRES-A, Bât. 444, Université Paris-Sud 8080, 91405 Orsay, France – sequence: 7 givenname: David surname: Moreira fullname: Moreira, David organization: Phylogénie et Evolution Moléculaires (UPRES-A, Bât. 444, Université Paris-Sud 8080, 91405 Orsay, France – sequence: 8 givenname: Miklós surname: Müller fullname: Müller, Miklós organization: The Rockefeller University, New York, NY 10021, USA – sequence: 9 givenname: Hervé Le surname: Guyader fullname: Guyader, Hervé Le organization: Phylogénie et Evolution Moléculaires (UPRES-A, Bât. 444, Université Paris-Sud 8080, 91405 Orsay, France |
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| Snippet | The current paradigm of eukaryotic evolution is based primarily on comparative analysis of ribosomal RNA sequences. It shows
several early–emerging lineages,... The current paradigm of eukaryotic evolution is based primarily on comparative analysis of ribosomal RNA sequences. It shows several early-emerging lineages,... |
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| SubjectTerms | Actins Actins - genetics Brackish Datasets Early-Branching Organisms Eukaryotes Eukaryotic cells Eukaryotic Cells - classification Evolution Evolution, Molecular Freshwater Fungi Life Sciences Long Branch Attraction Artefact Loss Of Function Marine Microsporidia Molecular Phylogeny Peptide Elongation Factor 1 Phylogenetics Phylogeny RNA Polymerase II - genetics RNA, Ribosomal - analysis rRNA Sequence Analysis, RNA Taxa Tubulin - genetics We they distinction |
| Title | Early–branching or fast–evolving eukaryotes? An answer based on slowly evolving positions |
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