Molecular Analysis of Human Metapneumovirus Detected in Patients with Lower Respiratory Tract Infection in Upper Egypt

Introduction. Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although reports have confirmed the prevalence of HMPV worldwide, data from Egypt remain limited. HMPV plays an important role in respiratory tract infectio...

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Published inInternational Journal of Microbiology Vol. 2014; no. 2014; pp. 92 - 102
Main Authors Osmann, Ahmed H., Brune, Wolfram, Badary, Mohamed S., Schweiger, Brunhilde, Thabit, Amany G., Jacobsen, Sonja, Embarek Mohamed, Mona S., Reiche, Janine
Format Journal Article
LanguageEnglish
Published Cairo, Egypt Hindawi Limiteds 2014
Hindawi Puplishing Corporation
Hindawi Publishing Corporation
John Wiley & Sons, Inc
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Abstract Introduction. Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although reports have confirmed the prevalence of HMPV worldwide, data from Egypt remain limited. HMPV plays an important role in respiratory tract infections in individuals of all ages particularly in children. This study was aimed at estimating the prevalence of HMPV in patients with community-acquired lower respiratory infection in Upper Egypt and characterizing the circulating Egyptian HMPV strains for the first time. Materials and Methods. From 2005 to 2008, respiratory samples from 520 patients were analyzed for the presence of HMPV by real-time RT-PCR. Molecular and phylogenetic analyses were performed on partial fusion gene sequences of HMPV-positive patients. Results. HMPV-positive patients were detected in 2007-2008. The overall infection rate was 4%, while 57% of the patients were children. Sequence analysis demonstrated circulation of subgroup B viruses with predominance of lineage B2. Nucleotide sequence identity within lineage B1 was 98.8%–99.7% and higher than that in lineage B2 (94.3%–100%). Three new amino acid substitutions (T223N, R229K, and D280N) of lineage B2 were observed. Conclusion. HMPV is a major viral pathogen in the Egyptian population especially in children. During 2007-2008, predominantly HMPV B2 circulated in Upper Egypt.
AbstractList Introduction . Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although reports have confirmed the prevalence of HMPV worldwide, data from Egypt remain limited. HMPV plays an important role in respiratory tract infections in individuals of all ages particularly in children. This study was aimed at estimating the prevalence of HMPV in patients with community-acquired lower respiratory infection in Upper Egypt and characterizing the circulating Egyptian HMPV strains for the first time. Materials and Methods . From 2005 to 2008, respiratory samples from 520 patients were analyzed for the presence of HMPV by real-time RT-PCR. Molecular and phylogenetic analyses were performed on partial fusion gene sequences of HMPV-positive patients. Results . HMPV-positive patients were detected in 2007-2008. The overall infection rate was 4%, while 57% of the patients were children. Sequence analysis demonstrated circulation of subgroup B viruses with predominance of lineage B2. Nucleotide sequence identity within lineage B1 was 98.8%–99.7% and higher than that in lineage B2 (94.3%–100%). Three new amino acid substitutions (T223N, R229K, and D280N) of lineage B2 were observed. Conclusion . HMPV is a major viral pathogen in the Egyptian population especially in children. During 2007-2008, predominantly HMPV B2 circulated in Upper Egypt.
Introduction. Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although reports have confirmed the prevalence of HMPV worldwide, data from Egypt remain limited. HMPV plays an important role in respiratory tract infections in individuals of all ages particularly in children. This study was aimed at estimating the prevalence of HMPV in patients with community-acquired lower respiratory infection in Upper Egypt and characterizing the circulating Egyptian HMPV strains for the first time. Materials and Methods. From 2005 to 2008, respiratory samples from 520 patients were analyzed for the presence of HMPV by real-time RT-PCR. Molecular and phylogenetic analyses were performed on partial fusion gene sequences of HMPV-positive patients. Results. HMPV-positive patients were detected in 2007-2008. The overall infection rate was 4%, while 57% of the patients were children. Sequence analysis demonstrated circulation of subgroup B viruses with predominance of lineage B2. Nucleotide sequence identity within lineage B1 was 98.8%-99.7% and higher than that in lineage B2 (94.3%-100%). Three new amino acid substitutions (T223N, R229K, and D280N) of lineage B2 were observed. Conclusion. HMPV is a major viral pathogen in the Egyptian population especially in children. During 2007-2008, predominantly HMPV B2 circulated in Upper Egypt.
Audience Academic
Author Brune, Wolfram
Schweiger, Brunhilde
Thabit, Amany G.
Reiche, Janine
Osmann, Ahmed H.
Embarek Mohamed, Mona S.
Badary, Mohamed S.
Jacobsen, Sonja
AuthorAffiliation 1 Department of Microbiology and Immunology, Faculty of Medicine, Assiut University, Assiut 71516, Egypt
3 Heinrich Pette Institute, Leibniz Institute for Experimental Virology, 20251 Hamburg, Germany
2 National Influenza Center, Robert Koch Institute, 13353 Berlin, Germany
4 Department of Chest Diseases, Faculty of Medicine, Assiut University, Assiut 71516, Egypt
AuthorAffiliation_xml – name: 1 Department of Microbiology and Immunology, Faculty of Medicine, Assiut University, Assiut 71516, Egypt
– name: 2 National Influenza Center, Robert Koch Institute, 13353 Berlin, Germany
– name: 3 Heinrich Pette Institute, Leibniz Institute for Experimental Virology, 20251 Hamburg, Germany
– name: 4 Department of Chest Diseases, Faculty of Medicine, Assiut University, Assiut 71516, Egypt
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ContentType Journal Article
Contributor Brune, Wolfram
Schweiger, Brunhilde
Osmann, Ahmed H
Reiche, Janine
Badary, Mohamed S
Jacobsen, Sonja
Embarek Mohamed, Mona S
Thabit, Amany G
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  fullname: Embarek Mohamed, Mona S
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  fullname: Reiche, Janine
Copyright Copyright © 2014 Mona S. Embarek Mohamed et al.
COPYRIGHT 2014 John Wiley & Sons, Inc.
Copyright © 2014 Mona S. Embarek Mohamed et al. Mona S. Embarek Mohamed et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Copyright © 2014 Mona S. Embarek Mohamed et al. 2014
Copyright_xml – notice: Copyright © 2014 Mona S. Embarek Mohamed et al.
– notice: COPYRIGHT 2014 John Wiley & Sons, Inc.
– notice: Copyright © 2014 Mona S. Embarek Mohamed et al. Mona S. Embarek Mohamed et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
– notice: Copyright © 2014 Mona S. Embarek Mohamed et al. 2014
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SSID ssj0068259
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Snippet Introduction. Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although...
Introduction . Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although...
Introduction . Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although...
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StartPage 92
SubjectTerms Amino acids
Epidemiology
Health aspects
Hospitals
Host-virus relationships
Human metapneumovirus
Identification and classification
Infections
Microbiology
Multiculturalism & pluralism
Phylogenetics
Physiological aspects
Proteins
Respiratory tract
Respiratory tract infections
RNA polymerase
RNA viruses
Seasons
Viral infections
Viruses
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Title Molecular Analysis of Human Metapneumovirus Detected in Patients with Lower Respiratory Tract Infection in Upper Egypt
URI https://www.airitilibrary.com/Article/Detail/P20160524001-201412-201605240011-201605240011-92-102
https://search.emarefa.net/detail/BIM-460798
https://dx.doi.org/10.1155/2014/290793
https://www.ncbi.nlm.nih.gov/pubmed/24669221
https://www.proquest.com/docview/1563779186
https://search.proquest.com/docview/1510711560
https://search.proquest.com/docview/1534822705
https://pubmed.ncbi.nlm.nih.gov/PMC3941176
https://doaj.org/article/938c8fb3b40541f09d92b9f763ea4abf
Volume 2014
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