Molecular Analysis of Human Metapneumovirus Detected in Patients with Lower Respiratory Tract Infection in Upper Egypt
Introduction. Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although reports have confirmed the prevalence of HMPV worldwide, data from Egypt remain limited. HMPV plays an important role in respiratory tract infectio...
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Published in | International Journal of Microbiology Vol. 2014; no. 2014; pp. 92 - 102 |
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Main Authors | , , , , , , , |
Format | Journal Article |
Language | English |
Published |
Cairo, Egypt
Hindawi Limiteds
2014
Hindawi Puplishing Corporation Hindawi Publishing Corporation John Wiley & Sons, Inc Hindawi Limited |
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Abstract | Introduction. Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although reports have confirmed the prevalence of HMPV worldwide, data from Egypt remain limited. HMPV plays an important role in respiratory tract infections in individuals of all ages particularly in children. This study was aimed at estimating the prevalence of HMPV in patients with community-acquired lower respiratory infection in Upper Egypt and characterizing the circulating Egyptian HMPV strains for the first time. Materials and Methods. From 2005 to 2008, respiratory samples from 520 patients were analyzed for the presence of HMPV by real-time RT-PCR. Molecular and phylogenetic analyses were performed on partial fusion gene sequences of HMPV-positive patients. Results. HMPV-positive patients were detected in 2007-2008. The overall infection rate was 4%, while 57% of the patients were children. Sequence analysis demonstrated circulation of subgroup B viruses with predominance of lineage B2. Nucleotide sequence identity within lineage B1 was 98.8%–99.7% and higher than that in lineage B2 (94.3%–100%). Three new amino acid substitutions (T223N, R229K, and D280N) of lineage B2 were observed. Conclusion. HMPV is a major viral pathogen in the Egyptian population especially in children. During 2007-2008, predominantly HMPV B2 circulated in Upper Egypt. |
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AbstractList | Introduction
. Since 2001, when
Human metapneumovirus
(HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although reports have confirmed the prevalence of HMPV worldwide, data from Egypt remain limited. HMPV plays an important role in respiratory tract infections in individuals of all ages particularly in children. This study was aimed at estimating the prevalence of HMPV in patients with community-acquired lower respiratory infection in Upper Egypt and characterizing the circulating Egyptian HMPV strains for the first time.
Materials and Methods
. From 2005 to 2008, respiratory samples from 520 patients were analyzed for the presence of HMPV by real-time RT-PCR. Molecular and phylogenetic analyses were performed on partial fusion gene sequences of HMPV-positive patients.
Results
. HMPV-positive patients were detected in 2007-2008. The overall infection rate was 4%, while 57% of the patients were children. Sequence analysis demonstrated circulation of subgroup B viruses with predominance of lineage B2. Nucleotide sequence identity within lineage B1 was 98.8%–99.7% and higher than that in lineage B2 (94.3%–100%). Three new amino acid substitutions (T223N, R229K, and D280N) of lineage B2 were observed.
Conclusion
. HMPV is a major viral pathogen in the Egyptian population especially in children. During 2007-2008, predominantly HMPV B2 circulated in Upper Egypt. Introduction. Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although reports have confirmed the prevalence of HMPV worldwide, data from Egypt remain limited. HMPV plays an important role in respiratory tract infections in individuals of all ages particularly in children. This study was aimed at estimating the prevalence of HMPV in patients with community-acquired lower respiratory infection in Upper Egypt and characterizing the circulating Egyptian HMPV strains for the first time. Materials and Methods. From 2005 to 2008, respiratory samples from 520 patients were analyzed for the presence of HMPV by real-time RT-PCR. Molecular and phylogenetic analyses were performed on partial fusion gene sequences of HMPV-positive patients. Results. HMPV-positive patients were detected in 2007-2008. The overall infection rate was 4%, while 57% of the patients were children. Sequence analysis demonstrated circulation of subgroup B viruses with predominance of lineage B2. Nucleotide sequence identity within lineage B1 was 98.8%-99.7% and higher than that in lineage B2 (94.3%-100%). Three new amino acid substitutions (T223N, R229K, and D280N) of lineage B2 were observed. Conclusion. HMPV is a major viral pathogen in the Egyptian population especially in children. During 2007-2008, predominantly HMPV B2 circulated in Upper Egypt. |
Audience | Academic |
Author | Brune, Wolfram Schweiger, Brunhilde Thabit, Amany G. Reiche, Janine Osmann, Ahmed H. Embarek Mohamed, Mona S. Badary, Mohamed S. Jacobsen, Sonja |
AuthorAffiliation | 1 Department of Microbiology and Immunology, Faculty of Medicine, Assiut University, Assiut 71516, Egypt 3 Heinrich Pette Institute, Leibniz Institute for Experimental Virology, 20251 Hamburg, Germany 2 National Influenza Center, Robert Koch Institute, 13353 Berlin, Germany 4 Department of Chest Diseases, Faculty of Medicine, Assiut University, Assiut 71516, Egypt |
AuthorAffiliation_xml | – name: 1 Department of Microbiology and Immunology, Faculty of Medicine, Assiut University, Assiut 71516, Egypt – name: 2 National Influenza Center, Robert Koch Institute, 13353 Berlin, Germany – name: 3 Heinrich Pette Institute, Leibniz Institute for Experimental Virology, 20251 Hamburg, Germany – name: 4 Department of Chest Diseases, Faculty of Medicine, Assiut University, Assiut 71516, Egypt |
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BackLink | https://www.ncbi.nlm.nih.gov/pubmed/24669221$$D View this record in MEDLINE/PubMed |
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Contributor | Brune, Wolfram Schweiger, Brunhilde Osmann, Ahmed H Reiche, Janine Badary, Mohamed S Jacobsen, Sonja Embarek Mohamed, Mona S Thabit, Amany G |
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Copyright | Copyright © 2014 Mona S. Embarek Mohamed et al. COPYRIGHT 2014 John Wiley & Sons, Inc. Copyright © 2014 Mona S. Embarek Mohamed et al. Mona S. Embarek Mohamed et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Copyright © 2014 Mona S. Embarek Mohamed et al. 2014 |
Copyright_xml | – notice: Copyright © 2014 Mona S. Embarek Mohamed et al. – notice: COPYRIGHT 2014 John Wiley & Sons, Inc. – notice: Copyright © 2014 Mona S. Embarek Mohamed et al. Mona S. Embarek Mohamed et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. – notice: Copyright © 2014 Mona S. Embarek Mohamed et al. 2014 |
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Snippet | Introduction. Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although... Introduction . Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although... Introduction . Since 2001, when Human metapneumovirus (HMPV) was isolated in the Netherlands, the virus has been detected in several continents. Although... |
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SubjectTerms | Amino acids Epidemiology Health aspects Hospitals Host-virus relationships Human metapneumovirus Identification and classification Infections Microbiology Multiculturalism & pluralism Phylogenetics Physiological aspects Proteins Respiratory tract Respiratory tract infections RNA polymerase RNA viruses Seasons Viral infections Viruses |
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Title | Molecular Analysis of Human Metapneumovirus Detected in Patients with Lower Respiratory Tract Infection in Upper Egypt |
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