Streptococcus oriscaviae sp. nov. Infection Associated with Guinea Pigs

Pet bite-related infections are commonly caused by the pet's oral flora transmitted to the animal handlers through the bite wounds. In this study, we isolated a , HKU75 , in pure culture from the purulent discharge collected from a guinea pig bite wound in a previously healthy young patient. HK...

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Published inMicrobiology spectrum Vol. 10; no. 3; p. e0001422
Main Authors Teng, Jade L L, Ma, Yuanchao, Chen, Jonathan H K, Luo, Ruibang, Foo, Chuen-Hing, Li, Tsz Tuen, Fong, Jordan Y H, Yao, Weiming, Wong, Samson S Y, Fung, Kitty S C, Lau, Susanna K P, Woo, Patrick C Y
Format Journal Article
LanguageEnglish
Published United States American Society for Microbiology 01.06.2022
Subjects
bite wound
Clinical Microbiology
guinea pigs
infection
novel species
Research Article
Streptococcus oriscaviae
infection
bite wound
guinea pigs
novel species
Streptococcus oriscaviae
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Abstract Pet bite-related infections are commonly caused by the pet's oral flora transmitted to the animal handlers through the bite wounds. In this study, we isolated a , HKU75 , in pure culture from the purulent discharge collected from a guinea pig bite wound in a previously healthy young patient. HKU75 was alpha-hemolytic on sheep blood agar and agglutinated with Lancefield group D and group G antisera. API 20 STREP showed that the most likely identity for HKU75 was I with 85.4% confidence while Vitek 2 showed that HKU75 was unidentifiable. MALDI-TOF MS identified HKU75 as (score of 1.86 only). 16S rRNA gene sequencing showed that HKU75 was most closely related to (98.3% nucleotide identity), whereas partial and gene sequencing showed that it was most closely related to (81.8% and 89.8% nucleotide identity respectively). Whole genome sequencing and intergenomic distance determined by ANI revealed that there was <85% identity between the genome of HKU75 and those of all other known species. Genome classification using concatenated sequences of 92 bacterial core genes showed that HKU75 belonged to the Suis group. gene sequences identical to that of HKU75 could be directly amplified from the oral cavities of the two guinea pigs owned by the patient. HKU75 is a novel species, which we propose to be named . The oral cavity of guinea pigs is presumably a reservoir of . Some of the reported strains isolated from clinical specimens may be . We reported the discovery of a novel species, propose to be named , from the pus collected from a guinea pig bite wound in a healthy young patient. The bacterium was initially misidentified as / by biochemical tests, mass spectrometry. and housekeeping genes sequencing. Its novelty was confirmed by whole genome sequencing. Comparative genomic studies showed that belongs to the Suis group. sequences were detected in the oral cavities of the two guinea pigs owned by the patient, suggesting that the oral cavity of guinea pigs could be a reservoir of . Some of the reported strains may be . Further studies are warranted to refine our knowledge on this novel species.
AbstractList Pet bite-related infections are commonly caused by the pet’s oral flora transmitted to the animal handlers through the bite wounds. In this study, we isolated a streptococcus , HKU75 T , in pure culture from the purulent discharge collected from a guinea pig bite wound in a previously healthy young patient. HKU75 T was alpha-hemolytic on sheep blood agar and agglutinated with Lancefield group D and group G antisera. API 20 STREP showed that the most likely identity for HKU75 T was S. suis I with 85.4% confidence while Vitek 2 showed that HKU75 T was unidentifiable. MALDI-TOF MS identified HKU75 T as Streptococcus suis (score of 1.86 only). 16S rRNA gene sequencing showed that HKU75 T was most closely related to S. parasuis (98.3% nucleotide identity), whereas partial groEL and rpoB gene sequencing showed that it was most closely related to S. suis (81.8% and 89.8% nucleotide identity respectively). Whole genome sequencing and intergenomic distance determined by ANI revealed that there was <85% identity between the genome of HKU75 T and those of all other known Streptococcus species. Genome classification using concatenated sequences of 92 bacterial core genes showed that HKU75 T belonged to the Suis group. groEL gene sequences identical to that of HKU75 T could be directly amplified from the oral cavities of the two guinea pigs owned by the patient. HKU75 T is a novel Streptococcus species, which we propose to be named S. oriscaviae . The oral cavity of guinea pigs is presumably a reservoir of S. oriscaviae . Some of the reported S. suis strains isolated from clinical specimens may be S. oriscaviae . IMPORTANCE We reported the discovery of a novel Streptococcus species, propose to be named Streptococcus oriscaviae , from the pus collected from a guinea pig bite wound in a healthy young patient. The bacterium was initially misidentified as S. suis / S. parasuis by biochemical tests, mass spectrometry. and housekeeping genes sequencing. Its novelty was confirmed by whole genome sequencing. Comparative genomic studies showed that S. oriscaviae belongs to the Suis group. S. oriscaviae sequences were detected in the oral cavities of the two guinea pigs owned by the patient, suggesting that the oral cavity of guinea pigs could be a reservoir of S. oriscaviae . Some of the reported S. suis strains may be S. oriscaviae . Further studies are warranted to refine our knowledge on this novel Streptococcus species.
Pet bite-related infections are commonly caused by the pet’s oral flora transmitted to the animal handlers through the bite wounds. In this study, we isolated a streptococcus, HKU75T, in pure culture from the purulent discharge collected from a guinea pig bite wound in a previously healthy young patient. HKU75T was alpha-hemolytic on sheep blood agar and agglutinated with Lancefield group D and group G antisera. API 20 STREP showed that the most likely identity for HKU75T was S. suis I with 85.4% confidence while Vitek 2 showed that HKU75T was unidentifiable. MALDI-TOF MS identified HKU75T as Streptococcus suis (score of 1.86 only). 16S rRNA gene sequencing showed that HKU75T was most closely related to S. parasuis (98.3% nucleotide identity), whereas partial groEL and rpoB gene sequencing showed that it was most closely related to S. suis (81.8% and 89.8% nucleotide identity respectively). Whole genome sequencing and intergenomic distance determined by ANI revealed that there was <85% identity between the genome of HKU75T and those of all other known Streptococcus species. Genome classification using concatenated sequences of 92 bacterial core genes showed that HKU75T belonged to the Suis group. groEL gene sequences identical to that of HKU75T could be directly amplified from the oral cavities of the two guinea pigs owned by the patient. HKU75T is a novel Streptococcus species, which we propose to be named S. oriscaviae. The oral cavity of guinea pigs is presumably a reservoir of S. oriscaviae. Some of the reported S. suis strains isolated from clinical specimens may be S. oriscaviae. IMPORTANCE We reported the discovery of a novel Streptococcus species, propose to be named Streptococcus oriscaviae, from the pus collected from a guinea pig bite wound in a healthy young patient. The bacterium was initially misidentified as S. suis/S. parasuis by biochemical tests, mass spectrometry. and housekeeping genes sequencing. Its novelty was confirmed by whole genome sequencing. Comparative genomic studies showed that S. oriscaviae belongs to the Suis group. S. oriscaviae sequences were detected in the oral cavities of the two guinea pigs owned by the patient, suggesting that the oral cavity of guinea pigs could be a reservoir of S. oriscaviae. Some of the reported S. suis strains may be S. oriscaviae. Further studies are warranted to refine our knowledge on this novel Streptococcus species.
Pet bite-related infections are commonly caused by the pet's oral flora transmitted to the animal handlers through the bite wounds. In this study, we isolated a , HKU75 , in pure culture from the purulent discharge collected from a guinea pig bite wound in a previously healthy young patient. HKU75 was alpha-hemolytic on sheep blood agar and agglutinated with Lancefield group D and group G antisera. API 20 STREP showed that the most likely identity for HKU75 was I with 85.4% confidence while Vitek 2 showed that HKU75 was unidentifiable. MALDI-TOF MS identified HKU75 as (score of 1.86 only). 16S rRNA gene sequencing showed that HKU75 was most closely related to (98.3% nucleotide identity), whereas partial and gene sequencing showed that it was most closely related to (81.8% and 89.8% nucleotide identity respectively). Whole genome sequencing and intergenomic distance determined by ANI revealed that there was <85% identity between the genome of HKU75 and those of all other known species. Genome classification using concatenated sequences of 92 bacterial core genes showed that HKU75 belonged to the Suis group. gene sequences identical to that of HKU75 could be directly amplified from the oral cavities of the two guinea pigs owned by the patient. HKU75 is a novel species, which we propose to be named . The oral cavity of guinea pigs is presumably a reservoir of . Some of the reported strains isolated from clinical specimens may be . We reported the discovery of a novel species, propose to be named , from the pus collected from a guinea pig bite wound in a healthy young patient. The bacterium was initially misidentified as / by biochemical tests, mass spectrometry. and housekeeping genes sequencing. Its novelty was confirmed by whole genome sequencing. Comparative genomic studies showed that belongs to the Suis group. sequences were detected in the oral cavities of the two guinea pigs owned by the patient, suggesting that the oral cavity of guinea pigs could be a reservoir of . Some of the reported strains may be . Further studies are warranted to refine our knowledge on this novel species.
ABSTRACT Pet bite-related infections are commonly caused by the pet’s oral flora transmitted to the animal handlers through the bite wounds. In this study, we isolated a streptococcus, HKU75T, in pure culture from the purulent discharge collected from a guinea pig bite wound in a previously healthy young patient. HKU75T was alpha-hemolytic on sheep blood agar and agglutinated with Lancefield group D and group G antisera. API 20 STREP showed that the most likely identity for HKU75T was S. suis I with 85.4% confidence while Vitek 2 showed that HKU75T was unidentifiable. MALDI-TOF MS identified HKU75T as Streptococcus suis (score of 1.86 only). 16S rRNA gene sequencing showed that HKU75T was most closely related to S. parasuis (98.3% nucleotide identity), whereas partial groEL and rpoB gene sequencing showed that it was most closely related to S. suis (81.8% and 89.8% nucleotide identity respectively). Whole genome sequencing and intergenomic distance determined by ANI revealed that there was <85% identity between the genome of HKU75T and those of all other known Streptococcus species. Genome classification using concatenated sequences of 92 bacterial core genes showed that HKU75T belonged to the Suis group. groEL gene sequences identical to that of HKU75T could be directly amplified from the oral cavities of the two guinea pigs owned by the patient. HKU75T is a novel Streptococcus species, which we propose to be named S. oriscaviae. The oral cavity of guinea pigs is presumably a reservoir of S. oriscaviae. Some of the reported S. suis strains isolated from clinical specimens may be S. oriscaviae. IMPORTANCE We reported the discovery of a novel Streptococcus species, propose to be named Streptococcus oriscaviae, from the pus collected from a guinea pig bite wound in a healthy young patient. The bacterium was initially misidentified as S. suis/S. parasuis by biochemical tests, mass spectrometry. and housekeeping genes sequencing. Its novelty was confirmed by whole genome sequencing. Comparative genomic studies showed that S. oriscaviae belongs to the Suis group. S. oriscaviae sequences were detected in the oral cavities of the two guinea pigs owned by the patient, suggesting that the oral cavity of guinea pigs could be a reservoir of S. oriscaviae. Some of the reported S. suis strains may be S. oriscaviae. Further studies are warranted to refine our knowledge on this novel Streptococcus species.
We reported the discovery of a novel Streptococcus species, propose to be named Streptococcus oriscaviae , from the pus collected from a guinea pig bite wound in a healthy young patient. The bacterium was initially misidentified as S. suis / S. parasuis by biochemical tests, mass spectrometry. and housekeeping genes sequencing. ABSTRACT Pet bite-related infections are commonly caused by the pet’s oral flora transmitted to the animal handlers through the bite wounds. In this study, we isolated a streptococcus , HKU75 T , in pure culture from the purulent discharge collected from a guinea pig bite wound in a previously healthy young patient. HKU75 T was alpha-hemolytic on sheep blood agar and agglutinated with Lancefield group D and group G antisera. API 20 STREP showed that the most likely identity for HKU75 T was S. suis I with 85.4% confidence while Vitek 2 showed that HKU75 T was unidentifiable. MALDI-TOF MS identified HKU75 T as Streptococcus suis (score of 1.86 only). 16S rRNA gene sequencing showed that HKU75 T was most closely related to S. parasuis (98.3% nucleotide identity), whereas partial groEL and rpoB gene sequencing showed that it was most closely related to S. suis (81.8% and 89.8% nucleotide identity respectively). Whole genome sequencing and intergenomic distance determined by ANI revealed that there was <85% identity between the genome of HKU75 T and those of all other known Streptococcus species. Genome classification using concatenated sequences of 92 bacterial core genes showed that HKU75 T belonged to the Suis group. groEL gene sequences identical to that of HKU75 T could be directly amplified from the oral cavities of the two guinea pigs owned by the patient. HKU75 T is a novel Streptococcus species, which we propose to be named S. oriscaviae . The oral cavity of guinea pigs is presumably a reservoir of S. oriscaviae . Some of the reported S. suis strains isolated from clinical specimens may be S. oriscaviae . IMPORTANCE We reported the discovery of a novel Streptococcus species, propose to be named Streptococcus oriscaviae , from the pus collected from a guinea pig bite wound in a healthy young patient. The bacterium was initially misidentified as S. suis / S. parasuis by biochemical tests, mass spectrometry. and housekeeping genes sequencing. Its novelty was confirmed by whole genome sequencing. Comparative genomic studies showed that S. oriscaviae belongs to the Suis group. S. oriscaviae sequences were detected in the oral cavities of the two guinea pigs owned by the patient, suggesting that the oral cavity of guinea pigs could be a reservoir of S. oriscaviae . Some of the reported S. suis strains may be S. oriscaviae . Further studies are warranted to refine our knowledge on this novel Streptococcus species.
Author Fung, Kitty S C
Li, Tsz Tuen
Fong, Jordan Y H
Chen, Jonathan H K
Foo, Chuen-Hing
Yao, Weiming
Teng, Jade L L
Luo, Ruibang
Ma, Yuanchao
Woo, Patrick C Y
Wong, Samson S Y
Lau, Susanna K P
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  givenname: Weiming
  surname: Yao
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  givenname: Samson S Y
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  givenname: Susanna K P
  surname: Lau
  fullname: Lau, Susanna K P
  organization: Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Konggrid.194645.b, Hong Kong, China
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  givenname: Patrick C Y
  orcidid: 0000-0001-9401-1832
  surname: Woo
  fullname: Woo, Patrick C Y
  organization: Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Konggrid.194645.b, Hong Kong, China
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Issue 3
Keywords infection
bite wound
guinea pigs
novel species
Streptococcus oriscaviae
Language English
License This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license. https://creativecommons.org/licenses/by/4.0
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The authors declare no conflict of interest.
Jade L. L. Teng, Yuanchao Ma, Jonathan H. K. Chen, and Ruibang Luo contributed equally to this article. Author order was determined by the corresponding authors.
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Snippet Pet bite-related infections are commonly caused by the pet's oral flora transmitted to the animal handlers through the bite wounds. In this study, we isolated...
Pet bite-related infections are commonly caused by the pet’s oral flora transmitted to the animal handlers through the bite wounds. In this study, we isolated...
We reported the discovery of a novel Streptococcus species, propose to be named Streptococcus oriscaviae , from the pus collected from a guinea pig bite wound...
ABSTRACT Pet bite-related infections are commonly caused by the pet’s oral flora transmitted to the animal handlers through the bite wounds. In this study, we...
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StartPage e0001422
SubjectTerms bite wound
Clinical Microbiology
guinea pigs
infection
novel species
Research Article
Streptococcus oriscaviae
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Title Streptococcus oriscaviae sp. nov. Infection Associated with Guinea Pigs
URI https://www.ncbi.nlm.nih.gov/pubmed/35510851
https://journals.asm.org/doi/10.1128/spectrum.00014-22
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