Preserve a Voucher Specimen! The Critical Need for Integrating Natural History Collections in Infectious Disease Studies

Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no...

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Bibliographic Details
Published inmBio Vol. 12; no. 1
Main Authors Thompson, Cody W., Phelps, Kendra L., Allard, Marc W., Cook, Joseph A., Dunnum, Jonathan L., Ferguson, Adam W., Gelang, Magnus, Khan, Faisal Ali Anwarali, Paul, Deborah L., Reeder, DeeAnn M., Simmons, Nancy B., Vanhove, Maarten P. M., Webala, Paul W., Weksler, Marcelo, Kilpatrick, C. William
Format Journal Article
LanguageEnglish
Published United States American Society for Microbiology 12.01.2021
Subjects
Animals
Biodiversity
Biomedical Research - standards
Biomedical Research - trends
Communicable Diseases - microbiology
Communicable Diseases - parasitology
Communicable Diseases - pathology
Communicable Diseases - virology
COVID-19 - pathology
COVID-19 - virology
Host-Microbe Biology
Host-Pathogen Interactions
Humans
Minireview
Museums - standards
Natural History - standards
SARS-CoV-2 - classification
SARS-CoV-2 - physiology
Specimen Handling
Zoonoses - microbiology
Zoonoses - parasitology
Zoonoses - pathology
Zoonoses - virology
zoonoses
coronaviruses
biorepositories
museums
holistic specimen
extended specimen
Online AccessGet full text
ISSN2161-2129
2150-7511
2150-7511
DOI10.1128/mBio.02698-20

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Abstract Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no vouchered specimens exist to corroborate host species identification for most of these pathogens. Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no vouchered specimens exist to corroborate host species identification for most of these pathogens. This most basic information is critical to the full understanding and mitigation of emerging zoonotic diseases. To overcome this hurdle, we recommend that host-pathogen researchers adopt vouchering practices and collaborate with natural history collections to permanently archive microbiological samples and host specimens. Vouchered specimens and associated samples provide both repeatability and extension to host-pathogen studies, and using them mobilizes a large workforce (i.e., biodiversity scientists) to assist in pandemic preparedness. We review several well-known examples that successfully integrate host-pathogen research with natural history collections (e.g., yellow fever, hantaviruses, helminths). However, vouchering remains an underutilized practice in such studies. Using an online survey, we assessed vouchering practices used by microbiologists (e.g., bacteriologists, parasitologists, virologists) in host-pathogen research. A much greater number of respondents permanently archive microbiological samples than archive host specimens, and less than half of respondents voucher host specimens from which microbiological samples were lethally collected. To foster collaborations between microbiologists and natural history collections, we provide recommendations for integrating vouchering techniques and archiving of microbiological samples into host-pathogen studies. This integrative approach exemplifies the premise underlying One Health initiatives, providing critical infrastructure for addressing related issues ranging from public health to global climate change and the biodiversity crisis.
AbstractList Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no vouchered specimens exist to corroborate host species identification for most of these pathogens.
Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no vouchered specimens exist to corroborate host species identification for most of these pathogens. Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no vouchered specimens exist to corroborate host species identification for most of these pathogens. This most basic information is critical to the full understanding and mitigation of emerging zoonotic diseases. To overcome this hurdle, we recommend that host-pathogen researchers adopt vouchering practices and collaborate with natural history collections to permanently archive microbiological samples and host specimens. Vouchered specimens and associated samples provide both repeatability and extension to host-pathogen studies, and using them mobilizes a large workforce (i.e., biodiversity scientists) to assist in pandemic preparedness. We review several well-known examples that successfully integrate host-pathogen research with natural history collections (e.g., yellow fever, hantaviruses, helminths). However, vouchering remains an underutilized practice in such studies. Using an online survey, we assessed vouchering practices used by microbiologists (e.g., bacteriologists, parasitologists, virologists) in host-pathogen research. A much greater number of respondents permanently archive microbiological samples than archive host specimens, and less than half of respondents voucher host specimens from which microbiological samples were lethally collected. To foster collaborations between microbiologists and natural history collections, we provide recommendations for integrating vouchering techniques and archiving of microbiological samples into host-pathogen studies. This integrative approach exemplifies the premise underlying One Health initiatives, providing critical infrastructure for addressing related issues ranging from public health to global climate change and the biodiversity crisis.
Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no vouchered specimens exist to corroborate host species identification for most of these pathogens. This most basic information is critical to the full understanding and mitigation of emerging zoonotic diseases. To overcome this hurdle, we recommend that host-pathogen researchers adopt vouchering practices and collaborate with natural history collections to permanently archive microbiological samples and host specimens. Vouchered specimens and associated samples provide both repeatability and extension to host-pathogen studies, and using them mobilizes a large workforce (i.e., biodiversity scientists) to assist in pandemic preparedness. We review several well-known examples that successfully integrate host-pathogen research with natural history collections (e.g., yellow fever, hantaviruses, helminths). However, vouchering remains an underutilized practice in such studies. Using an online survey, we assessed vouchering practices used by microbiologists (e.g., bacteriologists, parasitologists, virologists) in host-pathogen research. A much greater number of respondents permanently archive microbiological samples than archive host specimens, and less than half of respondents voucher host specimens from which microbiological samples were lethally collected. To foster collaborations between microbiologists and natural history collections, we provide recommendations for integrating vouchering techniques and archiving of microbiological samples into host-pathogen studies. This integrative approach exemplifies the premise underlying One Health initiatives, providing critical infrastructure for addressing related issues ranging from public health to global climate change and the biodiversity crisis.Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no vouchered specimens exist to corroborate host species identification for most of these pathogens. This most basic information is critical to the full understanding and mitigation of emerging zoonotic diseases. To overcome this hurdle, we recommend that host-pathogen researchers adopt vouchering practices and collaborate with natural history collections to permanently archive microbiological samples and host specimens. Vouchered specimens and associated samples provide both repeatability and extension to host-pathogen studies, and using them mobilizes a large workforce (i.e., biodiversity scientists) to assist in pandemic preparedness. We review several well-known examples that successfully integrate host-pathogen research with natural history collections (e.g., yellow fever, hantaviruses, helminths). However, vouchering remains an underutilized practice in such studies. Using an online survey, we assessed vouchering practices used by microbiologists (e.g., bacteriologists, parasitologists, virologists) in host-pathogen research. A much greater number of respondents permanently archive microbiological samples than archive host specimens, and less than half of respondents voucher host specimens from which microbiological samples were lethally collected. To foster collaborations between microbiologists and natural history collections, we provide recommendations for integrating vouchering techniques and archiving of microbiological samples into host-pathogen studies. This integrative approach exemplifies the premise underlying One Health initiatives, providing critical infrastructure for addressing related issues ranging from public health to global climate change and the biodiversity crisis.
Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the causal agent of COVID-19, remains unknown. Unfortunately, similar problems exist for other betacoronaviruses, and no vouchered specimens exist to corroborate host species identification for most of these pathogens. This most basic information is critical to the full understanding and mitigation of emerging zoonotic diseases. To overcome this hurdle, we recommend that host-pathogen researchers adopt vouchering practices and collaborate with natural history collections to permanently archive microbiological samples and host specimens. Vouchered specimens and associated samples provide both repeatability and extension to host-pathogen studies, and using them mobilizes a large workforce (i.e., biodiversity scientists) to assist in pandemic preparedness. We review several well-known examples that successfully integrate host-pathogen research with natural history collections (e.g., yellow fever, hantaviruses, helminths). However, vouchering remains an underutilized practice in such studies. Using an online survey, we assessed vouchering practices used by microbiologists (e.g., bacteriologists, parasitologists, virologists) in host-pathogen research. A much greater number of respondents permanently archive microbiological samples than archive host specimens, and less than half of respondents voucher host specimens from which microbiological samples were lethally collected. To foster collaborations between microbiologists and natural history collections, we provide recommendations for integrating vouchering techniques and archiving of microbiological samples into host-pathogen studies. This integrative approach exemplifies the premise underlying One Health initiatives, providing critical infrastructure for addressing related issues ranging from public health to global climate change and the biodiversity crisis.
Author Ferguson, Adam W.
Paul, Deborah L.
Simmons, Nancy B.
Webala, Paul W.
Dunnum, Jonathan L.
Reeder, DeeAnn M.
Allard, Marc W.
Cook, Joseph A.
Vanhove, Maarten P. M.
Phelps, Kendra L.
Gelang, Magnus
Khan, Faisal Ali Anwarali
Kilpatrick, C. William
Weksler, Marcelo
Thompson, Cody W.
Author_xml – sequence: 1
  givenname: Cody W.
  orcidid: 0000-0002-6686-6056
  surname: Thompson
  fullname: Thompson, Cody W.
  organization: Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan, USA, Museum of Zoology, University of Michigan, Ann Arbor, Michigan, USA
– sequence: 2
  givenname: Kendra L.
  orcidid: 0000-0002-3120-4802
  surname: Phelps
  fullname: Phelps, Kendra L.
  organization: EcoHealth Alliance, New York, New York, USA
– sequence: 3
  givenname: Marc W.
  surname: Allard
  fullname: Allard, Marc W.
  organization: Center of Food Safety and Applied Nutrition, U. S. Food and Drug Administration, College Park, Maryland, USA
– sequence: 4
  givenname: Joseph A.
  surname: Cook
  fullname: Cook, Joseph A.
  organization: Museum of Southwestern Biology, Biology Department, University of New Mexico, Albuquerque, New Mexico, USA
– sequence: 5
  givenname: Jonathan L.
  surname: Dunnum
  fullname: Dunnum, Jonathan L.
  organization: Museum of Southwestern Biology, Biology Department, University of New Mexico, Albuquerque, New Mexico, USA
– sequence: 6
  givenname: Adam W.
  surname: Ferguson
  fullname: Ferguson, Adam W.
  organization: Gantz Family Collections Center, Field Museum of Natural History, Chicago, Illinois, USA
– sequence: 7
  givenname: Magnus
  surname: Gelang
  fullname: Gelang, Magnus
  organization: Gothenburg Natural History Museum, Gothenburg, Sweden, Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
– sequence: 8
  givenname: Faisal Ali Anwarali
  surname: Khan
  fullname: Khan, Faisal Ali Anwarali
  organization: Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Malaysia
– sequence: 9
  givenname: Deborah L.
  surname: Paul
  fullname: Paul, Deborah L.
  organization: Florida State University, Tallahassee, Florida, USA, Species File Group, University of Illinois, Urbana-Champaign, Illinois, USA
– sequence: 10
  givenname: DeeAnn M.
  surname: Reeder
  fullname: Reeder, DeeAnn M.
  organization: Bucknell University, Lewisburg, Pennsylvania, USA
– sequence: 11
  givenname: Nancy B.
  surname: Simmons
  fullname: Simmons, Nancy B.
  organization: Department of Mammalogy, Division of Vertebrate Zoology, American Museum of Natural History, New York, New York, USA
– sequence: 12
  givenname: Maarten P. M.
  surname: Vanhove
  fullname: Vanhove, Maarten P. M.
  organization: Hasselt University, Centre for Environmental Sciences, Research Group Zoology: Biodiversity and Toxicology, Diepenbeek, Belgium
– sequence: 13
  givenname: Paul W.
  surname: Webala
  fullname: Webala, Paul W.
  organization: Department of Forestry and Wildlife Management, Maasai Mara University, Narok, Kenya
– sequence: 14
  givenname: Marcelo
  orcidid: 0000-0001-8111-4779
  surname: Weksler
  fullname: Weksler, Marcelo
  organization: Departamento de Vertebrados, Museu Nacional, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
– sequence: 15
  givenname: C. William
  surname: Kilpatrick
  fullname: Kilpatrick, C. William
  organization: University of Vermont, Burlington, Vermont, USA
BackLink https://www.ncbi.nlm.nih.gov/pubmed/33436435$$D View this record in MEDLINE/PubMed
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Keywords zoonoses
coronaviruses
biorepositories
museums
holistic specimen
extended specimen
Language English
License Copyright © 2021 Thompson et al.
This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license. https://creativecommons.org/licenses/by/4.0
This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
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content type line 23
Cody W. Thompson and Kendra L. Phelps contributed equally as first authors. First author order was determined based on best out of three rounds of “rock-paper-scissors.”
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Snippet Despite being nearly 10 months into the COVID-19 (coronavirus disease 2019) pandemic, the definitive animal host for SARS-CoV-2 (severe acute respiratory...
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SubjectTerms Animals
Biodiversity
Biomedical Research - standards
Biomedical Research - trends
Communicable Diseases - microbiology
Communicable Diseases - parasitology
Communicable Diseases - pathology
Communicable Diseases - virology
COVID-19 - pathology
COVID-19 - virology
Host-Microbe Biology
Host-Pathogen Interactions
Humans
Minireview
Museums - standards
Natural History - standards
SARS-CoV-2 - classification
SARS-CoV-2 - physiology
Specimen Handling
Zoonoses - microbiology
Zoonoses - parasitology
Zoonoses - pathology
Zoonoses - virology
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Title Preserve a Voucher Specimen! The Critical Need for Integrating Natural History Collections in Infectious Disease Studies
URI https://www.ncbi.nlm.nih.gov/pubmed/33436435
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Volume 12
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