In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
In the work presented here, we designed and developed two easy-to-use Web tools for in silico detection and characterization of whole-genome sequence (WGS) and whole-plasmid sequence data from members of the family Enterobacteriaceae . These tools will facilitate bacterial typing based on draft geno...
Saved in:
| Published in | Antimicrobial agents and chemotherapy Vol. 58; no. 7; pp. 3895 - 3903 |
|---|---|
| Main Authors | , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Washington, DC
American Society for Microbiology
01.07.2014
|
| Subjects | |
| Online Access | Get full text |
| ISSN | 0066-4804 1098-6596 1098-6596 |
| DOI | 10.1128/AAC.02412-14 |
Cover
| Abstract | In the work presented here, we designed and developed two easy-to-use Web tools for
in silico
detection and characterization of whole-genome sequence (WGS) and whole-plasmid sequence data from members of the family
Enterobacteriaceae
. These tools will facilitate bacterial typing based on draft genomes of multidrug-resistant
Enterobacteriaceae
species by the rapid detection of known plasmid types. Replicon sequences from 559 fully sequenced plasmids associated with the family
Enterobacteriaceae
in the NCBI nucleotide database were collected to build a consensus database for integration into a Web tool called PlasmidFinder that can be used for replicon sequence analysis of raw, contig group, or completely assembled and closed plasmid sequencing data. The PlasmidFinder database currently consists of 116 replicon sequences that match with at least at 80% nucleotide identity all replicon sequences identified in the 559 fully sequenced plasmids. For plasmid multilocus sequence typing (pMLST) analysis, a database that is updated weekly was generated from
www.pubmlst.org
and integrated into a Web tool called pMLST. Both databases were evaluated using draft genomes from a collection of
Salmonella enterica
serovar Typhimurium isolates. PlasmidFinder identified a total of 103 replicons and between zero and five different plasmid replicons within each of 49
S
. Typhimurium draft genomes tested. The pMLST Web tool was able to subtype genomic sequencing data of plasmids, revealing both known plasmid sequence types (STs) and new alleles and ST variants. In conclusion, testing of the two Web tools using both fully assembled plasmid sequences and WGS-generated draft genomes showed them to be able to detect a broad variety of plasmids that are often associated with antimicrobial resistance in clinically relevant bacterial pathogens. |
|---|---|
| AbstractList | In the work presented here, we designed and developed two easy-to-use Web tools for
in silico
detection and characterization of whole-genome sequence (WGS) and whole-plasmid sequence data from members of the family
Enterobacteriaceae
. These tools will facilitate bacterial typing based on draft genomes of multidrug-resistant
Enterobacteriaceae
species by the rapid detection of known plasmid types. Replicon sequences from 559 fully sequenced plasmids associated with the family
Enterobacteriaceae
in the NCBI nucleotide database were collected to build a consensus database for integration into a Web tool called PlasmidFinder that can be used for replicon sequence analysis of raw, contig group, or completely assembled and closed plasmid sequencing data. The PlasmidFinder database currently consists of 116 replicon sequences that match with at least at 80% nucleotide identity all replicon sequences identified in the 559 fully sequenced plasmids. For plasmid multilocus sequence typing (pMLST) analysis, a database that is updated weekly was generated from
www.pubmlst.org
and integrated into a Web tool called pMLST. Both databases were evaluated using draft genomes from a collection of
Salmonella enterica
serovar Typhimurium isolates. PlasmidFinder identified a total of 103 replicons and between zero and five different plasmid replicons within each of 49
S
. Typhimurium draft genomes tested. The pMLST Web tool was able to subtype genomic sequencing data of plasmids, revealing both known plasmid sequence types (STs) and new alleles and ST variants. In conclusion, testing of the two Web tools using both fully assembled plasmid sequences and WGS-generated draft genomes showed them to be able to detect a broad variety of plasmids that are often associated with antimicrobial resistance in clinically relevant bacterial pathogens. In the work presented here, we designed and developed two easy-to-use Web tools for in silico detection and characterization of whole-genome sequence (WGS) and whole-plasmid sequence data from members of the family Enterobacteriaceae. These tools will facilitate bacterial typing based on draft genomes of multidrug-resistant Enterobacteriaceae species by the rapid detection of known plasmid types. Replicon sequences from 559 fully sequenced plasmids associated with the family Enterobacteriaceae in the NCBI nucleotide database were collected to build a consensus database for integration into a Web tool called PlasmidFinder that can be used for replicon sequence analysis of raw, contig group, or completely assembled and closed plasmid sequencing data. The PlasmidFinder database currently consists of 116 replicon sequences that match with at least at 80% nucleotide identity all replicon sequences identified in the 559 fully sequenced plasmids. For plasmid multilocus sequence typing (pMLST) analysis, a database that is updated weekly was generated from www.pubmlst.org and integrated into a Web tool called pMLST. Both databases were evaluated using draft genomes from a collection of Salmonella enterica serovar Typhimurium isolates. PlasmidFinder identified a total of 103 replicons and between zero and five different plasmid replicons within each of 49 S. Typhimurium draft genomes tested. The pMLST Web tool was able to subtype genomic sequencing data of plasmids, revealing both known plasmid sequence types (STs) and new alleles and ST variants. In conclusion, testing of the two Web tools using both fully assembled plasmid sequences and WGS-generated draft genomes showed them to be able to detect a broad variety of plasmids that are often associated with antimicrobial resistance in clinically relevant bacterial pathogens.In the work presented here, we designed and developed two easy-to-use Web tools for in silico detection and characterization of whole-genome sequence (WGS) and whole-plasmid sequence data from members of the family Enterobacteriaceae. These tools will facilitate bacterial typing based on draft genomes of multidrug-resistant Enterobacteriaceae species by the rapid detection of known plasmid types. Replicon sequences from 559 fully sequenced plasmids associated with the family Enterobacteriaceae in the NCBI nucleotide database were collected to build a consensus database for integration into a Web tool called PlasmidFinder that can be used for replicon sequence analysis of raw, contig group, or completely assembled and closed plasmid sequencing data. The PlasmidFinder database currently consists of 116 replicon sequences that match with at least at 80% nucleotide identity all replicon sequences identified in the 559 fully sequenced plasmids. For plasmid multilocus sequence typing (pMLST) analysis, a database that is updated weekly was generated from www.pubmlst.org and integrated into a Web tool called pMLST. Both databases were evaluated using draft genomes from a collection of Salmonella enterica serovar Typhimurium isolates. PlasmidFinder identified a total of 103 replicons and between zero and five different plasmid replicons within each of 49 S. Typhimurium draft genomes tested. The pMLST Web tool was able to subtype genomic sequencing data of plasmids, revealing both known plasmid sequence types (STs) and new alleles and ST variants. In conclusion, testing of the two Web tools using both fully assembled plasmid sequences and WGS-generated draft genomes showed them to be able to detect a broad variety of plasmids that are often associated with antimicrobial resistance in clinically relevant bacterial pathogens. In the work presented here, we designed and developed two easy-to-use Web tools for in silico detection and characterization of whole-genome sequence (WGS) and whole-plasmid sequence data from members of the family Enterobacteriaceae. These tools will facilitate bacterial typing based on draft genomes of multidrug-resistant Enterobacteriaceae species by the rapid detection of known plasmid types. Replicon sequences from 559 fully sequenced plasmids associated with the family Enterobacteriaceae in the NCBI nucleotide database were collected to build a consensus database for integration into a Web tool called PlasmidFinder that can be used for replicon sequence analysis of raw, contig group, or completely assembled and closed plasmid sequencing data. The PlasmidFinder database currently consists of 116 replicon sequences that match with at least at 80% nucleotide identity all replicon sequences identified in the 559 fully sequenced plasmids. For plasmid multilocus sequence typing (pMLST) analysis, a database that is updated weekly was generated from www.pubmlst.org and integrated into a Web tool called pMLST. Both databases were evaluated using draft genomes from a collection of Salmonella enterica serovar Typhimurium isolates. PlasmidFinder identified a total of 103 replicons and between zero and five different plasmid replicons within each of 49 S. Typhimurium draft genomes tested. The pMLST Web tool was able to subtype genomic sequencing data of plasmids, revealing both known plasmid sequence types (STs) and new alleles and ST variants. In conclusion, testing of the two Web tools using both fully assembled plasmid sequences and WGS-generated draft genomes showed them to be able to detect a broad variety of plasmids that are often associated with antimicrobial resistance in clinically relevant bacterial pathogens. |
| Author | Møller Aarestrup, Frank Zankari, Ea García-Fernández, Aurora Villa, Laura Voldby Larsen, Mette Lund, Ole Hasman, Henrik Carattoli, Alessandra |
| Author_xml | – sequence: 1 givenname: Alessandra surname: Carattoli fullname: Carattoli, Alessandra organization: Department of Infectious, Parasitic and Immuno-Mediated Diseases, Istituto Superiore di Sanità, Rome, Italy – sequence: 2 givenname: Ea surname: Zankari fullname: Zankari, Ea organization: Danish Technical University, National Food Institute, Division for Epidemiology and Microbial Genomics, Lyngby, Denmark – sequence: 3 givenname: Aurora surname: García-Fernández fullname: García-Fernández, Aurora organization: Department of Infectious, Parasitic and Immuno-Mediated Diseases, Istituto Superiore di Sanità, Rome, Italy – sequence: 4 givenname: Mette surname: Voldby Larsen fullname: Voldby Larsen, Mette organization: Danish Technical University, Center for Biological Sequence Analysis, Department of Systems Biology, Lyngby, Denmark – sequence: 5 givenname: Ole surname: Lund fullname: Lund, Ole organization: Danish Technical University, Center for Biological Sequence Analysis, Department of Systems Biology, Lyngby, Denmark – sequence: 6 givenname: Laura surname: Villa fullname: Villa, Laura organization: Department of Infectious, Parasitic and Immuno-Mediated Diseases, Istituto Superiore di Sanità, Rome, Italy – sequence: 7 givenname: Frank surname: Møller Aarestrup fullname: Møller Aarestrup, Frank organization: Danish Technical University, National Food Institute, Division for Epidemiology and Microbial Genomics, Lyngby, Denmark – sequence: 8 givenname: Henrik surname: Hasman fullname: Hasman, Henrik organization: Danish Technical University, National Food Institute, Division for Epidemiology and Microbial Genomics, Lyngby, Denmark |
| BackLink | http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=28577247$$DView record in Pascal Francis https://www.ncbi.nlm.nih.gov/pubmed/24777092$$D View this record in MEDLINE/PubMed |
| BookMark | eNqNkd1rFDEUxYNU7Lb65rPMi6DQqflO5kVY1lYLFYXW55DN3tSUbLKdzAj97812p36UCj6Fe_PLuTn3HKC9lBMg9JLgY0KofjefL44x5YS2hD9BM4I73UrRyT00w1jKlmvM99FBKde41qLDz9A-5Uop3NEZgrPUXIQYXG4-wABuCDk1Nq2ay9tNSFdN9s3XaMs6rEozlm1nKk9DWkF_h06d5vMYhxCzG0tzATcjJAeTzHP01NtY4MV0HqJvpyeXi0_t-ZePZ4v5eWu5JkPLPMNKgl3C0nnvGKVYgvcdBSG8cr7Dym3tMCEAmCZUaK8JY3jJlBZaskP0fqe7GZdrWDlIQ2-j2fRhbftbk20wf9-k8N1c5R-GY6kFE1XgzSTQ5-qgDGYdioMYbYI8FkME7yQjVKn_QZWWkjJd0bc7tO6Jmus89qluwRBstgmamqC5S9AQXtlXf1r49ff7yCrwegJscTb63iYXym9OC6UqXDm641yfS-nBGxcGu823Og_xX9OPHjy6130U_wksjMNd |
| CODEN | AACHAX |
| CitedBy_id | crossref_primary_10_1016_j_scitotenv_2023_167100 crossref_primary_10_1038_s41467_020_17278_2 crossref_primary_10_3201_eid2811_212066 crossref_primary_10_1101_gr_275894_121 crossref_primary_10_1007_s12033_021_00424_6 crossref_primary_10_1128_MRA_01447_19 crossref_primary_10_1128_spectrum_00565_24 crossref_primary_10_1371_journal_pone_0271652 crossref_primary_10_1128_aac_00906_24 crossref_primary_10_3390_v14020342 crossref_primary_10_3389_fmicb_2023_1183984 crossref_primary_10_3390_microorganisms8111636 crossref_primary_10_3390_antibiotics11091152 crossref_primary_10_1126_science_aad5901 crossref_primary_10_1128_AAC_02091_17 crossref_primary_10_1038_s44259_024_00038_3 crossref_primary_10_1186_s13073_021_00960_5 crossref_primary_10_1093_jac_dkx538 crossref_primary_10_3390_pathogens11121394 crossref_primary_10_3389_fmicb_2021_709418 crossref_primary_10_1016_j_jksus_2024_103111 crossref_primary_10_1016_j_microb_2025_100274 crossref_primary_10_3390_antibiotics11091170 crossref_primary_10_3390_antibiotics11091171 crossref_primary_10_1111_1471_0307_12980 crossref_primary_10_3390_antibiotics10111408 crossref_primary_10_1016_j_micinf_2023_105273 crossref_primary_10_3390_antibiotics10030313 crossref_primary_10_1136_vetreco_2018_000307 crossref_primary_10_1128_genomeA_00842_17 crossref_primary_10_1186_s12864_020_06967_3 crossref_primary_10_1038_s43856_024_00439_5 crossref_primary_10_1038_s42003_023_05365_1 crossref_primary_10_1016_j_meegid_2024_105656 crossref_primary_10_3390_antibiotics14010095 crossref_primary_10_1016_j_envres_2020_110487 crossref_primary_10_1016_j_micinf_2023_105285 crossref_primary_10_1128_spectrum_04011_22 crossref_primary_10_1186_s12863_023_01116_7 crossref_primary_10_1590_1678_4685_gmb_2021_0201 crossref_primary_10_3390_microorganisms8121892 crossref_primary_10_1128_mSystems_00190_20 crossref_primary_10_1093_infdis_jiae616 crossref_primary_10_1128_AAC_00278_18 crossref_primary_10_1128_AAC_02513_18 crossref_primary_10_1128_mSystems_00190_16 crossref_primary_10_1136_bmjgh_2021_005659 crossref_primary_10_1038_s41598_024_59870_2 crossref_primary_10_3389_fmicb_2023_1118056 crossref_primary_10_1016_j_microb_2025_100268 crossref_primary_10_1038_s41564_021_01020_9 crossref_primary_10_1016_j_cmi_2020_01_033 crossref_primary_10_1016_j_meegid_2021_104771 crossref_primary_10_3389_fmicb_2019_02001 crossref_primary_10_3389_fmicb_2024_1365011 crossref_primary_10_2147_IDR_S277997 crossref_primary_10_3390_microorganisms12020244 crossref_primary_10_1128_mbio_03191_22 crossref_primary_10_1128_spectrum_01204_22 crossref_primary_10_1016_j_gene_2023_147786 crossref_primary_10_1089_mdr_2022_0143 crossref_primary_10_1128_mBio_00742_16 crossref_primary_10_1099_jmm_0_000817 crossref_primary_10_1016_j_ijfoodmicro_2018_03_011 crossref_primary_10_3389_fmicb_2019_00276 crossref_primary_10_1128_spectrum_03969_23 crossref_primary_10_1186_s12864_018_4976_3 crossref_primary_10_2147_IDR_S448256 crossref_primary_10_1128_aac_02322_21 crossref_primary_10_1128_mra_00405_22 crossref_primary_10_2807_1560_7917_ES_2016_21_9_30149 crossref_primary_10_1016_j_envres_2018_09_022 crossref_primary_10_1371_journal_pgen_1009919 crossref_primary_10_1128_MRA_00489_19 crossref_primary_10_1128_spectrum_01788_21 crossref_primary_10_1128_AAC_00840_16 crossref_primary_10_3390_microorganisms12030494 crossref_primary_10_1371_journal_pone_0184720 crossref_primary_10_2807_1560_7917_ES_2017_22_31_30589 crossref_primary_10_1016_j_heliyon_2024_e34473 crossref_primary_10_2807_1560_7917_ES_2017_22_31_30586 crossref_primary_10_2807_1560_7917_ES_2017_22_31_30584 crossref_primary_10_1016_j_scitotenv_2021_148259 crossref_primary_10_1128_AAC_01200_21 crossref_primary_10_1016_j_scitotenv_2023_161805 crossref_primary_10_1016_j_ijbiomac_2018_05_119 crossref_primary_10_3389_fcimb_2020_00492 crossref_primary_10_1128_MRA_00707_21 crossref_primary_10_3389_fvets_2020_00617 crossref_primary_10_1016_j_scitotenv_2021_150566 crossref_primary_10_1128_spectrum_02554_22 crossref_primary_10_1073_pnas_1616248114 crossref_primary_10_1016_j_jgar_2019_10_003 crossref_primary_10_3389_fmicb_2019_02826 crossref_primary_10_1128_mra_00021_22 crossref_primary_10_1128_mra_01043_22 crossref_primary_10_3389_fmicb_2019_02824 crossref_primary_10_1016_j_jgar_2021_07_006 crossref_primary_10_1128_mra_00021_24 crossref_primary_10_3390_microorganisms11030667 crossref_primary_10_1371_journal_pone_0233313 crossref_primary_10_1128_genomeA_01173_17 crossref_primary_10_1007_s12223_019_00757_5 crossref_primary_10_1128_AAC_02729_16 crossref_primary_10_1016_j_crmicr_2021_100074 crossref_primary_10_1111_1462_2920_16540 crossref_primary_10_1038_s41467_024_48206_3 crossref_primary_10_1016_j_jgar_2016_12_009 crossref_primary_10_1016_j_jgar_2016_12_004 crossref_primary_10_1128_AAC_02042_19 crossref_primary_10_1186_s12941_020_00366_y crossref_primary_10_3390_antibiotics13060531 crossref_primary_10_1038_s41467_024_48219_y crossref_primary_10_1093_nar_gkac321 crossref_primary_10_1128_AAC_02128_17 crossref_primary_10_3389_fmicb_2022_1043529 crossref_primary_10_3390_antibiotics11050689 crossref_primary_10_1007_s12602_025_10484_8 crossref_primary_10_3389_fmicb_2023_1254896 crossref_primary_10_1002_mbo3_915 crossref_primary_10_1128_AAC_02501_17 crossref_primary_10_3389_fmicb_2021_667096 crossref_primary_10_1371_journal_pone_0304250 crossref_primary_10_1128_AAC_00536_17 crossref_primary_10_1128_MRA_01054_18 crossref_primary_10_1371_journal_pone_0191042 crossref_primary_10_1016_j_cub_2018_05_058 crossref_primary_10_1016_j_crmicr_2021_100055 crossref_primary_10_1016_j_dib_2023_108932 crossref_primary_10_1128_aem_00044_22 crossref_primary_10_1016_j_foodcont_2020_107810 crossref_primary_10_1089_mdr_2019_0306 crossref_primary_10_1128_mBio_00652_19 crossref_primary_10_1186_s12863_022_01074_6 crossref_primary_10_1128_spectrum_02100_24 crossref_primary_10_3389_fmicb_2019_02817 crossref_primary_10_1016_j_micres_2020_126449 crossref_primary_10_3390_pathogens10040482 crossref_primary_10_1128_AEM_00485_21 crossref_primary_10_1111_1471_0307_70002 crossref_primary_10_1128_AAC_00663_17 crossref_primary_10_1016_j_jfp_2024_100236 crossref_primary_10_1038_s41598_018_22943_0 crossref_primary_10_1038_s41598_022_20342_0 crossref_primary_10_3390_pathogens10040475 crossref_primary_10_1016_j_cofs_2021_12_002 crossref_primary_10_1128_mra_00965_22 crossref_primary_10_1186_s13100_025_00351_2 crossref_primary_10_1038_s42003_021_01905_9 crossref_primary_10_1093_nar_gkad678 crossref_primary_10_3390_antibiotics14010067 crossref_primary_10_1094_PHYTO_08_22_0279_A crossref_primary_10_1128_spectrum_01928_24 crossref_primary_10_1128_genomeA_01632_15 crossref_primary_10_1016_j_cimid_2021_101697 crossref_primary_10_1128_spectrum_04645_22 crossref_primary_10_3390_diagnostics12010213 crossref_primary_10_1128_mra_00057_22 crossref_primary_10_3389_fmicb_2017_02318 crossref_primary_10_1371_journal_pntd_0011864 crossref_primary_10_1007_s10123_023_00346_0 crossref_primary_10_1128_AAC_01858_20 crossref_primary_10_1099_mgen_0_000385 crossref_primary_10_3390_ijms241713518 crossref_primary_10_3389_fmicb_2022_1027494 crossref_primary_10_1038_s41598_019_52832_z crossref_primary_10_1186_s13756_023_01233_z crossref_primary_10_1186_s12879_017_2760_7 crossref_primary_10_3389_fmicb_2021_812436 crossref_primary_10_1089_mdr_2018_0098 crossref_primary_10_1186_s12866_024_03561_5 crossref_primary_10_1089_vbz_2018_2398 crossref_primary_10_3389_fmicb_2015_01354 crossref_primary_10_3390_antibiotics14010042 crossref_primary_10_1016_j_crmicr_2021_100093 crossref_primary_10_1016_j_ijfoodmicro_2020_109028 crossref_primary_10_1093_femsre_fuaa025 crossref_primary_10_1099_mgen_0_000398 crossref_primary_10_3389_fmicb_2022_1032833 crossref_primary_10_3390_antibiotics11050615 crossref_primary_10_1128_genomeA_00830_17 crossref_primary_10_1128_spectrum_03994_23 crossref_primary_10_1093_jac_dkac121 crossref_primary_10_1128_spectrum_00577_21 crossref_primary_10_1128_AAC_00418_17 crossref_primary_10_1099_mic_0_000862 crossref_primary_10_1128_msystems_00306_24 crossref_primary_10_1038_s41467_020_19185_y crossref_primary_10_3390_jcm14030931 crossref_primary_10_1016_j_jgar_2021_07_019 crossref_primary_10_1371_journal_pone_0233315 crossref_primary_10_1016_j_meegid_2019_103916 crossref_primary_10_3390_antibiotics11050625 crossref_primary_10_1093_jac_dkac114 crossref_primary_10_1186_s13099_020_00375_4 crossref_primary_10_1016_j_crmicr_2021_100083 crossref_primary_10_1016_j_ebiom_2024_105097 crossref_primary_10_1186_s12859_024_05792_9 crossref_primary_10_1099_mic_0_000895 crossref_primary_10_1007_s12602_021_09860_x crossref_primary_10_3389_fmicb_2021_762509 crossref_primary_10_1128_MRA_01063_20 crossref_primary_10_1016_j_diagmicrobio_2021_115422 crossref_primary_10_1128_mSphere_00162_21 crossref_primary_10_1128_MRA_01075_19 crossref_primary_10_1093_jacamr_dlae109 crossref_primary_10_1093_jacamr_dlae102 crossref_primary_10_1007_s10096_020_04055_8 crossref_primary_10_1093_nar_gkab064 crossref_primary_10_1186_s12866_020_01821_8 crossref_primary_10_3389_fmicb_2021_704636 crossref_primary_10_3390_genes13091624 crossref_primary_10_3390_pathogens13010023 crossref_primary_10_26508_lsa_202201637 crossref_primary_10_1128_MRA_00768_20 crossref_primary_10_3390_genes14010036 crossref_primary_10_1128_spectrum_02557_22 crossref_primary_10_1038_s41467_020_15123_0 crossref_primary_10_1128_genomeA_00067_16 crossref_primary_10_1038_s41579_021_00534_7 crossref_primary_10_1093_nar_gkab1115 crossref_primary_10_3390_pathogens8040212 crossref_primary_10_1038_s41598_017_18273_2 crossref_primary_10_1093_molbev_msy123 crossref_primary_10_1128_spectrum_00262_24 crossref_primary_10_1186_s12859_021_04299_x crossref_primary_10_1099_mgen_0_000474 crossref_primary_10_1128_AEM_00488_21 crossref_primary_10_1038_s41467_021_22849_y crossref_primary_10_1093_jac_dkz397 crossref_primary_10_3390_pathogens11050545 crossref_primary_10_1089_mdr_2019_0384 crossref_primary_10_1371_journal_pone_0231503 crossref_primary_10_1099_mgen_0_000476 crossref_primary_10_1099_mgen_0_000475 crossref_primary_10_1093_jac_dkac208 crossref_primary_10_1099_ijsem_0_005348 crossref_primary_10_1128_genomeA_00584_16 crossref_primary_10_3390_microorganisms8010137 crossref_primary_10_1016_j_gpb_2020_12_002 crossref_primary_10_7554_eLife_65130 crossref_primary_10_1016_j_ijantimicag_2017_02_026 crossref_primary_10_3389_fmicb_2019_02096 crossref_primary_10_3390_ani12111347 crossref_primary_10_3389_fmicb_2021_794134 crossref_primary_10_1038_ng_3281 crossref_primary_10_1099_mgen_0_000484 crossref_primary_10_1089_mdr_2019_0394 crossref_primary_10_1099_mgen_0_000489 crossref_primary_10_1128_aem_00019_22 crossref_primary_10_1128_msystems_00429_23 crossref_primary_10_2147_IDR_S420635 crossref_primary_10_1080_01652176_2023_2240389 crossref_primary_10_1128_AAC_00202_20 crossref_primary_10_1128_ecosalplus_ESP_0013_2020 crossref_primary_10_1128_MRA_01156_18 crossref_primary_10_4142_jvs_24074 crossref_primary_10_1128_spectrum_04886_22 crossref_primary_10_1038_s41598_021_93362_x crossref_primary_10_1186_s12864_017_4216_2 crossref_primary_10_1093_jac_dkz380 crossref_primary_10_3389_fmicb_2023_1179857 crossref_primary_10_1016_j_scitotenv_2024_172466 crossref_primary_10_1099_mgen_0_000425 crossref_primary_10_1128_aem_00465_22 crossref_primary_10_1111_1462_2920_16638 crossref_primary_10_1016_j_cofs_2015_06_002 crossref_primary_10_1099_mgen_0_000428 crossref_primary_10_3390_v14040708 crossref_primary_10_3389_fmicb_2019_02913 crossref_primary_10_1128_AAC_00867_20 crossref_primary_10_1093_bioinformatics_btad283 crossref_primary_10_1186_s13073_022_01150_7 crossref_primary_10_3390_microorganisms12010093 crossref_primary_10_1186_s12866_024_03333_1 crossref_primary_10_1128_AEM_00628_17 crossref_primary_10_1099_mgen_0_000435 crossref_primary_10_1186_s12866_021_02114_4 crossref_primary_10_3389_fmicb_2017_01852 crossref_primary_10_1089_fpd_2021_0005 crossref_primary_10_1016_j_scitotenv_2022_153590 crossref_primary_10_1038_s41598_018_36554_2 crossref_primary_10_1093_jac_dkaa466 crossref_primary_10_1016_j_vetmic_2024_110338 crossref_primary_10_3389_fmicb_2022_801587 crossref_primary_10_1093_jac_dkaa461 crossref_primary_10_3390_ijms25158144 crossref_primary_10_1128_genomeA_01095_17 crossref_primary_10_1093_jacamr_dlae124 crossref_primary_10_1099_acmi_0_000103 crossref_primary_10_1128_genomeA_00272_15 crossref_primary_10_1371_journal_pone_0209623 crossref_primary_10_1016_j_ijid_2024_02_014 crossref_primary_10_1016_j_micpath_2021_105199 crossref_primary_10_3389_fmicb_2022_793541 crossref_primary_10_1128_mSphere_00056_20 crossref_primary_10_3389_fmicb_2020_610296 crossref_primary_10_1016_j_jhin_2019_12_009 crossref_primary_10_1128_mra_00769_24 crossref_primary_10_1016_j_ijantimicag_2020_106108 crossref_primary_10_3389_fmicb_2021_686189 crossref_primary_10_3390_ani10020332 crossref_primary_10_1093_nar_gkx1321 crossref_primary_10_1186_s12879_022_07558_1 crossref_primary_10_1093_jac_dky020 crossref_primary_10_1371_journal_pone_0264439 crossref_primary_10_1016_j_plasmid_2023_102682 crossref_primary_10_1089_fpd_2021_0029 crossref_primary_10_1128_msphere_00408_23 crossref_primary_10_1128_mBio_00853_19 crossref_primary_10_1093_jacamr_dlae183 crossref_primary_10_1080_22221751_2022_2103456 crossref_primary_10_1093_jac_dkz336 crossref_primary_10_1128_spectrum_03393_22 crossref_primary_10_1128_msystems_00105_22 crossref_primary_10_1093_jac_dkaa447 crossref_primary_10_1016_j_scitotenv_2025_178400 crossref_primary_10_3390_foods9081030 crossref_primary_10_3390_bacteria3020007 crossref_primary_10_1016_j_eimce_2024_10_006 crossref_primary_10_3389_fmicb_2019_02030 crossref_primary_10_1089_fpd_2021_0019 crossref_primary_10_1371_journal_pone_0316270 crossref_primary_10_1186_s12917_021_03031_4 crossref_primary_10_3390_antibiotics10020157 crossref_primary_10_1136_bmjopen_2018_021823 crossref_primary_10_1016_j_jiph_2023_10_018 crossref_primary_10_1099_acmi_0_000179 crossref_primary_10_1016_j_plasmid_2023_102684 crossref_primary_10_1016_j_scitotenv_2024_170635 crossref_primary_10_1186_s12866_025_03874_z crossref_primary_10_1016_j_envint_2023_108351 crossref_primary_10_1111_nyas_14223 crossref_primary_10_3390_antibiotics13121134 crossref_primary_10_1128_spectrum_00361_24 crossref_primary_10_1016_j_onehlt_2024_100904 crossref_primary_10_3389_fmicb_2023_1091391 crossref_primary_10_1016_j_onehlt_2024_100901 crossref_primary_10_1128_mra_00646_24 crossref_primary_10_1186_s12879_016_1527_x crossref_primary_10_1016_j_jhazmat_2020_124591 crossref_primary_10_1089_fpd_2021_0037 crossref_primary_10_1002_gch2_202000014 crossref_primary_10_1099_mgen_0_000401 crossref_primary_10_1099_mgen_0_000400 crossref_primary_10_1080_22221751_2023_2292077 crossref_primary_10_3390_antibiotics13121122 crossref_primary_10_1128_aem_00319_23 crossref_primary_10_3390_pathogens13010090 crossref_primary_10_1016_j_ijheh_2022_114106 crossref_primary_10_1016_j_ijheh_2022_114108 crossref_primary_10_3389_fmicb_2022_884721 crossref_primary_10_1016_j_ebiom_2025_105627 crossref_primary_10_1038_s41598_019_42122_z crossref_primary_10_1371_journal_pntd_0004781 crossref_primary_10_1099_jmm_0_000759 crossref_primary_10_1101_gr_279226_124 crossref_primary_10_1016_j_scitotenv_2019_134201 crossref_primary_10_3390_ijms21239161 crossref_primary_10_1128_msystems_01169_21 crossref_primary_10_3168_jds_2020_19569 crossref_primary_10_1128_mSystems_00759_20 crossref_primary_10_1016_j_ijfoodmicro_2020_108624 crossref_primary_10_1371_journal_pone_0318007 crossref_primary_10_1016_j_nmni_2018_10_004 crossref_primary_10_1016_j_eng_2022_05_006 crossref_primary_10_1093_cid_ciy661 crossref_primary_10_1111_1751_7915_14408 crossref_primary_10_3390_antibiotics13050391 crossref_primary_10_1016_j_gdata_2017_10_001 crossref_primary_10_1128_mSystems_01234_20 crossref_primary_10_1016_j_isci_2024_109072 crossref_primary_10_3390_pathogens10081019 crossref_primary_10_1016_j_ijfoodmicro_2023_110554 crossref_primary_10_3390_pathogens13010063 crossref_primary_10_1128_genomeA_01136_16 crossref_primary_10_1111_nyas_14237 crossref_primary_10_1128_spectrum_02140_21 crossref_primary_10_1371_journal_pone_0191873 crossref_primary_10_1016_j_meegid_2024_105598 crossref_primary_10_1128_msystems_00253_22 crossref_primary_10_1186_s13213_021_01642_8 crossref_primary_10_1128_spectrum_00549_23 crossref_primary_10_3389_fmicb_2023_1183018 crossref_primary_10_1038_s41467_020_18668_2 crossref_primary_10_3390_genes11111291 crossref_primary_10_1128_spectrum_00549_22 crossref_primary_10_1128_AAC_00573_20 crossref_primary_10_3390_antibiotics13050380 crossref_primary_10_3389_fmicb_2021_651488 crossref_primary_10_3390_ijms241813883 crossref_primary_10_1128_AAC_01924_18 crossref_primary_10_1016_j_jip_2020_107525 crossref_primary_10_1128_mra_01204_24 crossref_primary_10_1128_spectrum_02476_24 crossref_primary_10_1371_journal_pone_0247058 crossref_primary_10_3390_pathogens11050502 crossref_primary_10_1016_j_meegid_2024_105583 crossref_primary_10_1128_MRA_00552_19 crossref_primary_10_1128_MRA_00122_19 crossref_primary_10_1128_genomeA_00102_18 crossref_primary_10_1128_spectrum_02641_22 crossref_primary_10_1007_s00253_024_13191_6 crossref_primary_10_1016_j_plasmid_2015_03_005 crossref_primary_10_1099_acmi_0_000189 crossref_primary_10_1128_MRA_00704_21 crossref_primary_10_1080_20477724_2017_1314069 crossref_primary_10_1111_apm_12843 crossref_primary_10_3390_plants14071019 crossref_primary_10_1371_journal_pone_0235066 crossref_primary_10_1128_IAI_00619_20 crossref_primary_10_1371_journal_pone_0283583 crossref_primary_10_1128_aac_00738_24 crossref_primary_10_1093_ajcn_nqab353 crossref_primary_10_1098_rstb_2021_0245 crossref_primary_10_1128_Spectrum_00332_21 crossref_primary_10_1128_AEM_02874_19 crossref_primary_10_1371_journal_pone_0312732 crossref_primary_10_1371_journal_pone_0249617 crossref_primary_10_1016_j_ijid_2019_02_009 crossref_primary_10_1038_s41467_023_42104_w crossref_primary_10_2807_1560_7917_ES_2015_20_49_30085 crossref_primary_10_3390_antibiotics13111029 crossref_primary_10_1128_spectrum_01706_24 crossref_primary_10_1128_msystems_00733_23 crossref_primary_10_3389_fvets_2024_1325072 crossref_primary_10_1128_mra_01241_21 crossref_primary_10_3390_microorganisms12020312 crossref_primary_10_3390_pathogens11121489 crossref_primary_10_1128_spectrum_02917_22 crossref_primary_10_1016_j_ijfoodmicro_2021_109091 crossref_primary_10_1007_s10482_019_01303_6 crossref_primary_10_1128_MRA_01023_18 crossref_primary_10_3390_genes12070951 crossref_primary_10_1371_journal_pone_0270205 crossref_primary_10_1093_jac_dkx428 crossref_primary_10_1099_jmm_0_000727 crossref_primary_10_1128_spectrum_01386_23 crossref_primary_10_3389_fvets_2024_1466690 crossref_primary_10_1007_s13205_019_1784_7 crossref_primary_10_3390_microorganisms8111755 crossref_primary_10_1016_j_vetmic_2019_01_016 crossref_primary_10_1186_s12896_023_00797_3 crossref_primary_10_3389_fmicb_2020_549254 crossref_primary_10_3389_fmicb_2020_01376 crossref_primary_10_1128_MRA_00831_19 crossref_primary_10_1038_s41467_020_16322_5 crossref_primary_10_3389_fmicb_2019_02767 crossref_primary_10_1038_s41598_023_34242_4 crossref_primary_10_3389_fmicb_2019_02766 crossref_primary_10_1186_s12866_024_03185_9 crossref_primary_10_3389_fmicb_2016_00671 crossref_primary_10_1016_j_ijantimicag_2023_106776 crossref_primary_10_1111_1462_2920_16481 crossref_primary_10_1038_s41467_022_34970_7 crossref_primary_10_3389_fmicb_2021_641415 crossref_primary_10_3390_microorganisms12030575 crossref_primary_10_1007_s12275_022_1597_y crossref_primary_10_1128_AAC_00564_17 crossref_primary_10_1093_dnares_dsae002 crossref_primary_10_1128_genomeA_01077_15 crossref_primary_10_1371_journal_pone_0242195 crossref_primary_10_1016_j_jgar_2017_08_001 crossref_primary_10_1038_s41598_018_20889_x crossref_primary_10_3390_antibiotics11060731 crossref_primary_10_1093_femsle_fnac069 crossref_primary_10_1128_mra_01216_21 crossref_primary_10_1016_j_jiph_2019_06_011 crossref_primary_10_1186_s44280_023_00017_9 crossref_primary_10_1038_s41598_024_57245_1 crossref_primary_10_1038_s41598_024_75130_9 crossref_primary_10_1007_s00284_024_03802_w crossref_primary_10_1128_MRA_00879_18 crossref_primary_10_1128_mSphere_00685_18 crossref_primary_10_1016_j_ijfoodmicro_2021_109043 crossref_primary_10_1089_mdr_2022_0003 crossref_primary_10_1038_s41598_022_19289_z crossref_primary_10_1186_s12864_020_07041_8 crossref_primary_10_1038_s41598_024_59065_9 crossref_primary_10_3389_fmicb_2019_00179 crossref_primary_10_2139_ssrn_3946990 crossref_primary_10_3389_fmicb_2023_1200088 crossref_primary_10_1016_j_heliyon_2024_e26723 crossref_primary_10_1038_s41467_018_05114_7 crossref_primary_10_1128_aem_01809_23 crossref_primary_10_1016_j_jgar_2024_01_007 crossref_primary_10_1134_S102279541902011X crossref_primary_10_1128_spectrum_02585_22 crossref_primary_10_3390_microorganisms8101515 crossref_primary_10_1016_j_bsheal_2024_02_006 crossref_primary_10_1128_MRA_00280_20 crossref_primary_10_2147_IDR_S395920 crossref_primary_10_3389_fmicb_2019_00149 crossref_primary_10_1186_s12859_023_05414_w crossref_primary_10_1007_s10142_018_0596_x crossref_primary_10_3389_fmicb_2024_1406854 crossref_primary_10_1016_j_envpol_2020_115081 crossref_primary_10_3389_fmicb_2019_00157 crossref_primary_10_1016_j_scitotenv_2021_151767 crossref_primary_10_1128_MRA_00741_20 crossref_primary_10_3389_fmicb_2022_979790 crossref_primary_10_1038_s41467_020_18164_7 crossref_primary_10_3389_fmicb_2020_599524 crossref_primary_10_3390_microorganisms8111775 crossref_primary_10_3390_microorganisms12020347 crossref_primary_10_1093_jac_dkac076 crossref_primary_10_1371_journal_pntd_0007620 crossref_primary_10_3389_fmicb_2020_00093 crossref_primary_10_1016_j_cmi_2015_10_025 crossref_primary_10_1016_j_foodres_2020_109643 crossref_primary_10_1016_j_micpath_2018_08_055 crossref_primary_10_3390_microorganisms12040799 crossref_primary_10_3389_fcimb_2022_1048516 crossref_primary_10_1099_mgen_0_000295 crossref_primary_10_1016_j_resmic_2022_103990 crossref_primary_10_1089_mdr_2019_0203 crossref_primary_10_1016_j_scitotenv_2023_165203 crossref_primary_10_1128_genomeA_00213_17 crossref_primary_10_1128_genomeA_00213_18 crossref_primary_10_1128_mbio_03771_21 crossref_primary_10_2217_fmb_2017_0171 crossref_primary_10_1128_MRA_00359_19 crossref_primary_10_3389_fpubh_2019_00172 crossref_primary_10_1128_aem_00205_22 crossref_primary_10_1093_bioinformatics_btx462 crossref_primary_10_1128_AAC_02581_19 crossref_primary_10_1038_s41598_021_81683_w crossref_primary_10_1099_ijsem_0_004977 crossref_primary_10_3389_fmicb_2021_763669 crossref_primary_10_3390_vetsci4040057 crossref_primary_10_3390_microorganisms12030528 crossref_primary_10_1128_mra_00817_23 crossref_primary_10_1186_s40168_020_00861_6 crossref_primary_10_3389_fmicb_2019_02720 crossref_primary_10_1007_s10142_022_00932_x crossref_primary_10_1128_AAC_01880_16 crossref_primary_10_3389_fmicb_2018_00536 crossref_primary_10_1186_s12866_022_02514_0 crossref_primary_10_3389_fmicb_2018_00538 crossref_primary_10_1016_j_jgar_2024_01_005 crossref_primary_10_1128_genomeA_00289_16 crossref_primary_10_1038_s41467_024_51929_y crossref_primary_10_1186_s13756_022_01156_1 crossref_primary_10_1016_j_foodres_2024_114654 crossref_primary_10_1016_j_foodres_2024_114655 crossref_primary_10_3389_fmicb_2024_1426463 crossref_primary_10_1128_mra_01289_23 crossref_primary_10_1038_s41598_022_17835_3 crossref_primary_10_3390_pathogens8040269 crossref_primary_10_3201_eid2808_212542 crossref_primary_10_3389_fmicb_2016_01130 crossref_primary_10_1016_j_watres_2023_120830 crossref_primary_10_1016_j_vetmic_2024_110130 crossref_primary_10_1007_s10096_021_04318_y crossref_primary_10_3389_fmicb_2024_1440777 crossref_primary_10_1128_aem_01590_22 crossref_primary_10_1128_genomeA_01476_17 crossref_primary_10_1128_msystems_00364_22 crossref_primary_10_1002_jeq2_20081 crossref_primary_10_1099_ijsem_0_003671 crossref_primary_10_1128_spectrum_01309_23 crossref_primary_10_1093_jac_dkad365 crossref_primary_10_3389_fmicb_2020_580960 crossref_primary_10_3389_fgene_2018_00312 crossref_primary_10_1128_genomeA_00736_17 crossref_primary_10_3389_fmicb_2023_1334555 crossref_primary_10_3389_fvets_2019_00298 crossref_primary_10_1128_AAC_02556_20 crossref_primary_10_1186_s12941_024_00676_5 crossref_primary_10_1093_jac_dkac029 crossref_primary_10_1038_s41598_017_01082_y crossref_primary_10_1186_s12920_024_01979_4 crossref_primary_10_1016_j_psj_2024_104706 crossref_primary_10_3389_fmicb_2018_02302 crossref_primary_10_1016_j_onehlt_2024_100880 crossref_primary_10_1016_j_plasmid_2019_102477 crossref_primary_10_1111_lam_13419 crossref_primary_10_3390_microorganisms8101593 crossref_primary_10_1099_mgen_0_000263 crossref_primary_10_1128_JCM_02070_19 crossref_primary_10_1099_mgen_0_000269 crossref_primary_10_1038_s41467_020_18475_9 crossref_primary_10_1186_s12866_023_02985_9 crossref_primary_10_1099_mgen_0_000266 crossref_primary_10_3390_microorganisms10030662 crossref_primary_10_1016_j_jgar_2022_08_016 crossref_primary_10_1007_s10096_018_3231_9 crossref_primary_10_1111_jam_15089 crossref_primary_10_3389_fpubh_2023_1221351 crossref_primary_10_1093_jac_dkac010 crossref_primary_10_31631_2073_3046_2021_20_1_44_50 crossref_primary_10_1371_journal_pone_0201613 crossref_primary_10_3390_antibiotics11060782 crossref_primary_10_1038_s41467_024_44827_w crossref_primary_10_1093_jac_dkz199 crossref_primary_10_1128_AAC_01243_15 crossref_primary_10_3390_antibiotics11060786 crossref_primary_10_1016_j_ijantimicag_2020_105885 crossref_primary_10_3201_eid2406_171648 crossref_primary_10_1080_22221751_2022_2058420 crossref_primary_10_1093_gbe_evx217 crossref_primary_10_1128_JCM_01069_17 crossref_primary_10_1016_j_foodcont_2018_05_048 crossref_primary_10_1155_2024_1949535 crossref_primary_10_1128_AAC_02661_15 crossref_primary_10_1186_s40168_023_01732_6 crossref_primary_10_3390_microorganisms10020411 crossref_primary_10_1093_bioinformatics_btz220 crossref_primary_10_3389_fmicb_2019_02734 crossref_primary_10_3390_antibiotics11060774 crossref_primary_10_1155_2022_2875994 crossref_primary_10_3390_antibiotics11060776 crossref_primary_10_1093_bib_bbaa403 crossref_primary_10_1099_jmm_0_001193 crossref_primary_10_1111_1462_2920_16453 crossref_primary_10_1371_journal_pgen_1010174 crossref_primary_10_3390_ijms24076127 crossref_primary_10_1073_pnas_1501049112 crossref_primary_10_3389_fvets_2021_725737 crossref_primary_10_1099_mgen_0_000331 crossref_primary_10_1016_S1473_3099_16_00067_0 crossref_primary_10_3389_fvets_2021_737720 crossref_primary_10_1128_MRA_00218_19 crossref_primary_10_3168_jds_2022_22158 crossref_primary_10_1155_2024_3526395 crossref_primary_10_1111_vde_13154 crossref_primary_10_1038_s41467_020_19714_9 crossref_primary_10_1128_IAI_00412_19 crossref_primary_10_1111_jam_15058 crossref_primary_10_3389_fmicb_2018_01010 crossref_primary_10_1128_MRA_00356_23 crossref_primary_10_1016_j_micpath_2021_105256 crossref_primary_10_1099_mgen_0_000349 crossref_primary_10_1016_j_genrep_2017_12_007 crossref_primary_10_1128_MRA_00047_19 crossref_primary_10_3389_fmicb_2020_614793 crossref_primary_10_1186_s12866_024_03389_z crossref_primary_10_1016_j_mib_2017_05_005 crossref_primary_10_3390_microorganisms11020347 crossref_primary_10_3390_antibiotics13050455 crossref_primary_10_3201_eid2911_221746 crossref_primary_10_2754_avb202291040383 crossref_primary_10_3390_microorganisms8121905 crossref_primary_10_1080_19490976_2021_1939599 crossref_primary_10_1093_jac_dkz295 crossref_primary_10_1016_j_diagmicrobio_2021_115538 crossref_primary_10_3390_microorganisms8121909 crossref_primary_10_1038_s41598_019_55008_x crossref_primary_10_1093_jac_dkaa395 crossref_primary_10_1038_s41564_019_0645_9 crossref_primary_10_3389_fmicb_2020_571958 crossref_primary_10_1038_s41467_019_13995_5 crossref_primary_10_1093_jac_dkaa390 crossref_primary_10_3389_fmicb_2024_1467847 crossref_primary_10_1099_mgen_0_000353 crossref_primary_10_1016_j_ijfoodmicro_2022_109821 crossref_primary_10_1128_mSphere_00333_18 crossref_primary_10_1371_journal_pone_0150413 crossref_primary_10_3390_microorganisms7110482 crossref_primary_10_3390_fermentation10010016 crossref_primary_10_3389_fmicb_2022_845045 crossref_primary_10_3389_fmicb_2017_01922 crossref_primary_10_1186_s13756_024_01502_5 crossref_primary_10_1128_MRA_01190_20 crossref_primary_10_3390_genes14112044 crossref_primary_10_1099_mgen_0_000365 crossref_primary_10_1186_s13567_015_0291_z crossref_primary_10_1099_mgen_0_000371 crossref_primary_10_3389_fmicb_2017_01914 crossref_primary_10_1093_jac_dkaa372 crossref_primary_10_3389_fmicb_2017_01913 crossref_primary_10_3390_microorganisms12040817 crossref_primary_10_1128_genomeA_01678_15 crossref_primary_10_1016_j_jiph_2023_05_029 crossref_primary_10_1016_j_meegid_2022_105234 crossref_primary_10_1080_14737159_2017_1289087 crossref_primary_10_1038_s41467_018_03205_z crossref_primary_10_1089_mdr_2019_0249 crossref_primary_10_1016_j_foodcont_2021_108247 crossref_primary_10_1016_j_meegid_2019_04_026 crossref_primary_10_1099_acmi_0_000248 crossref_primary_10_3934_agrfood_2020_2_288 crossref_primary_10_1128_mra_01018_22 crossref_primary_10_1038_s41598_024_57423_1 crossref_primary_10_1128_spectrum_01199_23 crossref_primary_10_1007_s12602_024_10346_9 crossref_primary_10_1128_JCM_00573_19 crossref_primary_10_1016_j_fct_2014_06_024 crossref_primary_10_1128_MRA_00437_21 crossref_primary_10_3389_fmicb_2023_1254781 crossref_primary_10_1111_jfs_12995 crossref_primary_10_3390_plants14020209 crossref_primary_10_1016_j_jfp_2024_100374 crossref_primary_10_1186_s12920_019_0576_6 crossref_primary_10_3389_fcimb_2023_1116172 crossref_primary_10_3390_foods13060871 crossref_primary_10_1016_j_gene_2022_146743 crossref_primary_10_1016_j_jhazmat_2024_135707 crossref_primary_10_3390_microorganisms11010103 crossref_primary_10_1016_j_vetmic_2024_110220 crossref_primary_10_3389_fmicb_2022_886428 crossref_primary_10_1128_msphere_00024_23 crossref_primary_10_1111_nyas_14302 crossref_primary_10_1089_mdr_2018_0132 crossref_primary_10_1128_MRA_00713_23 crossref_primary_10_1099_mgen_0_000312 crossref_primary_10_1128_genomeA_00111_16 crossref_primary_10_1128_spectrum_02479_22 crossref_primary_10_3389_fmicb_2023_1244533 crossref_primary_10_3389_fmicb_2023_1153366 crossref_primary_10_1371_journal_pone_0116516 crossref_primary_10_1016_j_cell_2024_01_039 crossref_primary_10_1016_j_idc_2016_02_002 crossref_primary_10_1016_j_jgar_2020_03_018 crossref_primary_10_1016_j_jgar_2024_05_008 crossref_primary_10_3390_microorganisms7090326 crossref_primary_10_1007_s00284_023_03354_5 crossref_primary_10_1093_jac_dkaa339 crossref_primary_10_1128_AEM_02177_20 crossref_primary_10_1099_mgen_0_000323 crossref_primary_10_1146_annurev_food_041715_033259 crossref_primary_10_1289_EHP7729 crossref_primary_10_1099_mgen_0_000321 crossref_primary_10_1007_s10096_024_04765_3 crossref_primary_10_1016_j_micpath_2024_107114 crossref_primary_10_1186_s12866_024_03212_9 crossref_primary_10_3390_antibiotics11111484 crossref_primary_10_3389_fmed_2023_1206756 crossref_primary_10_4269_ajtmh_22_0071 crossref_primary_10_1371_journal_pone_0122369 crossref_primary_10_1128_msystems_01018_24 crossref_primary_10_1126_sciadv_aax3173 crossref_primary_10_1093_jac_dkw191 crossref_primary_10_1111_tbed_13771 crossref_primary_10_1186_s13073_014_0090_6 crossref_primary_10_7554_eLife_67852 crossref_primary_10_3389_fmicb_2022_920319 crossref_primary_10_3390_pathogens11121406 crossref_primary_10_7717_peerj_14895 crossref_primary_10_1093_jacamr_dlae050 crossref_primary_10_1016_j_ijfoodmicro_2015_05_024 crossref_primary_10_1128_aem_00257_23 crossref_primary_10_1016_j_jgar_2024_09_008 crossref_primary_10_1038_s41598_021_89255_8 crossref_primary_10_1128_spectrum_04317_22 crossref_primary_10_1038_s41598_022_08200_5 crossref_primary_10_1093_jac_dkaa311 crossref_primary_10_1007_s00438_025_02230_0 crossref_primary_10_1016_j_dib_2022_108446 crossref_primary_10_3390_microorganisms8121986 crossref_primary_10_1128_spectrum_02698_21 crossref_primary_10_1021_acs_est_9b05919 crossref_primary_10_1016_j_meegid_2021_104924 crossref_primary_10_1186_s12941_023_00607_w crossref_primary_10_1007_s00284_024_03895_3 crossref_primary_10_1080_03079457_2025_2458601 crossref_primary_10_3390_antibiotics11070940 crossref_primary_10_1038_s41467_022_28750_6 crossref_primary_10_3389_fmicb_2022_867278 crossref_primary_10_2807_1560_7917_ES_2022_27_49_2200343 crossref_primary_10_1128_MRA_01376_20 crossref_primary_10_1371_journal_pone_0203323 crossref_primary_10_1016_j_meegid_2019_04_021 crossref_primary_10_1128_msphere_00730_21 crossref_primary_10_3390_pathogens10091178 crossref_primary_10_1111_eea_12763 crossref_primary_10_1016_j_isci_2024_111471 crossref_primary_10_1371_journal_pntd_0005928 crossref_primary_10_1038_s41598_024_62028_9 crossref_primary_10_15212_ZOONOSES_2024_0060 crossref_primary_10_1371_journal_pone_0203338 crossref_primary_10_3389_fmicb_2023_1304678 crossref_primary_10_3390_microorganisms11010122 crossref_primary_10_1007_s15010_024_02334_6 crossref_primary_10_1186_s12934_024_02296_2 crossref_primary_10_1128_microbiolspec_GPP3_0030_2018 crossref_primary_10_1128_mBio_01596_17 crossref_primary_10_1016_j_chom_2022_04_008 crossref_primary_10_1371_journal_pone_0257168 crossref_primary_10_1128_AAC_02385_19 crossref_primary_10_3390_antibiotics11070925 crossref_primary_10_1371_journal_pone_0189438 crossref_primary_10_1016_j_ygeno_2019_07_003 crossref_primary_10_26633_RPSP_2020_104 crossref_primary_10_1016_j_meegid_2021_104934 crossref_primary_10_1093_jac_dkx466 crossref_primary_10_1128_msphere_00170_23 crossref_primary_10_1007_s42770_022_00884_1 crossref_primary_10_1016_j_envint_2019_03_056 crossref_primary_10_1089_mdr_2016_0216 crossref_primary_10_1016_j_onehlt_2021_100354 crossref_primary_10_3390_antibiotics10101268 crossref_primary_10_1016_j_fbio_2024_105219 crossref_primary_10_1016_j_jhin_2023_06_028 crossref_primary_10_1099_jmm_0_001988 crossref_primary_10_1093_jac_dkx456 crossref_primary_10_1186_s12864_020_06863_w crossref_primary_10_3201_eid3004_231031 crossref_primary_10_1186_s13073_021_00936_5 crossref_primary_10_1038_s41467_023_36252_2 crossref_primary_10_1016_j_ram_2019_06_003 crossref_primary_10_1093_gigascience_giaa002 crossref_primary_10_1128_MRA_00506_21 crossref_primary_10_1093_jacamr_dlae073 crossref_primary_10_1128_genomeA_00334_16 crossref_primary_10_3390_microorganisms10040800 crossref_primary_10_1017_gmb_2020_4 crossref_primary_10_1128_aem_01979_21 crossref_primary_10_1128_MRA_01177_18 crossref_primary_10_1371_journal_pntd_0005964 crossref_primary_10_1099_jmm_0_001990 crossref_primary_10_3389_fmicb_2023_1154620 crossref_primary_10_1038_s41598_024_70149_4 crossref_primary_10_3390_microorganisms10122396 crossref_primary_10_1016_j_micinf_2021_104842 crossref_primary_10_3389_fsufs_2019_00018 crossref_primary_10_1016_j_idairyj_2023_105674 crossref_primary_10_1128_aem_01167_22 crossref_primary_10_1016_j_meegid_2021_104989 crossref_primary_10_2903_sp_efsa_2018_EN_1498 crossref_primary_10_3389_fmicb_2016_01862 crossref_primary_10_1016_j_heliyon_2025_e42103 crossref_primary_10_3390_ijms23042137 crossref_primary_10_1038_s41598_020_60659_2 crossref_primary_10_1016_j_jhazmat_2025_137415 crossref_primary_10_1038_s41598_020_76877_7 crossref_primary_10_1186_s12864_022_08711_5 crossref_primary_10_3390_antibiotics11101283 crossref_primary_10_1038_s44259_024_00027_6 crossref_primary_10_1016_j_ijfoodmicro_2019_108388 crossref_primary_10_3390_cimb45030143 crossref_primary_10_1111_jam_14749 crossref_primary_10_1038_s43016_022_00470_6 crossref_primary_10_1128_mra_00763_24 crossref_primary_10_3389_fmicb_2020_574301 crossref_primary_10_1016_j_ijfoodmicro_2020_108831 crossref_primary_10_3390_antibiotics10121495 crossref_primary_10_3389_fmicb_2017_02587 crossref_primary_10_1038_s41598_020_71344_9 crossref_primary_10_1128_AEM_01842_20 crossref_primary_10_1128_mra_00787_22 crossref_primary_10_1128_MRA_00406_21 crossref_primary_10_3389_fmicb_2024_1404996 crossref_primary_10_1128_MRA_00168_19 crossref_primary_10_1080_01652176_2025_2474220 crossref_primary_10_3390_diagnostics13061050 crossref_primary_10_1371_journal_pone_0226828 crossref_primary_10_1128_mra_00018_24 crossref_primary_10_2147_IDR_S244874 crossref_primary_10_1128_MRA_00569_21 crossref_primary_10_3389_fcimb_2022_869314 crossref_primary_10_1016_j_nmni_2017_01_012 crossref_primary_10_1099_ijsem_0_003706 crossref_primary_10_1007_s11262_022_01954_0 crossref_primary_10_1128_MRA_00156_20 crossref_primary_10_1016_j_jgar_2022_03_023 crossref_primary_10_1128_spectrum_00117_24 crossref_primary_10_1093_jac_dkaf028 crossref_primary_10_1016_j_plasmid_2017_01_005 crossref_primary_10_1128_spectrum_02048_24 crossref_primary_10_1111_lam_12859 crossref_primary_10_3389_fmed_2024_1413561 crossref_primary_10_1128_MRA_00119_21 crossref_primary_10_1016_j_nmni_2017_10_005 crossref_primary_10_1186_s12864_024_10945_4 crossref_primary_10_3390_antibiotics9090588 crossref_primary_10_1016_j_jgar_2021_08_002 crossref_primary_10_3390_antibiotics11070884 crossref_primary_10_3390_antibiotics11070883 crossref_primary_10_3390_foods11050703 crossref_primary_10_1128_mSphere_00627_18 crossref_primary_10_1016_j_gene_2020_145386 crossref_primary_10_1128_MRA_00054_21 crossref_primary_10_1128_MRA_00582_19 crossref_primary_10_1128_AAC_02146_20 crossref_primary_10_1016_j_chom_2024_04_016 crossref_primary_10_3390_antibiotics9090590 crossref_primary_10_1089_mdr_2017_0079 crossref_primary_10_1128_MRA_00508_21 crossref_primary_10_1128_MRA_00521_21 crossref_primary_10_1128_MRA_00647_19 crossref_primary_10_3390_microorganisms13010089 crossref_primary_10_1128_MRA_00328_21 crossref_primary_10_3390_antibiotics13080762 crossref_primary_10_3390_pathogens12020284 crossref_primary_10_1080_22221751_2021_1924865 crossref_primary_10_1371_journal_pone_0157718 crossref_primary_10_1186_s12879_018_2987_y crossref_primary_10_1128_AAC_01856_16 crossref_primary_10_3201_eid2606_191121 crossref_primary_10_1371_journal_pone_0246482 crossref_primary_10_3390_ijms23158755 crossref_primary_10_1128_AAC_00404_18 crossref_primary_10_1128_MRA_00107_19 crossref_primary_10_1016_j_jgar_2022_12_009 crossref_primary_10_1094_MPMI_35_4 crossref_primary_10_3390_antibiotics13080737 crossref_primary_10_1016_j_ijfoodmicro_2019_108361 crossref_primary_10_1128_spectrum_03292_23 crossref_primary_10_1007_s40121_023_00791_4 crossref_primary_10_1016_j_idairyj_2023_105605 crossref_primary_10_1007_s00284_023_03393_y crossref_primary_10_1128_MRA_00730_23 crossref_primary_10_1007_s42770_023_01244_3 crossref_primary_10_1016_j_isci_2022_105644 crossref_primary_10_1016_j_jprot_2022_104714 crossref_primary_10_3389_fmicb_2019_01375 crossref_primary_10_1016_j_scitotenv_2024_170815 crossref_primary_10_1128_AEM_01662_20 crossref_primary_10_1186_s12864_024_11182_5 crossref_primary_10_3390_antibiotics13070592 crossref_primary_10_1128_mra_00955_21 crossref_primary_10_1128_mSphere_00537_18 crossref_primary_10_4315_JFP_20_041 crossref_primary_10_1128_AEM_01096_17 crossref_primary_10_1186_s13756_019_0598_z crossref_primary_10_3389_fmicb_2017_02510 crossref_primary_10_3389_fcimb_2024_1407246 crossref_primary_10_1128_mra_00194_22 crossref_primary_10_1016_j_jiph_2024_102588 crossref_primary_10_1099_mgen_0_000191 crossref_primary_10_1099_mgen_0_000190 crossref_primary_10_1128_mra_00079_23 crossref_primary_10_1128_aem_01388_24 crossref_primary_10_1093_femsmc_xtae014 crossref_primary_10_1128_spectrum_02646_21 crossref_primary_10_3389_fmicb_2018_02853 crossref_primary_10_1016_j_ygeno_2023_110742 crossref_primary_10_3389_fmicb_2020_01893 crossref_primary_10_3389_fmicb_2020_586368 crossref_primary_10_1128_AAC_00731_16 crossref_primary_10_3390_antibiotics10091118 crossref_primary_10_3390_pathogens12020221 crossref_primary_10_1016_j_cmi_2016_11_012 crossref_primary_10_1016_j_jgar_2025_03_009 crossref_primary_10_3390_antibiotics10050568 crossref_primary_10_3390_antibiotics10050563 crossref_primary_10_1128_jcm_00046_23 crossref_primary_10_3390_microorganisms9051057 crossref_primary_10_1038_s41564_024_01610_3 crossref_primary_10_1016_j_ram_2022_11_002 crossref_primary_10_1038_s41467_023_38061_z crossref_primary_10_3389_fcimb_2023_1237725 crossref_primary_10_1016_j_jgar_2025_03_003 crossref_primary_10_3389_fmicb_2022_834793 crossref_primary_10_3390_antibiotics13010014 crossref_primary_10_1016_j_jhin_2024_02_028 crossref_primary_10_1128_genomeA_01151_17 crossref_primary_10_1128_MRA_00091_20 crossref_primary_10_1093_ismejo_wraf019 crossref_primary_10_1016_j_crmicr_2022_100106 crossref_primary_10_3389_fmicb_2021_728356 crossref_primary_10_1038_s41467_019_11571_5 crossref_primary_10_1016_j_meegid_2023_105519 crossref_primary_10_1016_j_jhazmat_2024_136641 crossref_primary_10_1093_femsle_fnab086 crossref_primary_10_1099_mgen_0_000131 crossref_primary_10_1371_journal_pntd_0010306 crossref_primary_10_1128_spectrum_00996_24 crossref_primary_10_1128_mSphere_00550_21 crossref_primary_10_1128_AEM_01985_19 crossref_primary_10_1186_s12864_016_2740_0 crossref_primary_10_3389_fvets_2023_1055432 crossref_primary_10_1128_mBio_02359_20 crossref_primary_10_1016_j_jgar_2019_11_013 crossref_primary_10_1007_s00203_021_02203_y crossref_primary_10_3389_fbioe_2020_00828 crossref_primary_10_1038_s41598_022_13197_y crossref_primary_10_1099_mgen_0_000149 crossref_primary_10_3390_microbiolres12010009 crossref_primary_10_3390_microorganisms11102548 crossref_primary_10_1099_mgen_0_000143 crossref_primary_10_1038_s43705_022_00179_4 crossref_primary_10_4315_JFP_21_273 crossref_primary_10_1016_j_ijfoodmicro_2022_109835 crossref_primary_10_3389_fmicb_2022_982220 crossref_primary_10_3390_antibiotics10091121 crossref_primary_10_1093_jac_dkz093 crossref_primary_10_1099_ijsem_0_005510 crossref_primary_10_1128_spectrum_02564_23 crossref_primary_10_1111_mmi_14697 crossref_primary_10_1111_1462_2920_16352 crossref_primary_10_1093_jac_dkz090 crossref_primary_10_3390_microorganisms11102535 crossref_primary_10_1016_j_jgar_2020_11_008 crossref_primary_10_3389_fmicb_2018_00214 crossref_primary_10_2217_fmb_2020_0111 crossref_primary_10_2147_IDR_S398914 crossref_primary_10_1016_j_jiph_2021_10_020 crossref_primary_10_3390_applmicrobiol2040071 crossref_primary_10_1186_s40168_021_01132_8 crossref_primary_10_1007_s00284_020_01905_8 crossref_primary_10_1016_j_vetmic_2015_01_004 crossref_primary_10_1111_zph_12318 crossref_primary_10_3389_fmicb_2018_00220 crossref_primary_10_3389_fmicb_2021_795127 crossref_primary_10_1089_mdr_2023_0197 crossref_primary_10_1093_jac_dkaa181 crossref_primary_10_1371_journal_pone_0269959 crossref_primary_10_1016_j_envpol_2024_124241 crossref_primary_10_1016_j_hazadv_2023_100364 crossref_primary_10_3390_microorganisms10122364 crossref_primary_10_1089_mdr_2020_0339 crossref_primary_10_1128_mBio_00105_18 crossref_primary_10_1128_mra_00931_21 crossref_primary_10_1016_S1473_3099_16_00014_1 crossref_primary_10_3390_microorganisms8030339 crossref_primary_10_1016_j_crmicr_2022_100144 crossref_primary_10_1128_microbiolspec_PLAS_0031_2014 crossref_primary_10_1016_j_jgar_2020_11_002 crossref_primary_10_1038_s41467_022_30717_6 crossref_primary_10_1016_j_cmi_2019_02_005 crossref_primary_10_3390_microorganisms12122461 crossref_primary_10_1016_j_fm_2022_104039 crossref_primary_10_1016_j_jgar_2023_09_013 crossref_primary_10_1128_mBio_01030_15 crossref_primary_10_1128_AAC_00076_18 crossref_primary_10_1128_AAC_00076_17 crossref_primary_10_3138_jammi_2021_0018 crossref_primary_10_1128_AAC_00133_19 crossref_primary_10_1007_s11756_021_01006_2 crossref_primary_10_1016_j_jgar_2023_09_018 crossref_primary_10_1128_genomeA_01061_17 crossref_primary_10_1292_jvms_21_0085 crossref_primary_10_1099_mgen_0_000211 crossref_primary_10_3390_antibiotics10091063 crossref_primary_10_1016_j_heliyon_2024_e29642 crossref_primary_10_1099_ijsem_0_004231 crossref_primary_10_3389_fcimb_2022_875116 crossref_primary_10_3389_fmicb_2017_00737 crossref_primary_10_1093_jac_dkaa284 crossref_primary_10_1016_j_mgene_2021_100894 crossref_primary_10_1099_jmm_0_001486 crossref_primary_10_1007_s10096_024_05016_1 crossref_primary_10_1128_MRA_01338_18 crossref_primary_10_1007_s00018_020_03717_2 crossref_primary_10_1128_spectrum_00399_24 crossref_primary_10_1038_s42003_024_06451_8 crossref_primary_10_3390_microorganisms8091388 crossref_primary_10_1099_mgen_0_000224 crossref_primary_10_1128_MRA_01270_20 crossref_primary_10_1128_MRA_00104_19 crossref_primary_10_1038_s41598_020_61158_0 crossref_primary_10_1128_mra_01303_24 crossref_primary_10_3389_fmicb_2023_1219008 crossref_primary_10_3390_antibiotics10091050 crossref_primary_10_3390_ijms24021519 crossref_primary_10_1016_j_micpath_2021_105373 crossref_primary_10_1371_journal_pone_0176938 crossref_primary_10_3390_microorganisms8081104 crossref_primary_10_1089_mdr_2018_0204 crossref_primary_10_3390_ani10112043 crossref_primary_10_3390_microorganisms11071827 crossref_primary_10_1099_mic_0_001525 crossref_primary_10_3390_biology11111681 crossref_primary_10_1111_mec_15455 crossref_primary_10_1099_mgen_0_000233 crossref_primary_10_1089_mdr_2024_0072 crossref_primary_10_1099_jmm_0_000170 crossref_primary_10_1111_jam_15199 crossref_primary_10_1089_mdr_2018_0211 crossref_primary_10_1016_j_jgar_2023_09_003 crossref_primary_10_4315_JFP_21_371 crossref_primary_10_1128_AAC_02040_18 crossref_primary_10_1128_aem_02522_21 crossref_primary_10_1186_s40168_021_01068_z crossref_primary_10_1099_mgen_0_000244 crossref_primary_10_1128_MRA_01269_19 crossref_primary_10_1371_journal_pgen_1010773 crossref_primary_10_1016_j_resmic_2021_103879 crossref_primary_10_1089_mdr_2020_0263 crossref_primary_10_1128_AEM_02980_20 crossref_primary_10_1128_mSphere_00553_17 crossref_primary_10_3389_fmicb_2020_01954 crossref_primary_10_3389_fmicb_2020_00619 crossref_primary_10_3389_fmicb_2022_918561 crossref_primary_10_3389_fmicb_2018_02026 crossref_primary_10_1038_s41598_024_65178_y crossref_primary_10_1128_msphere_00215_20 crossref_primary_10_1089_mdr_2023_0132 crossref_primary_10_3390_microorganisms8020153 crossref_primary_10_1128_mra_00275_23 crossref_primary_10_3389_fcimb_2022_860163 crossref_primary_10_3201_eid2612_201221 crossref_primary_10_3390_microorganisms12112166 crossref_primary_10_3389_fmicb_2021_645411 crossref_primary_10_3389_fmicb_2025_1527546 crossref_primary_10_1111_tbed_13222 crossref_primary_10_1099_acmi_0_000371 crossref_primary_10_1128_genomeA_01085_16 crossref_primary_10_1186_s12917_019_1864_2 crossref_primary_10_1038_s41598_024_67388_w crossref_primary_10_1128_genomeA_00250_17 crossref_primary_10_1016_j_jinf_2023_06_015 crossref_primary_10_1111_mmi_14614 crossref_primary_10_1186_s12864_024_10620_8 crossref_primary_10_1016_j_jfp_2023_100195 crossref_primary_10_1038_s41598_023_32724_z crossref_primary_10_1038_s41564_025_01958_0 crossref_primary_10_3390_antibiotics14020128 crossref_primary_10_1016_j_fm_2019_01_021 crossref_primary_10_1186_s13073_020_00814_6 crossref_primary_10_3390_microorganisms9091985 crossref_primary_10_1016_j_ijantimicag_2024_107154 crossref_primary_10_1128_msystems_01012_24 crossref_primary_10_1093_jac_dkz118 crossref_primary_10_1128_AAC_00764_18 crossref_primary_10_3390_microorganisms11020230 crossref_primary_10_1186_s13567_023_01176_8 crossref_primary_10_3390_microorganisms10122416 crossref_primary_10_3390_pathogens12030502 crossref_primary_10_1099_mgen_0_000206 crossref_primary_10_1371_journal_pntd_0008036 crossref_primary_10_3389_fmicb_2020_01985 crossref_primary_10_1128_MRA_00896_20 crossref_primary_10_2147_IDR_S246697 crossref_primary_10_1093_nargab_lqad066 crossref_primary_10_1099_mgen_0_000203 crossref_primary_10_3389_fmicb_2021_637813 crossref_primary_10_1093_jac_dkz106 crossref_primary_10_1016_j_dib_2022_108549 crossref_primary_10_1093_jac_dkaa210 crossref_primary_10_3389_fmicb_2023_1169829 crossref_primary_10_1016_j_ecoenv_2023_115191 crossref_primary_10_1186_s13073_019_0706_y crossref_primary_10_3390_genes9080396 crossref_primary_10_1016_j_scitotenv_2024_175705 crossref_primary_10_1016_j_envint_2024_108896 crossref_primary_10_1016_j_jhin_2024_06_005 crossref_primary_10_3390_pathogens11070776 crossref_primary_10_1128_spectrum_03874_23 crossref_primary_10_1139_cjm_2024_0088 crossref_primary_10_1099_jmm_0_001409 crossref_primary_10_1371_journal_pone_0254805 crossref_primary_10_1093_jac_dkaa207 crossref_primary_10_1007_s11756_022_01021_x crossref_primary_10_1016_j_ijmm_2025_151651 crossref_primary_10_1101_gr_241299_118 crossref_primary_10_1128_AEM_01559_19 crossref_primary_10_3389_fmicb_2024_1432240 crossref_primary_10_1016_j_ijantimicag_2024_107163 crossref_primary_10_3390_antibiotics11101329 crossref_primary_10_1016_j_jgar_2018_12_003 crossref_primary_10_3390_microorganisms9061308 crossref_primary_10_1016_j_jgar_2018_12_002 crossref_primary_10_1016_j_jenvman_2022_114569 crossref_primary_10_3389_fmicb_2023_1244026 crossref_primary_10_1016_j_jgar_2021_04_018 crossref_primary_10_1016_j_scitotenv_2024_173907 crossref_primary_10_1128_genomeA_00684_15 crossref_primary_10_3390_ijms23052487 crossref_primary_10_1128_AAC_01403_19 crossref_primary_10_1128_JB_00731_18 crossref_primary_10_7717_peerj_6948 crossref_primary_10_1007_s13205_020_02387_y crossref_primary_10_3390_microorganisms13020266 crossref_primary_10_3390_ijms25010666 crossref_primary_10_1038_s41467_020_16282_w crossref_primary_10_3389_fmicb_2021_628058 crossref_primary_10_1128_AAC_02609_18 crossref_primary_10_1038_s41467_017_02149_0 crossref_primary_10_3389_fmicb_2018_02044 crossref_primary_10_1016_j_scitotenv_2021_152157 crossref_primary_10_1038_s41598_022_24150_4 crossref_primary_10_1016_j_ijantimicag_2025_107484 crossref_primary_10_1128_aem_00664_22 crossref_primary_10_1016_j_ijantimicag_2018_12_002 crossref_primary_10_1128_genomeA_00426_18 crossref_primary_10_3390_microorganisms11020280 crossref_primary_10_1016_j_vetmic_2018_01_012 crossref_primary_10_3389_fmicb_2021_604031 crossref_primary_10_1080_22221751_2019_1653795 crossref_primary_10_1186_s40249_023_01051_w crossref_primary_10_1099_ijsem_0_006022 crossref_primary_10_1128_spectrum_03014_22 crossref_primary_10_1016_j_dib_2018_10_005 crossref_primary_10_3389_fmicb_2021_711577 crossref_primary_10_1128_mra_00796_22 crossref_primary_10_1016_j_ijantimicag_2025_107490 crossref_primary_10_1099_jmm_0_000996 crossref_primary_10_1128_genomeA_00438_16 crossref_primary_10_1590_0074_02760230081 crossref_primary_10_1080_22221751_2024_2339942 crossref_primary_10_1016_j_micres_2017_07_006 crossref_primary_10_1038_s41598_018_28879_9 crossref_primary_10_1186_s42522_020_0010_1 crossref_primary_10_3390_genes16030254 crossref_primary_10_1128_mra_01062_23 crossref_primary_10_3389_fmicb_2023_1284929 crossref_primary_10_1128_mra_01062_21 crossref_primary_10_1186_s12866_024_03720_8 crossref_primary_10_3389_fmicb_2022_868025 crossref_primary_10_1038_s41598_018_26073_5 crossref_primary_10_3389_fmicb_2021_547020 crossref_primary_10_1371_journal_ppat_1012679 crossref_primary_10_1007_s10096_018_3324_5 crossref_primary_10_1038_s41598_021_94213_5 crossref_primary_10_1038_s41598_023_37621_z crossref_primary_10_1128_spectrum_03395_22 crossref_primary_10_1155_2024_6239250 crossref_primary_10_1128_mbio_02428_24 crossref_primary_10_1016_j_csbj_2023_08_031 crossref_primary_10_1093_nar_gkaa821 crossref_primary_10_1016_j_scitotenv_2019_01_179 crossref_primary_10_1128_mBio_02899_18 crossref_primary_10_1128_MRA_00925_19 crossref_primary_10_1093_jac_dkw003 crossref_primary_10_1128_spectrum_03002_22 crossref_primary_10_1128_mra_01435_19 crossref_primary_10_1186_s12864_024_10139_y crossref_primary_10_3390_ijms24021547 crossref_primary_10_1038_s41598_022_17995_2 crossref_primary_10_1007_s42770_024_01480_1 crossref_primary_10_1016_j_ijfoodmicro_2023_110341 crossref_primary_10_1128_spectrum_02503_21 crossref_primary_10_1128_mSphere_01135_20 crossref_primary_10_1128_msphere_00428_20 crossref_primary_10_1016_j_jiph_2024_05_051 crossref_primary_10_3389_fmicb_2022_853810 crossref_primary_10_21105_joss_05397 crossref_primary_10_1038_s41598_020_66239_8 crossref_primary_10_1080_16512235_2017_1345574 crossref_primary_10_35732_ctlabp_2022_8_1_32 crossref_primary_10_1128_genomeA_00065_16 crossref_primary_10_3390_antibiotics11101357 crossref_primary_10_1128_MRA_00353_20 crossref_primary_10_1186_s13073_024_01342_3 crossref_primary_10_1128_msystems_00137_21 crossref_primary_10_4274_tjps_galenos_2021_29794 crossref_primary_10_1016_j_micres_2025_128049 crossref_primary_10_1038_s41598_019_56064_z crossref_primary_10_1128_MRA_00602_21 crossref_primary_10_3390_microorganisms12061091 crossref_primary_10_1111_1462_2920_16262 crossref_primary_10_1128_spectrum_01352_23 crossref_primary_10_1128_mSphere_00695_21 crossref_primary_10_1016_j_drup_2025_101204 crossref_primary_10_3389_fmicb_2023_1304029 crossref_primary_10_1128_spectrum_00095_23 crossref_primary_10_1016_j_jgar_2021_10_016 crossref_primary_10_3389_fmicb_2019_02557 crossref_primary_10_3390_microorganisms11122939 crossref_primary_10_1016_j_ijfoodmicro_2020_108956 crossref_primary_10_1038_s41598_019_56763_7 crossref_primary_10_1007_s13205_018_1498_2 crossref_primary_10_3390_microorganisms8030435 crossref_primary_10_1093_g3journal_jkaa034 crossref_primary_10_3389_fmicb_2021_663414 crossref_primary_10_1016_j_foodcont_2020_107761 crossref_primary_10_1099_acmi_0_000508_v3 crossref_primary_10_2807_1560_7917_ES_2021_26_26_2100569 crossref_primary_10_1155_2023_6639983 crossref_primary_10_1093_jac_dky506 crossref_primary_10_1128_spectrum_03119_22 crossref_primary_10_1016_j_ebiom_2024_105326 crossref_primary_10_1128_mSphere_00121_16 crossref_primary_10_1128_spectrum_01855_23 crossref_primary_10_1093_bioinformatics_bty987 crossref_primary_10_1016_j_idairyj_2023_105774 crossref_primary_10_3389_fmicb_2016_00430 crossref_primary_10_2147_IDR_S358730 crossref_primary_10_1186_s40168_021_01192_w crossref_primary_10_1038_s41467_022_35717_0 crossref_primary_10_1111_1758_2229_12937 crossref_primary_10_3390_microorganisms8030422 crossref_primary_10_1128_MRA_00349_21 crossref_primary_10_1016_j_crfs_2023_100631 crossref_primary_10_1128_mra_00443_22 crossref_primary_10_1007_s00284_020_02089_x crossref_primary_10_1007_s10096_018_3384_6 crossref_primary_10_3390_microorganisms12091771 crossref_primary_10_1016_j_scitotenv_2023_166351 crossref_primary_10_1099_mgen_0_000922 crossref_primary_10_1177_10915818241247527 crossref_primary_10_1128_AAC_00586_20 crossref_primary_10_3390_pathogens11070802 crossref_primary_10_1099_mgen_0_000923 crossref_primary_10_1016_j_fm_2018_11_005 crossref_primary_10_1016_j_jia_2022_11_006 crossref_primary_10_1089_mdr_2017_0131 crossref_primary_10_1371_journal_pone_0279280 crossref_primary_10_1016_j_foodres_2022_111007 crossref_primary_10_1128_mra_00856_23 crossref_primary_10_1016_j_tim_2020_05_003 crossref_primary_10_1080_22221751_2021_1968318 crossref_primary_10_1016_j_plasmid_2022_102638 crossref_primary_10_3389_fmicb_2020_525479 crossref_primary_10_1093_nsr_nwac269 crossref_primary_10_1128_genomeA_00255_18 crossref_primary_10_3389_fcimb_2022_772829 crossref_primary_10_3389_fmicb_2018_02929 crossref_primary_10_3201_eid2911_230921 crossref_primary_10_1128_aem_00393_22 crossref_primary_10_1093_femsle_fnae062 crossref_primary_10_1128_spectrum_01376_24 crossref_primary_10_3389_fmicb_2022_922689 crossref_primary_10_1016_j_cmi_2020_07_045 crossref_primary_10_1128_spectrum_01364_22 crossref_primary_10_1038_s41538_021_00097_0 crossref_primary_10_1099_jmm_0_000934 crossref_primary_10_3390_microorganisms11061425 crossref_primary_10_3389_fmicb_2019_02568 crossref_primary_10_1016_j_gdata_2016_05_003 crossref_primary_10_3390_microorganisms10091863 crossref_primary_10_3389_fmicb_2021_786146 crossref_primary_10_1038_s41467_023_41152_6 crossref_primary_10_1038_s41564_022_01184_y crossref_primary_10_1038_s41564_024_01844_1 crossref_primary_10_3390_microorganisms9071468 crossref_primary_10_1099_acmi_0_000694_v3 crossref_primary_10_1016_j_plasmid_2022_102650 crossref_primary_10_3389_fmicb_2021_732324 crossref_primary_10_3390_microorganisms11061432 crossref_primary_10_1186_s12864_018_5130_y crossref_primary_10_3390_antibiotics10111322 crossref_primary_10_1016_j_jmii_2021_03_003 crossref_primary_10_1099_ijsem_0_002541 crossref_primary_10_1128_msphere_00487_22 crossref_primary_10_1016_j_envres_2023_116928 crossref_primary_10_1128_mSystems_00244_21 crossref_primary_10_1534_g3_117_1137 crossref_primary_10_1016_j_plasmid_2022_102640 crossref_primary_10_1016_j_vetmic_2024_110362 crossref_primary_10_1016_j_onehlt_2025_100970 crossref_primary_10_1371_journal_pntd_0012801 crossref_primary_10_1016_j_tmaid_2020_101914 crossref_primary_10_1128_MRA_01089_18 crossref_primary_10_1128_mra_01020_24 crossref_primary_10_1016_j_envpol_2017_12_084 crossref_primary_10_1089_mdr_2020_0427 crossref_primary_10_1128_AAC_02140_18 crossref_primary_10_3390_microorganisms11051241 crossref_primary_10_1128_msystems_00329_18 crossref_primary_10_1186_s12879_023_08152_9 crossref_primary_10_3390_ijms22115905 crossref_primary_10_1089_mdr_2023_0054 crossref_primary_10_1016_j_ygeno_2021_08_009 crossref_primary_10_1080_00218839_2021_1936915 crossref_primary_10_3390_microorganisms10061199 crossref_primary_10_1016_j_envpol_2020_115706 crossref_primary_10_3389_fvets_2024_1331916 crossref_primary_10_1128_MRA_00828_19 crossref_primary_10_1094_PHYTO_04_20_0129_FI crossref_primary_10_1016_j_vetmic_2016_04_011 crossref_primary_10_1155_2018_3036143 crossref_primary_10_3389_fmicb_2024_1460143 crossref_primary_10_1128_mra_00893_22 crossref_primary_10_1128_MRA_00033_19 crossref_primary_10_1134_S0026261719030032 crossref_primary_10_1080_22221751_2025_2479048 crossref_primary_10_1128_AEM_02111_18 crossref_primary_10_3389_fmicb_2018_00311 crossref_primary_10_1128_mSphere_00080_20 crossref_primary_10_1128_spectrum_02170_22 crossref_primary_10_3389_fmicb_2020_00688 crossref_primary_10_1128_spectrum_00904_24 crossref_primary_10_7554_eLife_101241_4 crossref_primary_10_1007_s12602_022_09999_1 crossref_primary_10_1128_Spectrum_00025_21 crossref_primary_10_1093_femsec_fiaa172 crossref_primary_10_3390_microorganisms11112749 crossref_primary_10_1007_s12602_024_10286_4 crossref_primary_10_3390_antibiotics10121547 crossref_primary_10_1128_msphere_00025_23 crossref_primary_10_1007_s10482_019_01323_2 crossref_primary_10_3390_antibiotics9110782 crossref_primary_10_1089_mdr_2020_0417 crossref_primary_10_1186_s12866_021_02169_3 crossref_primary_10_1128_AAC_02546_18 crossref_primary_10_1128_spectrum_02481_22 crossref_primary_10_1128_genomeA_00831_17 crossref_primary_10_1128_aac_01720_23 crossref_primary_10_1128_aac_00805_24 crossref_primary_10_3390_microorganisms11051275 crossref_primary_10_1128_mra_00754_23 crossref_primary_10_3168_jds_2016_11076 crossref_primary_10_1016_j_smallrumres_2022_106889 crossref_primary_10_1371_journal_pone_0304599 crossref_primary_10_1016_j_ijheh_2022_114075 crossref_primary_10_1099_mgen_0_001341 crossref_primary_10_1093_jambio_lxad215 crossref_primary_10_1016_j_scitotenv_2023_166336 crossref_primary_10_1128_mSphere_00736_19 crossref_primary_10_4315_0362_028X_JFP_18_093 crossref_primary_10_1371_journal_pone_0268502 crossref_primary_10_3389_fmicb_2023_1124225 crossref_primary_10_1038_s41467_023_43854_3 crossref_primary_10_1080_22221751_2024_2353310 crossref_primary_10_1371_journal_pntd_0012830 crossref_primary_10_1128_mBio_00347_19 crossref_primary_10_1016_j_pathol_2020_12_007 crossref_primary_10_3390_microorganisms10091805 crossref_primary_10_1089_mdr_2019_0417 crossref_primary_10_1016_j_gene_2024_148882 crossref_primary_10_1128_MRA_00524_19 crossref_primary_10_3389_fmicb_2021_656250 crossref_primary_10_1128_AEM_01065_19 crossref_primary_10_1128_JCM_00235_18 crossref_primary_10_1099_ijsem_0_005667 crossref_primary_10_3390_vetsci11080365 crossref_primary_10_1093_jac_dkae428 crossref_primary_10_1128_AAC_01298_16 crossref_primary_10_1016_j_envint_2024_108905 crossref_primary_10_7717_peerj_12935 crossref_primary_10_2807_1560_7917_ES_2020_25_48_2001779 crossref_primary_10_3390_microorganisms11102411 crossref_primary_10_12688_openreseurope_13529_1 crossref_primary_10_3390_microorganisms10122482 crossref_primary_10_3390_microorganisms9091911 crossref_primary_10_3389_fpls_2022_894985 crossref_primary_10_1099_mgen_0_001373 crossref_primary_10_1007_s10482_022_01805_w crossref_primary_10_3389_fmicb_2021_764787 crossref_primary_10_1128_jcm_02245_21 crossref_primary_10_1128_genomeA_01702_15 crossref_primary_10_1128_genomeA_00056_18 crossref_primary_10_3390_nano12091534 crossref_primary_10_1007_s00284_025_04147_8 crossref_primary_10_1093_jacamr_dlac041 crossref_primary_10_3390_antibiotics11111641 crossref_primary_10_3389_fmicb_2022_1067235 crossref_primary_10_1128_genomeA_00056_17 crossref_primary_10_1016_j_jinf_2025_106469 crossref_primary_10_1111_jam_15292 crossref_primary_10_3390_pathogens10111480 crossref_primary_10_1080_21655979_2022_2047543 crossref_primary_10_3389_fmicb_2021_656223 crossref_primary_10_1186_s13099_025_00679_3 crossref_primary_10_1186_s13104_018_3784_9 crossref_primary_10_3390_antibiotics12060976 crossref_primary_10_3390_microorganisms8081232 crossref_primary_10_1128_msphere_00423_24 crossref_primary_10_1093_jac_dkab495 crossref_primary_10_1128_MRA_00597_23 crossref_primary_10_1128_mra_01361_22 crossref_primary_10_3201_eid2412_180272 crossref_primary_10_1128_aac_00180_24 crossref_primary_10_1016_j_resmic_2020_11_001 crossref_primary_10_1016_j_nmni_2016_03_006 crossref_primary_10_3390_microorganisms10071387 crossref_primary_10_3390_antibiotics13100935 crossref_primary_10_1038_s41598_022_21836_7 crossref_primary_10_3389_fmicb_2019_03098 crossref_primary_10_1038_s41598_020_73440_2 crossref_primary_10_1128_spectrum_02522_21 crossref_primary_10_1093_jacamr_dlac038 crossref_primary_10_1128_AAC_00006_18 crossref_primary_10_1016_j_jgar_2018_06_008 crossref_primary_10_1111_1462_2920_15865 crossref_primary_10_1556_030_2021_01460 crossref_primary_10_3389_fcimb_2022_888568 crossref_primary_10_1099_acmi_0_000429 crossref_primary_10_1371_journal_pone_0265445 crossref_primary_10_1099_mgen_0_000110 crossref_primary_10_3390_antibiotics13100950 crossref_primary_10_3390_antibiotics14030244 crossref_primary_10_1093_infdis_jiae596 crossref_primary_10_1128_CMR_00001_16 crossref_primary_10_1093_jac_dkab471 crossref_primary_10_1099_mgen_0_000128 crossref_primary_10_3389_fvets_2025_1552297 crossref_primary_10_1007_s15010_024_02341_7 crossref_primary_10_3389_fmolb_2024_1268647 crossref_primary_10_1186_s12866_019_1632_2 crossref_primary_10_1016_j_ijantimicag_2024_107228 crossref_primary_10_1016_j_psj_2025_104855 crossref_primary_10_1089_mdr_2020_0389 crossref_primary_10_1038_s41598_017_06503_6 crossref_primary_10_1093_jac_dkz032 crossref_primary_10_1038_s41467_024_54459_9 crossref_primary_10_1093_jac_dkab463 crossref_primary_10_1128_AAC_01379_20 crossref_primary_10_1128_spectrum_02615_23 crossref_primary_10_1128_msystems_00519_22 crossref_primary_10_1016_j_ijantimicag_2017_10_011 crossref_primary_10_3389_fmed_2022_931379 crossref_primary_10_3389_fmicb_2020_592223 crossref_primary_10_3390_ijerph19105848 crossref_primary_10_1038_s44259_025_00081_8 crossref_primary_10_3390_microorganisms11051285 crossref_primary_10_4315_JFP_21_431 crossref_primary_10_1038_s41467_024_46684_z crossref_primary_10_1186_s12917_020_02407_2 crossref_primary_10_1038_s41467_019_12823_0 crossref_primary_10_1128_JCM_03125_20 crossref_primary_10_1128_genomeA_01381_17 crossref_primary_10_1186_s12929_023_00960_0 crossref_primary_10_1128_AAC_01448_17 crossref_primary_10_1016_j_ijantimicag_2024_107245 crossref_primary_10_3390_antibiotics14030297 crossref_primary_10_1186_s12866_024_03614_9 crossref_primary_10_1093_cid_ciab784 crossref_primary_10_1099_jmm_0_001348 crossref_primary_10_3390_ijms232214494 crossref_primary_10_1038_s42003_021_02013_4 crossref_primary_10_2147_IDR_S332949 crossref_primary_10_1016_j_ijantimicag_2024_107271 crossref_primary_10_3390_foods11223556 crossref_primary_10_3390_microorganisms11081948 crossref_primary_10_1093_jac_dkaa105 crossref_primary_10_1093_jac_dkaa107 crossref_primary_10_1038_s42003_021_02827_2 crossref_primary_10_1080_14787210_2016_1193005 crossref_primary_10_1093_ofid_ofx115 crossref_primary_10_1016_j_meegid_2014_08_014 crossref_primary_10_1016_j_rvsc_2021_06_007 crossref_primary_10_1016_S2666_5247_20_30061_6 crossref_primary_10_1093_cid_ciab776 crossref_primary_10_1080_22221751_2020_1821582 crossref_primary_10_1093_jacamr_dlac050 crossref_primary_10_3390_antibiotics14030281 crossref_primary_10_3390_microorganisms8071016 crossref_primary_10_1016_j_ijantimicag_2024_107265 crossref_primary_10_1038_s41467_021_23091_2 crossref_primary_10_1177_03009858231179956 crossref_primary_10_3390_genes11060625 crossref_primary_10_1016_j_envpol_2022_119015 crossref_primary_10_1073_pnas_2003407117 crossref_primary_10_2807_1560_7917_ES_2024_29_22_2300666 crossref_primary_10_3390_antibiotics11101439 crossref_primary_10_1186_s13104_015_1687_6 crossref_primary_10_3389_fmicb_2023_1035547 crossref_primary_10_3390_microorganisms9091880 crossref_primary_10_1186_s12879_024_09380_3 crossref_primary_10_3390_antibiotics11101443 crossref_primary_10_1128_MRA_00995_20 crossref_primary_10_1007_s10096_022_04479_4 crossref_primary_10_1099_mic_0_000367 crossref_primary_10_3389_fmicb_2021_617487 crossref_primary_10_3389_fmicb_2021_789280 crossref_primary_10_3390_microorganisms10102034 crossref_primary_10_1016_j_dib_2024_110750 crossref_primary_10_1186_s40104_021_00643_6 crossref_primary_10_3390_microorganisms9081612 crossref_primary_10_3390_pathogens9020089 crossref_primary_10_1186_s12866_019_1454_2 crossref_primary_10_3389_fcimb_2024_1464816 crossref_primary_10_3390_microorganisms9081613 crossref_primary_10_1093_jac_dkab407 crossref_primary_10_3390_pathogens9090771 crossref_primary_10_3389_fmicb_2020_573972 crossref_primary_10_1016_j_dib_2022_108685 crossref_primary_10_3390_md21080444 crossref_primary_10_1016_j_ebiom_2023_104681 crossref_primary_10_1128_spectrum_03777_22 crossref_primary_10_1007_s10482_022_01777_x crossref_primary_10_1007_s15010_023_02061_4 crossref_primary_10_3390_antibiotics10030284 crossref_primary_10_1186_s13568_023_01519_w crossref_primary_10_1016_j_ijfoodmicro_2023_110490 crossref_primary_10_3390_microorganisms10102044 crossref_primary_10_1016_j_vetmic_2020_108617 crossref_primary_10_1093_gbe_evz158 crossref_primary_10_3390_microorganisms10081589 crossref_primary_10_1073_pnas_1922187117 crossref_primary_10_1126_science_aao2136 crossref_primary_10_1016_j_ijfoodmicro_2024_110734 crossref_primary_10_1016_j_prp_2024_155606 crossref_primary_10_1038_s41564_018_0217_4 crossref_primary_10_1016_j_ijregi_2024_100368 crossref_primary_10_1128_AEM_01049_15 crossref_primary_10_1128_msphere_00407_20 crossref_primary_10_3390_microorganisms11061513 crossref_primary_10_1186_s12864_019_6260_6 crossref_primary_10_1556_030_2022_01825 crossref_primary_10_1016_j_plasmid_2019_02_003 crossref_primary_10_1016_j_diagmicrobio_2021_115399 crossref_primary_10_1038_s41467_022_28819_2 crossref_primary_10_1186_s13073_021_00893_z crossref_primary_10_1128_spectrum_04254_23 crossref_primary_10_1016_j_micinf_2024_105462 crossref_primary_10_1099_ijsem_0_006140 crossref_primary_10_3390_microorganisms10081592 crossref_primary_10_1016_j_eng_2020_10_015 crossref_primary_10_1590_0074_02760170019 crossref_primary_10_1128_genomeA_00604_17 crossref_primary_10_1097_IM9_0000000000000077 crossref_primary_10_1099_mgen_0_000935 crossref_primary_10_3390_microorganisms10102063 crossref_primary_10_1099_acmi_0_000828_v3 crossref_primary_10_3390_antibiotics14030230 crossref_primary_10_7717_peerj_16401 crossref_primary_10_1128_spectrum_00770_23 crossref_primary_10_1016_j_jgar_2024_08_008 crossref_primary_10_3390_antibiotics10030258 crossref_primary_10_1038_s41598_022_17996_1 crossref_primary_10_1089_fpd_2023_0008 crossref_primary_10_7554_eLife_53886 crossref_primary_10_1016_j_jmii_2023_10_014 crossref_primary_10_1128_mBio_02481_18 crossref_primary_10_1128_MRA_00386_20 crossref_primary_10_1099_mgen_0_000946 crossref_primary_10_1186_s12879_021_05790_9 crossref_primary_10_3389_fcimb_2022_922976 crossref_primary_10_1038_s41598_019_42672_2 crossref_primary_10_1111_tbed_13980 crossref_primary_10_3389_fvets_2022_816279 crossref_primary_10_1016_j_ijid_2019_05_025 crossref_primary_10_1111_1462_2920_15822 crossref_primary_10_1128_spectrum_02080_23 crossref_primary_10_3389_fmicb_2019_03052 crossref_primary_10_1016_j_ijfoodmicro_2024_110785 crossref_primary_10_1128_AEM_02654_18 crossref_primary_10_1093_jac_dkx216 crossref_primary_10_1016_j_jgar_2018_06_004 crossref_primary_10_1016_j_scitotenv_2022_153632 crossref_primary_10_1016_j_jgar_2018_06_006 crossref_primary_10_1093_molbev_msae206 crossref_primary_10_1128_AAC_00562_20 crossref_primary_10_3390_vetsci11100469 crossref_primary_10_1038_s42003_023_05745_7 crossref_primary_10_1128_mSphere_00891_19 crossref_primary_10_3389_fmicb_2020_629189 crossref_primary_10_3390_ijms23169330 crossref_primary_10_1128_msystems_00158_22 crossref_primary_10_1007_s00284_023_03458_y crossref_primary_10_1128_spectrum_03327_23 crossref_primary_10_1128_spectrum_03128_23 crossref_primary_10_1128_genomeA_00125_18 crossref_primary_10_1371_journal_pone_0296514 crossref_primary_10_1080_22221751_2021_2005453 crossref_primary_10_1016_j_bjid_2022_102706 crossref_primary_10_1016_j_psj_2024_104591 crossref_primary_10_3390_microorganisms9081676 crossref_primary_10_1016_j_meegid_2024_105692 crossref_primary_10_1093_gbe_evz184 crossref_primary_10_1093_jac_dkx200 crossref_primary_10_1038_s41396_019_0446_4 crossref_primary_10_1099_mgen_0_000960 crossref_primary_10_1016_j_envpol_2021_117856 crossref_primary_10_1186_s13073_021_00947_2 crossref_primary_10_1556_030_2021_01400 crossref_primary_10_1016_j_envpol_2019_04_056 crossref_primary_10_1128_genomeA_00218_15 crossref_primary_10_1016_j_vetmic_2019_108423 crossref_primary_10_1007_s12275_019_8421_3 crossref_primary_10_1016_j_eimc_2024_08_014 crossref_primary_10_1007_s10096_022_04512_6 crossref_primary_10_2147_IDR_S322686 crossref_primary_10_1016_j_jgar_2019_12_017 crossref_primary_10_1128_MRA_00740_20 crossref_primary_10_3389_fmicb_2020_00387 crossref_primary_10_3389_fmicb_2017_00182 crossref_primary_10_1016_j_ijantimicag_2016_03_019 crossref_primary_10_1080_22221751_2019_1678367 crossref_primary_10_3389_fmicb_2020_604067 crossref_primary_10_1128_mSystems_00211_19 crossref_primary_10_1016_j_foodres_2021_110198 crossref_primary_10_1016_j_scitotenv_2023_166255 crossref_primary_10_1186_s40793_016_0202_6 crossref_primary_10_1128_aem_01121_22 crossref_primary_10_1128_MRA_01046_18 crossref_primary_10_1101_gr_279355_124 crossref_primary_10_1093_jac_dkv365 crossref_primary_10_3389_fmicb_2024_1357881 crossref_primary_10_1038_s42003_024_07310_2 crossref_primary_10_3389_fmicb_2017_00173 crossref_primary_10_1371_journal_pone_0239924 crossref_primary_10_2147_IDR_S301736 crossref_primary_10_3389_fmicb_2019_01108 crossref_primary_10_1128_AAC_01740_16 crossref_primary_10_1128_spectrum_01489_24 crossref_primary_10_1128_mra_00167_23 crossref_primary_10_1128_AEM_01385_21 crossref_primary_10_1128_msphere_00704_24 crossref_primary_10_3168_jds_2024_25157 crossref_primary_10_1186_s12864_022_08842_9 crossref_primary_10_3389_fmicb_2021_750065 crossref_primary_10_1093_jambio_lxae293 crossref_primary_10_3389_fmicb_2022_1095128 crossref_primary_10_1371_journal_pcbi_1005652 crossref_primary_10_3390_microorganisms12061193 crossref_primary_10_3389_fmicb_2021_592291 crossref_primary_10_1093_bioadv_vbac010 crossref_primary_10_3389_fmicb_2020_515319 crossref_primary_10_4014_jmb_2007_07008 crossref_primary_10_1128_MRA_00088_21 crossref_primary_10_1089_mdr_2017_0257 crossref_primary_10_1093_gigascience_gix132 crossref_primary_10_1371_journal_pbio_3001421 crossref_primary_10_1128_mra_00270_24 crossref_primary_10_1016_j_jgar_2022_11_002 crossref_primary_10_1038_s41598_018_28085_7 crossref_primary_10_1016_j_meegid_2020_104453 crossref_primary_10_1093_nar_gky352 crossref_primary_10_3390_microorganisms12061182 crossref_primary_10_1128_AAC_01601_17 crossref_primary_10_3390_antibiotics9080503 crossref_primary_10_3389_fmicb_2023_1206757 crossref_primary_10_1038_s41467_019_14012_5 crossref_primary_10_1128_CMR_00016_17 crossref_primary_10_12688_f1000research_25540_1 crossref_primary_10_3389_fcimb_2019_00328 crossref_primary_10_1139_gen_2019_0100 crossref_primary_10_1093_jacamr_dlaa109 crossref_primary_10_3390_antibiotics10070838 crossref_primary_10_3389_fmicb_2018_00882 crossref_primary_10_3343_alm_2020_40_1_15 crossref_primary_10_3390_microorganisms12122645 crossref_primary_10_3389_fmicb_2023_1147846 crossref_primary_10_1038_s41598_020_71213_5 crossref_primary_10_1016_j_envint_2024_108606 crossref_primary_10_1016_j_envint_2024_108603 crossref_primary_10_1128_mra_00131_24 crossref_primary_10_1016_j_ijfoodmicro_2024_110828 crossref_primary_10_3389_fmicb_2024_1397068 crossref_primary_10_3390_antibiotics11010102 crossref_primary_10_1016_j_vetmic_2019_108445 crossref_primary_10_1128_spectrum_00942_21 crossref_primary_10_1016_j_gene_2023_147305 crossref_primary_10_1128_AAC_01130_16 crossref_primary_10_3389_fmicb_2020_599882 crossref_primary_10_1128_mbio_03796_21 crossref_primary_10_1128_msystems_00883_23 crossref_primary_10_1128_genomeA_01435_17 crossref_primary_10_1371_journal_pone_0214648 crossref_primary_10_3390_microorganisms9071345 crossref_primary_10_1007_s10123_021_00215_8 crossref_primary_10_3389_fmicb_2021_640408 crossref_primary_10_1128_AAC_00565_15 crossref_primary_10_1016_j_plasmid_2019_03_005 crossref_primary_10_1016_j_jgar_2022_02_016 crossref_primary_10_1089_mdr_2024_0208 crossref_primary_10_1038_s41598_017_12743_3 crossref_primary_10_1128_spectrum_01579_22 crossref_primary_10_1016_j_meegid_2020_104499 crossref_primary_10_1128_aem_00646_22 crossref_primary_10_1128_msystems_00425_21 crossref_primary_10_1128_AAC_01817_18 crossref_primary_10_3389_fmicb_2021_754464 crossref_primary_10_3390_antibiotics9100675 crossref_primary_10_3390_antibiotics12040658 crossref_primary_10_1038_s41522_024_00590_w crossref_primary_10_1111_zph_12586 crossref_primary_10_1016_j_jgar_2020_10_021 crossref_primary_10_3390_antibiotics12050895 crossref_primary_10_1128_AAC_01919_16 crossref_primary_10_1128_AAC_00147_21 crossref_primary_10_1099_mgen_0_001272 crossref_primary_10_1186_s13756_020_00759_w crossref_primary_10_1016_j_fm_2021_103957 crossref_primary_10_1186_s13073_025_01443_7 crossref_primary_10_3390_ani13172687 crossref_primary_10_1016_j_heliyon_2023_e22109 crossref_primary_10_1128_genomeA_00162_16 crossref_primary_10_3390_dairy3040055 crossref_primary_10_1016_j_cmi_2019_10_014 crossref_primary_10_1136_bmjopen_2022_061463 crossref_primary_10_1093_bioinformatics_btw493 crossref_primary_10_1093_jambio_lxae217 crossref_primary_10_1099_mgen_0_001282 crossref_primary_10_1128_spectrum_00115_22 crossref_primary_10_1080_21505594_2021_1924019 crossref_primary_10_1128_genomeA_00850_17 crossref_primary_10_1093_ismeco_ycae126 crossref_primary_10_3390_ijms241713108 crossref_primary_10_1007_s42770_023_01183_z crossref_primary_10_1098_rstb_2020_0464 crossref_primary_10_1186_s13756_019_0508_4 crossref_primary_10_1016_j_scitotenv_2020_137275 crossref_primary_10_1128_genomeA_01550_17 crossref_primary_10_1099_mgen_0_001290 crossref_primary_10_1099_mgen_0_001291 crossref_primary_10_1016_j_hazadv_2025_100648 crossref_primary_10_3390_antibiotics12050883 crossref_primary_10_1038_s41467_024_46147_5 crossref_primary_10_3389_fmicb_2020_00333 crossref_primary_10_1128_aac_01462_24 crossref_primary_10_1038_s41467_024_45176_4 crossref_primary_10_1016_j_gpb_2022_11_006 crossref_primary_10_1099_mgen_0_001299 crossref_primary_10_1128_mra_00765_24 crossref_primary_10_1128_AAC_02557_20 crossref_primary_10_3390_microorganisms9122560 crossref_primary_10_3390_antibiotics12050851 crossref_primary_10_1186_s12864_024_10155_y crossref_primary_10_1016_j_jgar_2019_03_014 crossref_primary_10_1016_j_ijantimicag_2024_107411 crossref_primary_10_1186_s12866_023_02975_x crossref_primary_10_3349_ymj_2023_0490 crossref_primary_10_3389_fmicb_2016_01660 crossref_primary_10_1016_j_fm_2021_103917 crossref_primary_10_1186_s12917_024_04260_z crossref_primary_10_1186_s12879_023_08086_2 crossref_primary_10_3389_fmicb_2020_00352 crossref_primary_10_1093_nar_gky1050 crossref_primary_10_3390_microorganisms12061169 crossref_primary_10_1128_spectrum_05074_22 crossref_primary_10_1016_j_jia_2023_12_038 crossref_primary_10_1111_1462_2920_16111 crossref_primary_10_1128_mra_00089_24 crossref_primary_10_3390_antibiotics10060645 crossref_primary_10_3390_antibiotics12121748 crossref_primary_10_1016_j_jhazmat_2024_134694 crossref_primary_10_1186_s13099_024_00662_4 crossref_primary_10_1007_s42770_024_01269_2 crossref_primary_10_1093_femsle_fnad014 crossref_primary_10_2139_ssrn_4194562 crossref_primary_10_1038_s41598_020_68036_9 crossref_primary_10_3390_microorganisms12071391 crossref_primary_10_1128_MRA_00650_19 crossref_primary_10_1128_MRA_00788_20 crossref_primary_10_1016_j_pathol_2024_04_013 crossref_primary_10_1080_21505594_2021_2007645 crossref_primary_10_1016_j_ygeno_2022_110281 crossref_primary_10_1099_mgen_0_001248 crossref_primary_10_1099_ijsem_0_005779 crossref_primary_10_1016_j_tvjl_2018_12_015 crossref_primary_10_1007_s42770_021_00587_z crossref_primary_10_1371_journal_pone_0224861 crossref_primary_10_1128_MRA_00919_19 crossref_primary_10_1186_s12859_024_05913_4 crossref_primary_10_1093_nar_gky1073 crossref_primary_10_1016_j_ijfoodmicro_2025_111118 crossref_primary_10_1111_zph_12571 crossref_primary_10_1371_journal_pone_0270707 crossref_primary_10_1099_mgen_0_001257 crossref_primary_10_1128_mSphere_00130_19 crossref_primary_10_1016_j_plasmid_2017_02_006 crossref_primary_10_1099_acmi_0_000646_v6 crossref_primary_10_1128_mBio_01056_18 crossref_primary_10_1016_j_ijantimicag_2024_107425 crossref_primary_10_1371_journal_pone_0231146 crossref_primary_10_3390_microorganisms11051112 crossref_primary_10_1016_j_dib_2021_107552 crossref_primary_10_3389_fcimb_2021_532989 crossref_primary_10_1038_s41598_017_06256_2 crossref_primary_10_1016_j_ijheh_2024_114345 crossref_primary_10_1128_spectrum_00356_23 crossref_primary_10_1016_j_ijfoodmicro_2025_111115 crossref_primary_10_3390_microorganisms9122515 crossref_primary_10_1038_s41598_018_33266_5 crossref_primary_10_1038_s41598_018_28169_4 crossref_primary_10_1099_mgen_0_001300 crossref_primary_10_1128_genomeA_01382_17 crossref_primary_10_1099_mgen_0_001303 crossref_primary_10_1128_spectrum_03000_23 crossref_primary_10_1016_j_dib_2021_107586 crossref_primary_10_1093_jac_dkab377 crossref_primary_10_1111_zph_12619 crossref_primary_10_1128_genomeA_01382_16 crossref_primary_10_1128_msphere_00446_24 crossref_primary_10_3389_fmicb_2022_930895 crossref_primary_10_3390_microorganisms12071469 crossref_primary_10_3390_microorganisms8060896 crossref_primary_10_3390_microorganisms8060893 crossref_primary_10_3389_fcimb_2021_765540 crossref_primary_10_1099_mgen_0_001315 crossref_primary_10_1128_aac_01093_22 crossref_primary_10_1099_mgen_0_001318 crossref_primary_10_1371_journal_pone_0267972 crossref_primary_10_1099_mgen_0_001312 crossref_primary_10_1007_s13205_021_03020_2 crossref_primary_10_3389_fmicb_2022_903268 crossref_primary_10_1016_j_eimce_2024_12_004 crossref_primary_10_1186_s12866_021_02225_y crossref_primary_10_1590_0074_02760180392 crossref_primary_10_1128_mbio_03023_23 crossref_primary_10_3389_fmicb_2021_626941 crossref_primary_10_1038_s41467_021_25073_w crossref_primary_10_1128_JCM_03104_14 crossref_primary_10_1016_j_jgar_2024_12_011 crossref_primary_10_1128_spectrum_03012_23 crossref_primary_10_1080_21505594_2024_2349768 crossref_primary_10_3389_fmicb_2020_578020 crossref_primary_10_1038_s41467_024_52800_w crossref_primary_10_1016_j_jgar_2024_12_016 crossref_primary_10_1128_mSphere_00551_19 crossref_primary_10_1093_ofid_ofaa018 crossref_primary_10_3390_ijms24043581 crossref_primary_10_3390_diagnostics11010079 crossref_primary_10_3389_fcimb_2023_1122532 crossref_primary_10_1016_j_dib_2022_108736 crossref_primary_10_1128_msystems_01101_24 crossref_primary_10_1128_msystems_00831_21 crossref_primary_10_1016_j_jgar_2019_07_013 crossref_primary_10_1016_j_jgar_2024_12_008 crossref_primary_10_1093_nar_gkaa198 crossref_primary_10_1128_MRA_00700_20 crossref_primary_10_1017_ice_2019_304 crossref_primary_10_1099_mgen_0_001337 crossref_primary_10_3390_fermentation7020065 crossref_primary_10_1128_microbiolspec_ARBA_0032_2018 crossref_primary_10_1128_aac_00935_23 crossref_primary_10_1371_journal_pone_0230652 crossref_primary_10_3389_fmicb_2021_735364 crossref_primary_10_3201_eid2404_171377 crossref_primary_10_3389_fmicb_2023_1173287 crossref_primary_10_2807_1560_7917_ES_2019_24_41_1800594 crossref_primary_10_1038_s41564_018_0205_8 crossref_primary_10_3389_fsufs_2018_00083 crossref_primary_10_1016_j_meegid_2018_02_023 crossref_primary_10_1099_mgen_0_000892 crossref_primary_10_1099_mgen_0_000896 crossref_primary_10_1099_mgen_0_000893 crossref_primary_10_1093_nar_gkad282 crossref_primary_10_1016_j_ijantimicag_2021_106430 crossref_primary_10_1128_MRA_00641_20 crossref_primary_10_1038_s41598_023_31901_4 crossref_primary_10_1128_microbiolspec_ARBA_0028_2017 crossref_primary_10_1186_s12941_017_0212_2 crossref_primary_10_1186_s13059_019_1785_1 crossref_primary_10_1128_Spectrum_00340_21 crossref_primary_10_1128_genomeA_01369_17 crossref_primary_10_3389_fmicb_2019_00733 crossref_primary_10_54044_RAMI_2023_02_03 crossref_primary_10_1093_femspd_ftad022 crossref_primary_10_1016_j_jgar_2019_07_027 crossref_primary_10_1007_s00203_023_03709_3 crossref_primary_10_1016_j_jgar_2019_07_024 crossref_primary_10_1128_spectrum_02292_24 crossref_primary_10_1016_j_ijfoodmicro_2023_110168 crossref_primary_10_1128_AEM_00903_15 crossref_primary_10_1128_AAC_00995_17 crossref_primary_10_1637_aviandiseases_D_23_00017 crossref_primary_10_1016_j_ijmm_2021_151541 crossref_primary_10_1016_j_diagmicrobio_2022_115765 crossref_primary_10_1016_j_jgar_2021_05_015 crossref_primary_10_1016_j_csbj_2018_12_001 crossref_primary_10_1016_j_jgar_2023_03_008 crossref_primary_10_1128_spectrum_01633_21 crossref_primary_10_1016_j_diagmicrobio_2020_115174 crossref_primary_10_3389_fmicb_2020_01741 crossref_primary_10_3390_cells10123411 crossref_primary_10_1007_s00203_022_02813_0 crossref_primary_10_1128_msystems_00498_20 crossref_primary_10_3389_fcimb_2018_00446 crossref_primary_10_1093_jac_dkab306 crossref_primary_10_1128_AEM_01574_21 crossref_primary_10_1371_journal_pone_0253312 crossref_primary_10_1093_jac_dkx173 crossref_primary_10_1089_mdr_2020_0061 crossref_primary_10_3389_fmicb_2021_635871 crossref_primary_10_1128_mra_01019_24 crossref_primary_10_1128_spectrum_02038_23 crossref_primary_10_1007_s10096_023_04682_x crossref_primary_10_1016_j_micpath_2018_12_033 crossref_primary_10_1089_mdr_2024_0212 crossref_primary_10_1016_j_crmicr_2023_100193 crossref_primary_10_1089_fpd_2023_0161 crossref_primary_10_1089_mdr_2021_0274 crossref_primary_10_1186_s12864_020_07001_2 crossref_primary_10_1016_j_ijantimicag_2021_106478 crossref_primary_10_1128_MRA_00073_21 crossref_primary_10_1128_spectrum_00957_22 crossref_primary_10_1128_AAC_00823_19 crossref_primary_10_1016_j_mimet_2022_106645 crossref_primary_10_1128_mra_00961_24 crossref_primary_10_1371_journal_pntd_0010178 crossref_primary_10_1128_mSystems_00821_20 crossref_primary_10_1089_mdr_2021_0267 crossref_primary_10_1016_j_ijmm_2021_151534 crossref_primary_10_1155_2024_1828830 crossref_primary_10_3390_ijms26052051 crossref_primary_10_1099_mgen_0_000863 crossref_primary_10_3389_fmicb_2021_748611 crossref_primary_10_1016_j_meegid_2020_104513 crossref_primary_10_1093_jac_dkx148 crossref_primary_10_1016_j_ijantimicag_2021_106463 crossref_primary_10_3390_microorganisms8060827 crossref_primary_10_1128_mra_01072_22 crossref_primary_10_1099_mgen_0_000877 crossref_primary_10_1016_j_jgar_2017_06_005 crossref_primary_10_1371_journal_pone_0288840 crossref_primary_10_1016_j_ijmm_2021_151501 crossref_primary_10_1089_mdr_2021_0254 crossref_primary_10_1128_spectrum_00304_24 crossref_primary_10_1128_mra_01060_24 crossref_primary_10_1128_genomeA_00134_16 crossref_primary_10_3389_fmicb_2021_723322 crossref_primary_10_1016_j_ijantimicag_2021_106456 crossref_primary_10_1128_AAC_01204_16 crossref_primary_10_3389_fmicb_2023_1166908 crossref_primary_10_1128_mBio_02060_21 crossref_primary_10_1128_AAC_01204_19 crossref_primary_10_3389_fmicb_2021_675002 crossref_primary_10_1039_D0RA01484B crossref_primary_10_3390_tropicalmed8060294 crossref_primary_10_1002_ccr3_8684 crossref_primary_10_1089_mdr_2020_0098 crossref_primary_10_3389_fmicb_2021_642125 crossref_primary_10_3389_fmicb_2021_700698 crossref_primary_10_1016_j_scitotenv_2024_175078 crossref_primary_10_3389_fvets_2024_1433124 crossref_primary_10_1093_jac_dky451 crossref_primary_10_3390_antibiotics13090851 crossref_primary_10_1007_s10096_024_04888_7 crossref_primary_10_1016_j_watres_2024_121549 crossref_primary_10_3201_eid2212_160017 crossref_primary_10_1093_jac_dky458 crossref_primary_10_1099_mgen_0_000882 crossref_primary_10_1128_AEM_01913_20 crossref_primary_10_3389_fmed_2018_00265 crossref_primary_10_3390_ijms22179230 crossref_primary_10_1186_s13073_021_00892_0 crossref_primary_10_1099_ijsem_0_006264 crossref_primary_10_1038_s41598_024_62663_2 crossref_primary_10_4315_0362_028X_JFP_19_205 crossref_primary_10_2147_IDR_S347943 crossref_primary_10_1099_mgen_0_000814 crossref_primary_10_3389_fmicb_2022_911777 crossref_primary_10_3390_antibiotics13090843 crossref_primary_10_3389_fcimb_2023_1327092 crossref_primary_10_3390_molecules26030588 crossref_primary_10_3389_fbinf_2024_1411935 crossref_primary_10_1186_s12859_022_04809_5 crossref_primary_10_1038_s41598_022_14492_4 crossref_primary_10_1128_mra_00691_24 crossref_primary_10_1099_mgen_0_000826 crossref_primary_10_3390_foods12010223 crossref_primary_10_1139_cjm_2021_0012 crossref_primary_10_1128_mbio_01920_22 crossref_primary_10_2147_IDR_S455051 crossref_primary_10_1038_s41579_019_0315_1 crossref_primary_10_1128_spectrum_02896_22 crossref_primary_10_1186_s13756_024_01478_2 crossref_primary_10_3389_fmicb_2022_1011578 crossref_primary_10_1128_AEM_02829_17 crossref_primary_10_7554_eLife_85302 crossref_primary_10_1038_s41467_023_38902_x crossref_primary_10_2807_1560_7917_ES_2023_28_37_2200925 crossref_primary_10_1128_mra_00320_23 crossref_primary_10_1089_mdr_2021_0202 crossref_primary_10_1099_mgen_0_000846 crossref_primary_10_1093_femsre_fux013 crossref_primary_10_2807_1560_7917_ES_2018_23_27_1700497 crossref_primary_10_1007_s00203_023_03816_1 crossref_primary_10_3201_eid2908_230199 crossref_primary_10_3389_fcimb_2016_00077 crossref_primary_10_1128_MRA_00424_23 crossref_primary_10_1128_mbio_00497_22 crossref_primary_10_1128_MRA_00854_21 crossref_primary_10_1016_j_vetmic_2025_110488 crossref_primary_10_3109_23744235_2015_1062536 crossref_primary_10_1590_0074_02760220118 crossref_primary_10_1093_jac_dkw585 crossref_primary_10_3390_antibiotics12121662 crossref_primary_10_1016_j_meegid_2020_104584 crossref_primary_10_3390_pathogens13090723 crossref_primary_10_1556_030_65_2018_031 crossref_primary_10_1128_spectrum_04010_22 crossref_primary_10_3389_fcimb_2024_1351618 crossref_primary_10_1093_femsec_fiy149 crossref_primary_10_3390_ani13111796 crossref_primary_10_1128_AAC_02434_17 crossref_primary_10_1016_j_vetmic_2018_06_003 crossref_primary_10_1016_j_onehlt_2023_100559 crossref_primary_10_3390_microbiolres14010014 crossref_primary_10_1128_spectrum_03385_23 crossref_primary_10_1016_j_lwt_2024_117231 crossref_primary_10_1128_spectrum_02504_23 crossref_primary_10_3201_eid2805_212535 crossref_primary_10_3389_fmicb_2023_1304283 crossref_primary_10_3389_fcimb_2023_1060519 crossref_primary_10_1093_jac_dkw560 crossref_primary_10_1016_j_vas_2025_100428 crossref_primary_10_1128_AAC_02458_16 crossref_primary_10_1093_bib_bbaa059 crossref_primary_10_1093_lambio_ovac045 crossref_primary_10_1186_s13073_018_0587_5 crossref_primary_10_1016_j_ecoenv_2024_115971 crossref_primary_10_1016_j_ijid_2018_07_017 crossref_primary_10_2807_1560_7917_ES_2023_28_42_2300522 crossref_primary_10_1089_mdr_2021_0402 crossref_primary_10_1016_j_anaerobe_2025_102946 crossref_primary_10_1016_j_vetmic_2019_108538 crossref_primary_10_3390_antibiotics12121647 crossref_primary_10_1128_mbio_02515_23 crossref_primary_10_1038_s41598_021_92590_5 crossref_primary_10_1038_s43856_022_00115_6 crossref_primary_10_1128_spectrum_02849_23 crossref_primary_10_1128_MRA_00315_21 crossref_primary_10_3390_bacteria1030013 crossref_primary_10_1128_genomeA_01481_16 crossref_primary_10_2807_1560_7917_ES_2017_22_43_17_00032 crossref_primary_10_1093_gbe_evy168 crossref_primary_10_1038_s41598_024_78331_4 crossref_primary_10_1038_s41598_019_38943_7 crossref_primary_10_3390_insects14060540 crossref_primary_10_3390_pathogens13090760 crossref_primary_10_1093_jac_dkae281 crossref_primary_10_3389_fmicb_2021_807398 crossref_primary_10_1038_s41467_024_54418_4 crossref_primary_10_3390_antibiotics11020260 crossref_primary_10_1186_s12866_024_03306_4 crossref_primary_10_1038_s42003_022_03660_x crossref_primary_10_1016_j_onehlt_2023_100516 crossref_primary_10_1128_spectrum_01651_23 crossref_primary_10_1016_j_drup_2024_101137 crossref_primary_10_1128_aem_02517_21 crossref_primary_10_1128_mSphere_00337_18 crossref_primary_10_3390_ijms241311137 crossref_primary_10_2807_1560_7917_ES_2019_24_4_1800186 crossref_primary_10_1016_j_scitotenv_2024_169945 crossref_primary_10_1016_j_scitotenv_2024_177562 crossref_primary_10_1128_AAC_00989_17 crossref_primary_10_3390_antibiotics10050491 crossref_primary_10_1007_s42770_024_01288_z crossref_primary_10_1038_s41564_021_00870_7 crossref_primary_10_1016_j_ijfoodmicro_2019_05_022 crossref_primary_10_1016_j_vetmic_2021_109116 crossref_primary_10_1128_aem_00371_23 crossref_primary_10_1016_j_eimc_2024_10_002 crossref_primary_10_1007_s00203_024_04114_0 crossref_primary_10_1186_s12879_019_3763_3 crossref_primary_10_1016_j_plasmid_2018_12_001 crossref_primary_10_5808_GI_2019_17_4_e43 crossref_primary_10_1128_spectrum_01342_23 crossref_primary_10_3390_antibiotics13090898 crossref_primary_10_1186_s13756_023_01236_w crossref_primary_10_1128_spectrum_02160_22 crossref_primary_10_1038_ja_2017_41 crossref_primary_10_1038_s41559_022_01908_7 crossref_primary_10_1016_j_vetmic_2021_109120 crossref_primary_10_3390_antibiotics11010001 crossref_primary_10_3389_fmicb_2020_00425 crossref_primary_10_3390_antibiotics10060718 crossref_primary_10_1128_mSystems_00448_20 crossref_primary_10_3390_antibiotics12010084 crossref_primary_10_7554_eLife_91853 crossref_primary_10_3390_antibiotics9100705 crossref_primary_10_1186_s12917_024_04359_3 crossref_primary_10_3389_fmicb_2019_01862 crossref_primary_10_3390_antibiotics9100708 crossref_primary_10_1038_s41467_017_01532_1 crossref_primary_10_3389_fmicb_2019_01865 crossref_primary_10_3390_antibiotics12081266 crossref_primary_10_3390_antibiotics12081269 crossref_primary_10_1016_j_ecoenv_2020_110782 crossref_primary_10_1128_mra_00009_24 crossref_primary_10_3390_antibiotics12010098 crossref_primary_10_1016_j_plasmid_2021_102568 crossref_primary_10_3389_fmicb_2019_00542 crossref_primary_10_1371_journal_pntd_0008533 crossref_primary_10_1016_j_plasmid_2021_102563 crossref_primary_10_3389_fvets_2020_547891 crossref_primary_10_3389_fmicb_2016_00270 crossref_primary_10_3389_fmicb_2021_613791 crossref_primary_10_1016_j_fm_2022_104192 crossref_primary_10_1099_ijsem_0_004528 crossref_primary_10_3390_microorganisms12061231 crossref_primary_10_1128_mbio_03552_21 crossref_primary_10_31083_j_fbl2903112 crossref_primary_10_3389_fmicb_2021_659116 crossref_primary_10_3390_antibiotics12040749 crossref_primary_10_3390_children10101696 crossref_primary_10_1128_spectrum_00041_22 crossref_primary_10_4315_0362_028X_JFP_19_056 crossref_primary_10_3201_eid2603_191230 crossref_primary_10_3390_antibiotics12040733 crossref_primary_10_1016_j_jece_2022_107596 crossref_primary_10_1016_j_watres_2021_117907 crossref_primary_10_1128_mra_00148_24 crossref_primary_10_1128_MRA_01043_18 crossref_primary_10_1016_j_meegid_2019_104096 crossref_primary_10_1016_j_jiph_2020_01_003 crossref_primary_10_1016_j_hazadv_2023_100232 crossref_primary_10_1371_journal_pgph_0003763 crossref_primary_10_1038_s41467_018_07370_z crossref_primary_10_1099_mgen_0_001104 crossref_primary_10_1016_j_envpol_2022_120645 crossref_primary_10_3390_microorganisms9112239 crossref_primary_10_3389_fmicb_2019_00572 crossref_primary_10_3201_eid2209_151953 crossref_primary_10_1016_j_micpath_2025_107461 crossref_primary_10_1099_mgen_0_001119 crossref_primary_10_1186_s40168_017_0288_0 crossref_primary_10_1111_ijfs_17097 crossref_primary_10_1016_j_ygeno_2022_110368 crossref_primary_10_1016_j_ygeno_2022_110365 crossref_primary_10_1093_ismejo_wrae261 crossref_primary_10_1128_AAC_00382_19 crossref_primary_10_1128_spectrum_04204_22 crossref_primary_10_3389_fmicb_2024_1439363 crossref_primary_10_1128_aem_02297_23 crossref_primary_10_1111_zph_12427 crossref_primary_10_1186_s13567_022_01039_8 crossref_primary_10_1128_spectrum_01775_23 crossref_primary_10_1128_AAC_00556_20 crossref_primary_10_3389_fcimb_2024_1289134 crossref_primary_10_1099_mgen_0_001122 crossref_primary_10_1128_MRA_00826_21 crossref_primary_10_3390_antibiotics10091041 crossref_primary_10_1128_MRA_00429_20 crossref_primary_10_3389_fcimb_2024_1327131 crossref_primary_10_1128_MRA_00953_19 crossref_primary_10_1128_genomeA_01747_16 crossref_primary_10_1128_mSystems_00009_16 crossref_primary_10_1128_AAC_01743_20 crossref_primary_10_1099_mgen_0_001135 crossref_primary_10_1128_spectrum_04216_23 crossref_primary_10_1016_j_jgar_2020_05_002 crossref_primary_10_1099_mgen_0_001132 crossref_primary_10_2807_1560_7917_ES_2024_29_47_2400295 crossref_primary_10_1016_j_jgar_2024_03_019 crossref_primary_10_1128_mSphere_00990_20 crossref_primary_10_3390_microorganisms9112205 crossref_primary_10_1007_s10096_021_04309_z crossref_primary_10_1128_MRA_00826_19 crossref_primary_10_1128_spectrum_00614_24 crossref_primary_10_3390_ijms26020504 crossref_primary_10_1128_genomeA_00297_17 crossref_primary_10_1016_j_ijfoodmicro_2018_01_018 crossref_primary_10_3389_fmicb_2023_1153781 crossref_primary_10_1093_jacamr_dlad137 crossref_primary_10_3390_genes12081285 crossref_primary_10_3390_microorganisms8050739 crossref_primary_10_1007_s13205_020_02322_1 crossref_primary_10_1016_j_ijantimicag_2014_11_004 crossref_primary_10_1128_MRA_00607_21 crossref_primary_10_1080_21505594_2020_1859852 crossref_primary_10_3390_antibiotics12050943 crossref_primary_10_1128_mBio_02093_16 crossref_primary_10_1128_msphere_00709_20 crossref_primary_10_1128_spectrum_00731_23 crossref_primary_10_3389_fmicb_2023_1242369 crossref_primary_10_1016_j_plasmid_2021_102607 crossref_primary_10_3390_antibiotics12010010 crossref_primary_10_3389_fcimb_2024_1328390 crossref_primary_10_1016_j_cimid_2024_102234 crossref_primary_10_1038_s41598_017_18659_2 crossref_primary_10_1155_2018_5261719 crossref_primary_10_3390_antibiotics12091463 crossref_primary_10_1016_j_fm_2022_104112 crossref_primary_10_1128_spectrum_01954_21 crossref_primary_10_3389_fmicb_2021_759208 crossref_primary_10_1038_nmicrobiol_2016_27 crossref_primary_10_1128_mBio_02162_15 crossref_primary_10_3390_foods12030599 crossref_primary_10_3390_microbiolres15030095 crossref_primary_10_1186_s13756_021_00930_x crossref_primary_10_1089_mdr_2020_0146 crossref_primary_10_3389_fmed_2021_635206 crossref_primary_10_1128_mra_00140_22 crossref_primary_10_1099_mgen_0_000779 crossref_primary_10_1007_s10096_018_3356_x crossref_primary_10_1016_j_cofs_2016_08_005 crossref_primary_10_3389_fmicb_2017_01512 crossref_primary_10_1016_j_jhazmat_2022_129704 crossref_primary_10_1099_jmm_0_001569 crossref_primary_10_1016_j_diagmicrobio_2018_11_007 crossref_primary_10_1099_mgen_0_000770 crossref_primary_10_1099_mgen_0_000775 crossref_primary_10_3389_fmicb_2023_1074548 crossref_primary_10_1099_mgen_0_000773 crossref_primary_10_1007_s10096_021_04380_6 crossref_primary_10_1128_mBio_01945_19 crossref_primary_10_1128_genomeA_00756_16 crossref_primary_10_3389_fcimb_2021_673503 crossref_primary_10_1128_msphere_00238_22 crossref_primary_10_1099_mgen_0_000789 crossref_primary_10_1080_23744235_2023_2272624 crossref_primary_10_1128_genomeA_00435_16 crossref_primary_10_1128_msystems_01250_24 crossref_primary_10_1016_j_dib_2024_110552 crossref_primary_10_1099_mgen_0_000785 crossref_primary_10_1371_journal_pone_0161528 crossref_primary_10_2807_1560_7917_ES_2024_29_21_2400276 crossref_primary_10_1093_jac_dkab207 crossref_primary_10_1371_journal_pone_0168160 crossref_primary_10_1128_aac_01619_22 crossref_primary_10_1371_journal_pntd_0012666 crossref_primary_10_1128_mra_00071_24 crossref_primary_10_1099_mgen_0_000798 crossref_primary_10_3389_fmicb_2018_03209 crossref_primary_10_1099_mgen_0_000793 crossref_primary_10_1093_jac_dkx058 crossref_primary_10_1099_mgen_0_000797 crossref_primary_10_3389_fmicb_2020_00529 crossref_primary_10_3390_pathogens12060804 crossref_primary_10_1099_mgen_0_000796 crossref_primary_10_1128_MRA_01157_18 crossref_primary_10_1089_mdr_2020_0174 crossref_primary_10_3389_fmicb_2018_00188 crossref_primary_10_1371_journal_pone_0228250 crossref_primary_10_1186_s12941_023_00575_1 crossref_primary_10_1186_s12864_018_5137_4 crossref_primary_10_1016_j_ijfoodmicro_2024_110992 crossref_primary_10_1099_mgen_0_000733 crossref_primary_10_1099_mgen_0_000737 crossref_primary_10_1099_mgen_0_000736 crossref_primary_10_1016_j_psj_2023_102712 crossref_primary_10_1080_19490976_2020_1748257 crossref_primary_10_1038_s41467_023_44351_3 crossref_primary_10_1093_jac_dky369 crossref_primary_10_1016_j_cmi_2019_05_008 crossref_primary_10_1128_mSphere_00743_20 crossref_primary_10_1016_j_vetmic_2023_109772 crossref_primary_10_1128_mSystems_00935_20 crossref_primary_10_1128_MRA_00668_21 crossref_primary_10_2147_IDR_S427571 crossref_primary_10_1038_s41467_024_45761_7 crossref_primary_10_1099_mgen_0_000749 crossref_primary_10_1099_mgen_0_000748 crossref_primary_10_1016_j_jgar_2022_06_030 crossref_primary_10_1128_aac_01072_22 crossref_primary_10_1093_jac_dkx024 crossref_primary_10_1099_mgen_0_000741 crossref_primary_10_3390_ani14192833 crossref_primary_10_1016_j_psj_2021_101611 crossref_primary_10_3390_antibiotics11020213 crossref_primary_10_1007_s00705_022_05692_4 crossref_primary_10_1186_s12866_019_1598_0 crossref_primary_10_1016_j_jgar_2022_06_025 crossref_primary_10_1016_j_foodcont_2020_107483 crossref_primary_10_1016_j_heliyon_2023_e17439 crossref_primary_10_1128_spectrum_01617_21 crossref_primary_10_1038_s41598_019_47758_5 crossref_primary_10_1128_mra_00915_22 crossref_primary_10_3389_fmicb_2022_882422 crossref_primary_10_3390_microorganisms8040508 crossref_primary_10_3390_foods13233936 crossref_primary_10_7717_peerj_11376 crossref_primary_10_3389_fmed_2022_753085 crossref_primary_10_1016_j_fm_2017_08_017 crossref_primary_10_1128_mbio_00012_24 crossref_primary_10_1016_j_envpol_2021_116733 crossref_primary_10_1128_Spectrum_00262_21 crossref_primary_10_3390_antibiotics12020231 crossref_primary_10_1093_femsre_fuae017 crossref_primary_10_1093_jac_dkx006 crossref_primary_10_1128_genomeA_01029_16 crossref_primary_10_3389_fmicb_2021_659900 crossref_primary_10_1007_s00253_018_8765_3 crossref_primary_10_1128_genomeA_01366_17 crossref_primary_10_1371_journal_pone_0249138 crossref_primary_10_1016_j_fm_2020_103482 crossref_primary_10_1016_j_scitotenv_2019_06_533 crossref_primary_10_1128_AAC_01260_17 crossref_primary_10_3390_genes8120394 crossref_primary_10_1111_febs_15005 crossref_primary_10_1186_s12866_023_03074_7 crossref_primary_10_1128_mBio_01341_17 crossref_primary_10_3390_antibiotics12030436 crossref_primary_10_1099_mgen_0_000703 crossref_primary_10_1128_AEM_00571_20 crossref_primary_10_3390_antibiotics12030439 crossref_primary_10_1038_s41598_021_88316_2 crossref_primary_10_1016_j_vetmic_2019_03_001 crossref_primary_10_1089_fpd_2020_2810 crossref_primary_10_1186_s12866_024_03469_0 crossref_primary_10_1128_genomeA_00054_15 crossref_primary_10_1099_mgen_0_000710 crossref_primary_10_3389_fenvs_2017_00009 crossref_primary_10_1099_mgen_0_000716 crossref_primary_10_1371_journal_pone_0294565 crossref_primary_10_1016_j_meegid_2020_104643 crossref_primary_10_1128_AAC_01913_18 crossref_primary_10_1016_j_meegid_2025_105740 crossref_primary_10_1016_j_jgar_2023_12_010 crossref_primary_10_1016_j_meegid_2020_104645 crossref_primary_10_1128_MRA_00027_20 crossref_primary_10_3390_genes14051037 crossref_primary_10_1016_j_vetmic_2020_108822 crossref_primary_10_1186_s12866_023_02901_1 crossref_primary_10_1111_jam_15430 crossref_primary_10_1016_j_vetmic_2023_109792 crossref_primary_10_1099_mgen_0_000721 crossref_primary_10_1099_mgen_0_000725 crossref_primary_10_1016_j_dib_2023_109664 crossref_primary_10_1128_mSphere_00390_16 crossref_primary_10_3389_fmicb_2021_660094 crossref_primary_10_1016_j_dib_2022_108025 crossref_primary_10_1038_s41596_020_0346_0 crossref_primary_10_2217_fmb_2019_0091 crossref_primary_10_1093_bioadv_vbad153 crossref_primary_10_1128_genomeA_01158_16 crossref_primary_10_1099_jmm_0_001922 crossref_primary_10_1186_s13099_021_00468_8 crossref_primary_10_4103_ijmr_IJMR_2098_17 crossref_primary_10_1155_ijm_5087461 crossref_primary_10_1038_s41467_023_44285_w crossref_primary_10_2147_IDR_S360715 crossref_primary_10_3390_antibiotics11020196 crossref_primary_10_1128_spectrum_03509_22 crossref_primary_10_1128_ecosalplus_esp_0003_2018 crossref_primary_10_1128_mra_01217_21 crossref_primary_10_1371_journal_pone_0147954 crossref_primary_10_1093_lambio_ovad035 crossref_primary_10_1128_mra_00407_22 crossref_primary_10_1089_fpd_2018_2604 crossref_primary_10_1038_s41467_023_44272_1 crossref_primary_10_1128_AEM_00140_17 crossref_primary_10_1128_mBio_02303_18 crossref_primary_10_1186_s12864_015_1890_9 crossref_primary_10_3390_pathogens9100822 crossref_primary_10_1128_mra_00099_24 crossref_primary_10_1038_s42003_020_01148_0 crossref_primary_10_1016_j_meegid_2025_105737 crossref_primary_10_1128_aac_01189_22 crossref_primary_10_1016_j_micres_2023_127528 crossref_primary_10_1128_mSphere_00569_20 crossref_primary_10_3390_antibiotics11081127 crossref_primary_10_1016_j_jhin_2024_04_014 crossref_primary_10_3389_fmicb_2019_01797 crossref_primary_10_3389_fmicb_2016_01400 crossref_primary_10_1016_j_ijantimicag_2023_106896 crossref_primary_10_1128_mra_01332_19 crossref_primary_10_1016_j_micres_2022_127211 crossref_primary_10_1128_msphere_00591_20 crossref_primary_10_1099_acmi_0_000509_v4 crossref_primary_10_1007_s42770_023_01115_x crossref_primary_10_1007_s11033_020_05663_5 crossref_primary_10_1128_mra_01205_24 crossref_primary_10_1186_s13100_023_00292_8 crossref_primary_10_1371_journal_pmed_1004233 crossref_primary_10_1099_jmm_0_000624 crossref_primary_10_1093_femsec_fix158 crossref_primary_10_3389_fmicb_2023_1209195 crossref_primary_10_1128_Spectrum_01520_21 crossref_primary_10_3389_fmicb_2024_1437408 crossref_primary_10_3389_fmicb_2022_764760 crossref_primary_10_1016_j_vetmic_2021_109045 crossref_primary_10_1093_jambio_lxae037 crossref_primary_10_1002_mbo3_1246 crossref_primary_10_1093_femsec_fiab113 crossref_primary_10_1371_journal_pntd_0010704 crossref_primary_10_3390_antibiotics11020153 crossref_primary_10_3389_fmicb_2021_796040 crossref_primary_10_1099_mgen_0_001068 crossref_primary_10_1099_mgen_0_001073 crossref_primary_10_1099_mgen_0_001075 crossref_primary_10_1016_j_meegid_2020_104263 crossref_primary_10_1186_s12866_023_03032_3 crossref_primary_10_2807_1560_7917_ES_2022_27_49_2200245 crossref_primary_10_1128_JCM_02026_14 crossref_primary_10_1093_jac_dkae161 crossref_primary_10_3389_fmicb_2021_734649 crossref_primary_10_1016_j_micres_2022_127261 crossref_primary_10_1007_s13205_022_03273_5 crossref_primary_10_1093_jac_dkw411 crossref_primary_10_1128_mra_01082_23 crossref_primary_10_1099_mgen_0_001082 crossref_primary_10_1128_mra_00075_23 crossref_primary_10_1128_spectrum_04147_22 crossref_primary_10_1038_s41598_020_75608_2 crossref_primary_10_1007_s00284_024_03680_2 crossref_primary_10_2478_boku_2019_0007 crossref_primary_10_3390_antibiotics12030621 crossref_primary_10_2807_1560_7917_ES_2024_29_47_2400587 crossref_primary_10_3390_applmicrobiol4040102 crossref_primary_10_3390_microorganisms9020380 crossref_primary_10_3390_pathogens9050401 crossref_primary_10_3201_eid2412_180500 crossref_primary_10_3390_antibiotics12071122 crossref_primary_10_1371_journal_pone_0135936 crossref_primary_10_1038_s41598_017_15539_7 crossref_primary_10_1016_j_scitotenv_2023_168683 crossref_primary_10_3389_fmicb_2017_02135 crossref_primary_10_3390_ijms241612636 crossref_primary_10_3390_microorganisms11092274 crossref_primary_10_1186_s13568_024_01737_w crossref_primary_10_1016_j_carres_2021_108499 crossref_primary_10_3390_microorganisms9020376 crossref_primary_10_1016_j_scitotenv_2023_166026 crossref_primary_10_3390_ijms25031944 crossref_primary_10_1038_s41467_024_45757_3 crossref_primary_10_2147_IDR_S269766 crossref_primary_10_1099_mgen_0_001024 crossref_primary_10_3390_forensicsci3030031 crossref_primary_10_1016_j_lwt_2024_117180 crossref_primary_10_3389_fmicb_2021_626774 crossref_primary_10_3390_microorganisms10030579 crossref_primary_10_1016_j_scitotenv_2020_137497 crossref_primary_10_1016_j_aquaculture_2023_739704 crossref_primary_10_1128_IAI_00576_20 crossref_primary_10_1371_journal_pntd_0009755 crossref_primary_10_1128_MRA_00966_21 crossref_primary_10_1128_spectrum_01938_21 crossref_primary_10_1089_mdr_2017_0433 crossref_primary_10_1111_lam_13733 crossref_primary_10_1371_journal_pone_0309711 crossref_primary_10_1099_mgen_0_001032 crossref_primary_10_1016_j_microb_2024_100165 crossref_primary_10_3390_microorganisms10030582 crossref_primary_10_3389_fmicb_2016_00142 crossref_primary_10_1016_j_scitotenv_2025_179064 crossref_primary_10_1099_mgen_0_001035 crossref_primary_10_1016_j_micres_2024_127867 crossref_primary_10_3389_fvets_2024_1444957 crossref_primary_10_1128_AEM_01358_21 crossref_primary_10_1371_journal_pntd_0009748 crossref_primary_10_1016_j_foodres_2022_112023 crossref_primary_10_1093_cid_ciz1091 crossref_primary_10_1038_s41598_020_64616_x crossref_primary_10_1099_mgen_0_001048 crossref_primary_10_1016_j_micres_2024_127893 crossref_primary_10_1038_s41598_019_47688_2 crossref_primary_10_1099_mgen_0_001050 crossref_primary_10_1099_mgen_0_001051 crossref_primary_10_1128_spectrum_02158_21 crossref_primary_10_3390_microorganisms9030598 crossref_primary_10_18231_j_ijmr_2024_003 crossref_primary_10_1016_j_plasmid_2017_03_002 crossref_primary_10_1016_j_plasmid_2017_03_006 crossref_primary_10_1093_jac_dkab070 crossref_primary_10_1371_journal_ppat_1008998 crossref_primary_10_1128_MRA_00009_21 crossref_primary_10_1094_MPMI_11_21_0282_A crossref_primary_10_3389_fmicb_2022_811692 crossref_primary_10_1038_s41592_018_0301_y crossref_primary_10_1016_j_scitotenv_2023_164201 crossref_primary_10_3389_fmicb_2020_00108 crossref_primary_10_1128_spectrum_04716_22 crossref_primary_10_3390_antibiotics10010090 crossref_primary_10_1093_gbe_evx115 crossref_primary_10_1128_MRA_01732_18 crossref_primary_10_3389_fmicb_2022_926514 crossref_primary_10_3390_microorganisms10030532 crossref_primary_10_1016_j_idairyj_2025_106206 crossref_primary_10_3390_microorganisms9030576 crossref_primary_10_3389_fmicb_2022_800993 crossref_primary_10_3390_pathogens11111370 crossref_primary_10_3389_fmicb_2023_1283165 crossref_primary_10_3390_genes14040823 crossref_primary_10_3390_microorganisms10020314 crossref_primary_10_1093_femspd_ftab009 crossref_primary_10_3390_foods11142010 crossref_primary_10_3389_fcimb_2023_1266685 crossref_primary_10_1186_s12941_023_00632_9 crossref_primary_10_1186_s12941_024_00762_8 crossref_primary_10_1128_AEM_02136_18 crossref_primary_10_3390_pathogens11040481 crossref_primary_10_1186_s42522_023_00079_0 crossref_primary_10_5812_ijpr_143910 crossref_primary_10_3389_fmicb_2019_01753 crossref_primary_10_36233_0372_9311_430 crossref_primary_10_7883_yoken_JJID_2023_009 crossref_primary_10_1038_s41598_022_23690_z crossref_primary_10_1094_PHYTO_06_20_0243_R crossref_primary_10_3390_antibiotics12081330 crossref_primary_10_1099_mgen_0_001002 crossref_primary_10_3201_eid2209_1511953 crossref_primary_10_1016_j_scitotenv_2023_168608 crossref_primary_10_1016_j_meegid_2021_105014 crossref_primary_10_1186_s12941_024_00699_y crossref_primary_10_3389_fmicb_2016_00109 crossref_primary_10_3390_genes12121883 crossref_primary_10_1016_j_scitotenv_2022_156313 crossref_primary_10_1155_2024_5516117 crossref_primary_10_3389_fcimb_2024_1335096 crossref_primary_10_1099_mgen_0_001016 crossref_primary_10_1016_j_jhazmat_2024_134474 crossref_primary_10_1128_genomeA_01212_16 crossref_primary_10_1155_2024_9223696 crossref_primary_10_1128_mSphere_00107_20 crossref_primary_10_3390_microorganisms10030564 crossref_primary_10_1016_j_meegid_2022_105302 crossref_primary_10_1016_j_micpath_2024_107070 crossref_primary_10_1099_mgen_0_001020 crossref_primary_10_1186_s13073_023_01153_y crossref_primary_10_1038_s41467_023_36337_y crossref_primary_10_1038_s41396_021_00926_w crossref_primary_10_3390_antibiotics8030149 crossref_primary_10_1128_AAC_01103_16 crossref_primary_10_3390_pathogens12070903 crossref_primary_10_3390_antibiotics8030146 crossref_primary_10_1099_mgen_0_000698 crossref_primary_10_1128_mra_00619_23 crossref_primary_10_1099_mgen_0_000696 crossref_primary_10_1128_AAC_02417_18 crossref_primary_10_1099_ijsem_0_003387 crossref_primary_10_1099_ijsem_0_006413 crossref_primary_10_3389_fmicb_2021_736464 crossref_primary_10_1007_s11783_019_1119_2 crossref_primary_10_1371_journal_pone_0229451 crossref_primary_10_1093_jac_dkab131 crossref_primary_10_1128_spectrum_02511_22 crossref_primary_10_3390_antibiotics11030305 crossref_primary_10_1080_22221751_2018_1558961 crossref_primary_10_1089_fpd_2017_2329 crossref_primary_10_3390_antibiotics12081309 crossref_primary_10_3390_microorganisms10040784 crossref_primary_10_1128_mra_00047_23 crossref_primary_10_2174_1574893615999200608130029 crossref_primary_10_1111_vde_13040 crossref_primary_10_3390_antibiotics12010131 crossref_primary_10_1128_AAC_00912_17 crossref_primary_10_1016_j_scitotenv_2023_162564 crossref_primary_10_1016_j_jenvman_2024_122342 crossref_primary_10_1093_nar_gkad498 crossref_primary_10_1128_AAC_01161_18 crossref_primary_10_3389_fbioe_2022_1086261 crossref_primary_10_1128_AEM_02590_19 crossref_primary_10_1186_s12879_023_08539_8 crossref_primary_10_3390_pathogens12070929 crossref_primary_10_1128_genomeA_00205_18 crossref_primary_10_1093_jac_dkab119 crossref_primary_10_1099_ijsem_0_005100 crossref_primary_10_3389_fmicb_2021_785411 crossref_primary_10_1128_AAC_01516_16 crossref_primary_10_1128_msystems_00508_23 crossref_primary_10_3390_foods10010020 crossref_primary_10_1128_AAC_01173_16 crossref_primary_10_1371_journal_pone_0250084 crossref_primary_10_3390_microorganisms10030521 crossref_primary_10_3390_antibiotics13040320 crossref_primary_10_1128_spectrum_02478_22 crossref_primary_10_1186_s12864_022_08301_5 crossref_primary_10_3390_microorganisms11123000 crossref_primary_10_3389_fmicb_2018_02431 crossref_primary_10_1099_mgen_0_000658 crossref_primary_10_1128_genomeA_00161_16 crossref_primary_10_1128_mra_00378_23 crossref_primary_10_3389_fmicb_2021_714233 crossref_primary_10_1016_j_tim_2016_09_007 crossref_primary_10_1111_zph_12818 crossref_primary_10_1093_ofid_ofw129 crossref_primary_10_1111_zph_12812 crossref_primary_10_1080_14787210_2023_2184348 crossref_primary_10_1016_j_scitotenv_2024_173554 crossref_primary_10_3389_fmicb_2023_1184196 crossref_primary_10_3390_antibiotics12020372 crossref_primary_10_1016_j_cmi_2017_12_007 crossref_primary_10_1099_ijsem_0_006442 crossref_primary_10_1128_genomeA_00745_17 crossref_primary_10_1128_MRA_01097_18 crossref_primary_10_1093_jac_dky285 crossref_primary_10_1128_AAC_02244_19 crossref_primary_10_4014_jmb_2102_02027 crossref_primary_10_1099_acmi_0_000468_v3 crossref_primary_10_1016_j_jgar_2019_06_004 crossref_primary_10_1038_s41467_023_36222_8 crossref_primary_10_1099_mgen_0_000677 crossref_primary_10_1016_j_nmni_2024_101486 crossref_primary_10_1128_genomeA_01288_17 crossref_primary_10_1128_genomeA_01028_16 crossref_primary_10_1128_genomeA_01303_16 crossref_primary_10_1038_s41598_024_67838_5 crossref_primary_10_1099_ijsem_0_005146 crossref_primary_10_1128_AEM_01903_19 crossref_primary_10_3389_fmicb_2021_748471 crossref_primary_10_1099_mgen_0_000683 crossref_primary_10_1016_j_watres_2021_117261 crossref_primary_10_1007_s11250_019_02167_8 crossref_primary_10_3390_hygiene3010004 crossref_primary_10_1128_MRA_01395_19 crossref_primary_10_1128_mra_00792_22 crossref_primary_10_3390_microorganisms10101968 crossref_primary_10_1111_tbed_13686 crossref_primary_10_1099_jmm_0_001887 crossref_primary_10_1099_mgen_0_000617 crossref_primary_10_3390_antibiotics11081068 crossref_primary_10_1128_jb_00061_23 crossref_primary_10_1007_s11259_022_09929_0 crossref_primary_10_1080_22221751_2024_2408322 crossref_primary_10_1089_mdr_2021_0031 crossref_primary_10_1186_s12859_021_04401_3 crossref_primary_10_1016_j_jgar_2023_07_004 crossref_primary_10_2147_IDR_S249357 crossref_primary_10_1007_s11356_021_15437_6 crossref_primary_10_1128_msystems_01180_21 crossref_primary_10_1016_j_vetmic_2022_109379 crossref_primary_10_1016_j_csbj_2021_05_034 crossref_primary_10_1128_AEM_01129_16 crossref_primary_10_1186_s13073_025_01428_6 crossref_primary_10_3390_pathogens11121528 crossref_primary_10_1128_genomeA_00844_17 crossref_primary_10_1016_j_scitotenv_2023_169116 crossref_primary_10_3389_fcimb_2024_1471477 crossref_primary_10_1128_spectrum_04478_22 crossref_primary_10_3390_vetsci10090530 crossref_primary_10_3390_microorganisms9040866 crossref_primary_10_1016_j_drup_2023_101036 crossref_primary_10_3389_fmicb_2025_1471121 crossref_primary_10_1128_AAC_01291_15 crossref_primary_10_1093_jacamr_dlad089 crossref_primary_10_1128_AAC_00841_17 crossref_primary_10_1128_mra_00926_24 crossref_primary_10_1128_msphere_00775_20 crossref_primary_10_3390_microorganisms9040834 crossref_primary_10_1099_mgen_0_000634 crossref_primary_10_1186_s12864_023_09626_5 crossref_primary_10_1099_mgen_0_000630 crossref_primary_10_1007_s42770_021_00528_w crossref_primary_10_3390_antibiotics12020334 crossref_primary_10_1128_MRA_01250_19 crossref_primary_10_3389_fmicb_2018_01197 crossref_primary_10_1016_j_jhin_2022_03_015 crossref_primary_10_1186_s40168_022_01368_y crossref_primary_10_1038_s41598_021_95285_z crossref_primary_10_1099_mgen_0_000647 crossref_primary_10_1016_j_ijmm_2020_151453 crossref_primary_10_1093_jacamr_dlad061 crossref_primary_10_1038_s41467_022_28342_4 crossref_primary_10_1128_jcm_01847_22 crossref_primary_10_3390_ijms25084494 crossref_primary_10_26599_FSHW_2022_9250062 crossref_primary_10_3390_antibiotics11020123 crossref_primary_10_1038_s43705_023_00293_x crossref_primary_10_1371_journal_pgen_1008850 crossref_primary_10_1128_mra_00165_22 crossref_primary_10_1093_jac_dkz550 crossref_primary_10_1038_s41467_019_13118_0 crossref_primary_10_1128_aem_00749_24 crossref_primary_10_3389_fmicb_2019_02267 crossref_primary_10_1093_jacamr_dlad067 crossref_primary_10_3390_microorganisms10020292 crossref_primary_10_1128_msystems_00729_21 crossref_primary_10_3390_microorganisms11092304 crossref_primary_10_1016_j_vetmic_2021_109050 crossref_primary_10_3390_microorganisms7090299 crossref_primary_10_1128_mSphere_01297_20 crossref_primary_10_1016_j_ijmm_2020_151448 crossref_primary_10_3390_microorganisms10010089 crossref_primary_10_1038_s41598_021_85724_2 crossref_primary_10_7717_peerj_11079 crossref_primary_10_1128_AAC_01319_15 crossref_primary_10_1016_j_ijantimicag_2022_106551 crossref_primary_10_1128_AEM_01036_21 crossref_primary_10_1128_AEM_01503_17 crossref_primary_10_3389_fmicb_2021_732068 crossref_primary_10_2147_IDR_S403448 crossref_primary_10_1093_jac_dkz526 crossref_primary_10_3390_antibiotics9040192 crossref_primary_10_1016_j_dib_2018_03_129 crossref_primary_10_1093_molbev_msac115 crossref_primary_10_3390_microorganisms9040829 crossref_primary_10_1128_MRA_01073_18 crossref_primary_10_2147_IDR_S459649 crossref_primary_10_1093_gigascience_giz066 crossref_primary_10_4155_fsoa_2017_0063 crossref_primary_10_1016_j_ijantimicag_2022_106561 crossref_primary_10_1128_msystems_01019_21 crossref_primary_10_3390_antibiotics12101559 crossref_primary_10_3390_vetsci10040242 crossref_primary_10_1021_acsinfecdis_8b00240 crossref_primary_10_1016_j_jgar_2022_10_006 crossref_primary_10_1371_journal_pone_0193820 crossref_primary_10_30699_ijmm_17_1_90 crossref_primary_10_1007_s10096_023_04582_0 crossref_primary_10_2147_IDR_S357965 crossref_primary_10_3390_pathogens11121500 crossref_primary_10_1128_aac_01095_22 crossref_primary_10_1093_jac_dkz507 crossref_primary_10_1099_mgen_0_000605 crossref_primary_10_1099_mgen_0_000604 crossref_primary_10_1093_jac_dkw477 crossref_primary_10_1128_MRA_00888_18 crossref_primary_10_3390_biology12101296 crossref_primary_10_1038_ncomms14515 crossref_primary_10_1016_j_celrep_2024_114351 crossref_primary_10_3389_fmicb_2022_893474 crossref_primary_10_1128_MRA_00783_20 crossref_primary_10_1007_s11356_023_25618_0 crossref_primary_10_1099_mgen_0_000609 crossref_primary_10_3390_antibiotics13040363 crossref_primary_10_1186_s12879_024_09635_z crossref_primary_10_1371_journal_pone_0294424 crossref_primary_10_3389_fmicb_2022_857720 crossref_primary_10_3389_fmicb_2018_00715 crossref_primary_10_1016_j_envpol_2023_122476 crossref_primary_10_1128_AAC_01911_16 crossref_primary_10_1094_PHYTO_12_20_0550_R crossref_primary_10_1038_s41467_020_18647_7 crossref_primary_10_1128_AAC_01396_18 crossref_primary_10_3390_microorganisms9050947 crossref_primary_10_3390_antibiotics12111602 crossref_primary_10_3390_genes14091710 crossref_primary_10_1016_j_isci_2024_110402 crossref_primary_10_1371_journal_ppat_1012992 crossref_primary_10_1016_j_jgar_2018_10_014 crossref_primary_10_1016_j_jgar_2018_10_016 crossref_primary_10_1016_j_ijantimicag_2023_106985 crossref_primary_10_1093_jac_dkw335 crossref_primary_10_1128_aem_01579_24 crossref_primary_10_1016_j_micres_2022_127109 crossref_primary_10_3201_eid2909_230390 crossref_primary_10_1128_spectrum_03956_23 crossref_primary_10_3390_antibiotics11081006 crossref_primary_10_1099_jmm_0_001823 crossref_primary_10_1186_s13099_021_00469_7 crossref_primary_10_1038_s43705_022_00163_y crossref_primary_10_1128_spectrum_04710_22 crossref_primary_10_1371_journal_pbio_3000465 crossref_primary_10_1016_j_jhin_2023_11_016 crossref_primary_10_3389_fvets_2025_1541964 crossref_primary_10_1128_CMR_00088_17 crossref_primary_10_1186_s12866_023_03153_9 crossref_primary_10_1093_jac_dkw318 crossref_primary_10_1016_j_ajic_2018_12_016 crossref_primary_10_1128_mra_00397_24 crossref_primary_10_3389_fmicb_2019_01687 crossref_primary_10_1186_s40793_017_0272_0 crossref_primary_10_3390_pathogens9050330 crossref_primary_10_3389_fmicb_2019_00364 crossref_primary_10_3390_genes14020520 crossref_primary_10_3389_fmicb_2020_00294 crossref_primary_10_1128_JCM_02198_20 crossref_primary_10_1002_mbo3_1368 crossref_primary_10_3389_fmicb_2020_02007 crossref_primary_10_1093_cid_ciy027 crossref_primary_10_1016_j_micres_2022_127151 crossref_primary_10_1128_AEM_02402_16 crossref_primary_10_1016_j_mib_2020_02_009 crossref_primary_10_1128_mSphere_00704_19 crossref_primary_10_1089_fpd_2019_2767 crossref_primary_10_3390_microorganisms9020242 crossref_primary_10_1016_j_ijfoodmicro_2025_111081 crossref_primary_10_1016_j_dib_2023_109965 crossref_primary_10_1016_j_ijfoodmicro_2025_111085 crossref_primary_10_1021_acs_est_9b03486 crossref_primary_10_1038_s41564_022_01216_7 crossref_primary_10_1016_j_ijfoodmicro_2022_109555 crossref_primary_10_1128_MRA_01334_18 crossref_primary_10_1093_femsec_fix015 crossref_primary_10_1016_j_micres_2024_127702 crossref_primary_10_1128_mra_01024_23 crossref_primary_10_4103_ijmr_IJMR_2077_17 crossref_primary_10_1093_jac_dkae032 crossref_primary_10_1093_jac_dkae033 crossref_primary_10_3389_fpubh_2021_809753 crossref_primary_10_1002_mbo3_1349 crossref_primary_10_1128_MRA_01687_18 crossref_primary_10_1016_j_micres_2022_127136 crossref_primary_10_1016_j_micres_2024_127730 crossref_primary_10_1093_jac_dkae029 crossref_primary_10_1128_spectrum_04505_22 crossref_primary_10_2807_1560_7917_ES_2019_24_32_1900149 crossref_primary_10_1093_jac_dkae023 crossref_primary_10_1128_MRA_01135_20 crossref_primary_10_3389_fmicb_2024_1398262 crossref_primary_10_1080_19490976_2023_2223332 crossref_primary_10_3389_fmicb_2021_702956 crossref_primary_10_1371_journal_pone_0237886 crossref_primary_10_1016_j_ijantimicag_2017_03_007 crossref_primary_10_1128_MRA_00305_23 crossref_primary_10_1128_spectrum_00656_22 crossref_primary_10_1128_MRA_01069_20 crossref_primary_10_1007_s10096_023_04576_y crossref_primary_10_1371_journal_pntd_0007868 crossref_primary_10_1371_journal_pone_0227605 crossref_primary_10_1007_s10123_023_00454_x crossref_primary_10_1371_journal_pntd_0005274 crossref_primary_10_1002_jobm_202000416 crossref_primary_10_1016_j_jgar_2022_09_014 crossref_primary_10_1016_j_foodres_2020_109406 crossref_primary_10_1016_j_ijfoodmicro_2021_109247 crossref_primary_10_2478_jvetres_2022_0021 crossref_primary_10_1016_j_fct_2023_113972 crossref_primary_10_1016_j_scitotenv_2019_03_110 crossref_primary_10_1016_j_ijantimicag_2018_01_015 crossref_primary_10_3389_fmicb_2020_01524 crossref_primary_10_3389_fmicb_2024_1334268 crossref_primary_10_1080_22221751_2021_1882884 crossref_primary_10_1128_mra_00978_21 crossref_primary_10_3389_fmicb_2019_02961 crossref_primary_10_1016_j_jhazmat_2022_129476 crossref_primary_10_1371_journal_pone_0254382 crossref_primary_10_3389_fcimb_2020_563482 crossref_primary_10_3390_ijms241612729 crossref_primary_10_1016_j_scitotenv_2021_150641 crossref_primary_10_3390_genes11111307 crossref_primary_10_1016_j_scitotenv_2022_154488 crossref_primary_10_1089_mdr_2022_0229 crossref_primary_10_1128_spectrum_02376_21 crossref_primary_10_3390_antibiotics12071206 crossref_primary_10_1016_j_jgar_2024_02_014 crossref_primary_10_1016_j_jhazmat_2023_130725 crossref_primary_10_1002_mbo3_1397 crossref_primary_10_1371_journal_pone_0243681 crossref_primary_10_1128_AAC_00091_21 crossref_primary_10_33073_pjm_2024_032 crossref_primary_10_1590_0001_376520182018762 crossref_primary_10_1093_femsle_fnaa043 crossref_primary_10_3389_fmicb_2019_02934 crossref_primary_10_1371_journal_pone_0224518 crossref_primary_10_3390_pathogens9121031 crossref_primary_10_1128_mra_00827_22 crossref_primary_10_1038_s41598_021_83661_8 crossref_primary_10_1111_jam_13907 crossref_primary_10_1128_mBio_00943_18 crossref_primary_10_1007_s12275_022_2100_5 crossref_primary_10_1038_srep33660 crossref_primary_10_1093_jac_dku521 crossref_primary_10_3389_fmicb_2024_1404491 crossref_primary_10_3390_plants11172231 crossref_primary_10_3390_life14121691 crossref_primary_10_2134_jeq2018_04_0139 crossref_primary_10_1128_msystems_01212_21 crossref_primary_10_1038_s41598_025_90414_4 crossref_primary_10_1128_spectrum_04144_22 crossref_primary_10_1093_bib_bbx162 crossref_primary_10_1128_spectrum_00741_22 crossref_primary_10_1128_AAC_02497_17 crossref_primary_10_1128_aem_01114_22 crossref_primary_10_1016_j_scitotenv_2024_172068 crossref_primary_10_1128_msphere_00480_23 crossref_primary_10_1186_s12864_023_09818_z crossref_primary_10_1016_j_envpol_2022_119437 crossref_primary_10_1371_journal_pone_0232130 crossref_primary_10_1093_jacamr_dlab147 crossref_primary_10_1016_j_lwt_2022_114280 crossref_primary_10_7554_eLife_91853_3 crossref_primary_10_1016_j_isci_2024_111720 crossref_primary_10_1128_JCM_00081_16 crossref_primary_10_1016_j_ijmm_2018_06_005 crossref_primary_10_1111_zph_12680 crossref_primary_10_1128_MRA_00089_20 crossref_primary_10_1128_AAC_01814_17 crossref_primary_10_3389_fmicb_2020_00248 crossref_primary_10_3389_fmicb_2020_519169 crossref_primary_10_1111_lam_13685 crossref_primary_10_1128_AEM_03030_18 crossref_primary_10_7554_eLife_101241 crossref_primary_10_1128_AAC_00452_16 crossref_primary_10_3389_fmicb_2022_993454 crossref_primary_10_1371_journal_pone_0161225 crossref_primary_10_1128_genomeA_00676_17 crossref_primary_10_1128_spectrum_01797_24 crossref_primary_10_1111_zph_12691 crossref_primary_10_3389_fmicb_2020_592735 crossref_primary_10_1128_spectrum_01449_22 crossref_primary_10_1016_j_jinf_2019_07_009 crossref_primary_10_1016_j_meegid_2021_105122 crossref_primary_10_3389_fmicb_2021_740348 crossref_primary_10_3390_antibiotics11091253 crossref_primary_10_1016_j_ijmm_2018_06_012 crossref_primary_10_1186_s12864_024_10906_x crossref_primary_10_1128_aac_00030_23 crossref_primary_10_1016_j_jhazmat_2024_134660 crossref_primary_10_1099_mgen_0_000571 crossref_primary_10_1186_s13756_021_00941_8 crossref_primary_10_1016_j_diagmicrobio_2024_116356 crossref_primary_10_1089_mdr_2019_0043 crossref_primary_10_1089_mdr_2019_0045 crossref_primary_10_3389_fmicb_2022_930777 crossref_primary_10_1093_jac_dkac347 crossref_primary_10_1080_03079457_2020_1809634 crossref_primary_10_1016_j_jhin_2018_11_019 crossref_primary_10_1186_s13099_018_0249_6 crossref_primary_10_1128_genomeA_01096_16 crossref_primary_10_1016_j_ijfoodmicro_2023_110086 crossref_primary_10_1128_spectrum_01907_21 crossref_primary_10_1099_mgen_0_000583 crossref_primary_10_3389_fpubh_2023_1290912 crossref_primary_10_1128_genomeA_01153_15 crossref_primary_10_1099_mic_0_000768 crossref_primary_10_1089_mdr_2019_0058 crossref_primary_10_3390_antibiotics11040496 crossref_primary_10_1371_journal_pgen_1008114 crossref_primary_10_1128_mBio_03188_20 crossref_primary_10_1128_AAC_00488_17 crossref_primary_10_1038_s41598_020_61002_5 crossref_primary_10_1093_jac_dkac331 crossref_primary_10_1016_j_diagmicrobio_2018_12_002 crossref_primary_10_1128_spectrum_04189_22 crossref_primary_10_1016_j_plasmid_2020_102541 crossref_primary_10_1128_spectrum_02659_22 crossref_primary_10_1371_journal_pone_0311306 crossref_primary_10_1038_s42003_021_01949_x crossref_primary_10_1128_aac_01459_23 crossref_primary_10_1099_mgen_0_000597 crossref_primary_10_1155_2018_1535209 crossref_primary_10_1093_jac_dkac326 crossref_primary_10_1128_spectrum_02408_21 crossref_primary_10_7717_peerj_9700 crossref_primary_10_1093_jac_dkac329 crossref_primary_10_3389_fpubh_2022_1053785 crossref_primary_10_1186_s13567_024_01302_0 crossref_primary_10_1186_s12866_023_02862_5 crossref_primary_10_1128_msystems_00726_24 crossref_primary_10_3389_fmicb_2022_983294 crossref_primary_10_1371_journal_pone_0136387 crossref_primary_10_1128_AEM_02703_16 crossref_primary_10_1186_s13073_022_01040_y crossref_primary_10_1128_AAC_02623_16 crossref_primary_10_1016_j_plasmid_2020_102529 crossref_primary_10_1371_journal_pone_0198526 crossref_primary_10_1016_j_plasmid_2020_102528 crossref_primary_10_1128_aem_01791_23 crossref_primary_10_1128_mBio_00542_18 crossref_primary_10_1080_14787210_2022_2013806 crossref_primary_10_1128_mra_01142_23 crossref_primary_10_1128_genomeA_00287_17 crossref_primary_10_3390_antibiotics11040431 crossref_primary_10_1099_mgen_0_000531 crossref_primary_10_1099_mgen_0_000530 crossref_primary_10_1128_JCM_00535_17 crossref_primary_10_3389_fmicb_2023_1150070 crossref_primary_10_1128_mra_00252_22 crossref_primary_10_1128_AAC_02201_18 crossref_primary_10_1038_s41396_020_00819_4 crossref_primary_10_1186_s40793_023_00482_0 crossref_primary_10_1007_s10096_019_03597_w crossref_primary_10_1016_j_nmni_2021_100840 crossref_primary_10_3389_fmicb_2017_00411 crossref_primary_10_3389_fmicb_2021_694922 crossref_primary_10_1016_j_envint_2022_107516 crossref_primary_10_1093_jac_dkz489 crossref_primary_10_1016_j_plasmid_2020_102502 crossref_primary_10_1128_mra_01097_22 crossref_primary_10_1016_j_plasmid_2020_102505 crossref_primary_10_1128_spectrum_01242_22 crossref_primary_10_1038_s41564_023_01472_1 crossref_primary_10_1099_mic_0_001204 crossref_primary_10_48022_mbl_2308_08008 crossref_primary_10_1371_journal_pone_0186576 crossref_primary_10_1186_s44280_023_00033_9 crossref_primary_10_1371_journal_pone_0296109 crossref_primary_10_1371_journal_pone_0265884 crossref_primary_10_3201_eid2209_160177 crossref_primary_10_3389_fmicb_2020_01611 crossref_primary_10_1099_mgen_0_000550 crossref_primary_10_3746_jkfn_2024_53_11_1127 crossref_primary_10_3390_pathogens13020112 crossref_primary_10_1128_mSphere_00424_21 crossref_primary_10_1016_j_imu_2023_101441 crossref_primary_10_1128_MRA_00780_20 crossref_primary_10_1128_spectrum_02924_23 crossref_primary_10_1016_j_jenvman_2023_118737 crossref_primary_10_1128_genomeA_00299_17 crossref_primary_10_1016_j_ijheh_2022_113967 crossref_primary_10_1093_cid_ciaa1773 crossref_primary_10_1099_mgen_0_000567 crossref_primary_10_1089_fpd_2021_0113 crossref_primary_10_1093_femsle_fnaa127 crossref_primary_10_3201_eid2911_230463 crossref_primary_10_3390_pathogens11101192 crossref_primary_10_1089_mdr_2021_0164 crossref_primary_10_3389_fmicb_2022_987613 crossref_primary_10_1093_infdis_jiw240 crossref_primary_10_1099_mgen_0_000565 crossref_primary_10_1016_j_syapm_2020_126174 crossref_primary_10_3389_fmicb_2024_1352851 crossref_primary_10_2147_IDR_S415373 crossref_primary_10_3389_fmicb_2017_01717 crossref_primary_10_1371_journal_pone_0180493 crossref_primary_10_1128_Spectrum_01122_21 crossref_primary_10_3390_antibiotics9050246 crossref_primary_10_3389_fmicb_2020_02049 crossref_primary_10_3390_microorganisms8070978 crossref_primary_10_3389_fmicb_2021_653595 crossref_primary_10_1016_j_dib_2023_109005 crossref_primary_10_1093_jac_dkz462 crossref_primary_10_1016_j_ijantimicag_2021_106350 crossref_primary_10_1128_AAC_01152_21 crossref_primary_10_3389_fmicb_2019_02151 crossref_primary_10_3390_biology11060871 crossref_primary_10_1093_jac_dky111 crossref_primary_10_3390_antibiotics13030227 crossref_primary_10_1016_j_wroa_2020_100065 crossref_primary_10_3389_fmicb_2024_1456569 crossref_primary_10_1016_j_syapm_2018_03_008 crossref_primary_10_1016_j_mimet_2023_106815 crossref_primary_10_3389_fcimb_2017_00126 crossref_primary_10_1099_mgen_0_000509 crossref_primary_10_1016_j_envint_2024_108554 crossref_primary_10_3389_fmicb_2020_02068 crossref_primary_10_3389_fpls_2021_660620 crossref_primary_10_1016_j_jgar_2018_08_015 crossref_primary_10_1093_jac_dkz431 crossref_primary_10_1016_j_ijantimicag_2022_106615 crossref_primary_10_3390_antibiotics9050261 crossref_primary_10_3390_genes11101189 crossref_primary_10_1089_fpd_2019_2700 crossref_primary_10_1099_mgen_0_000510 crossref_primary_10_3390_antibiotics9050267 crossref_primary_10_1128_spectrum_03639_22 crossref_primary_10_1021_acs_est_3c10895 crossref_primary_10_1016_j_jgar_2022_05_021 crossref_primary_10_1016_j_crmicr_2020_100012 crossref_primary_10_1128_mra_01272_24 crossref_primary_10_1128_spectrum_01595_22 crossref_primary_10_1128_AEM_02873_19 crossref_primary_10_1128_genomeA_00064_16 crossref_primary_10_1590_s1678_9946202163038 crossref_primary_10_3389_fmicb_2020_02063 crossref_primary_10_3389_fmicb_2022_803043 crossref_primary_10_3389_fpubh_2022_1070258 crossref_primary_10_1016_j_ijantimicag_2023_106929 crossref_primary_10_1016_j_ijantimicag_2021_106327 crossref_primary_10_1016_j_jgar_2022_05_006 crossref_primary_10_3389_fmicb_2024_1268216 crossref_primary_10_1099_mgen_0_000522 crossref_primary_10_3390_microorganisms9040720 crossref_primary_10_1016_j_ijantimicag_2023_106921 crossref_primary_10_1099_mgen_0_000520 crossref_primary_10_1093_jac_dkaa535 crossref_primary_10_1128_spectrum_03863_22 crossref_primary_10_1016_j_jgar_2024_06_005 crossref_primary_10_1111_jam_15648 crossref_primary_10_1016_j_plasmid_2018_09_007 crossref_primary_10_1002_mbo3_1403 crossref_primary_10_1002_mbo3_1402 crossref_primary_10_1111_apm_12753 crossref_primary_10_1371_journal_pone_0218638 crossref_primary_10_1128_genomeA_01007_15 crossref_primary_10_1002_mbo3_1409 crossref_primary_10_1186_s13073_019_0699_6 crossref_primary_10_1128_genomeA_00742_15 crossref_primary_10_1111_nyas_13273 crossref_primary_10_2147_IDR_S386345 crossref_primary_10_1186_s13568_018_0646_8 crossref_primary_10_1016_j_jhazmat_2023_132567 crossref_primary_10_1128_mra_01260_24 crossref_primary_10_1186_s12864_023_09867_4 crossref_primary_10_3389_fmicb_2018_03077 crossref_primary_10_1016_j_jgar_2017_11_014 crossref_primary_10_1128_spectrum_00047_24 crossref_primary_10_1007_s40121_024_01097_9 crossref_primary_10_1099_jmm_0_001736 crossref_primary_10_1093_jac_dkaa519 crossref_primary_10_1111_nyas_14595 crossref_primary_10_1038_s41467_024_52238_0 crossref_primary_10_1186_s12866_017_0984_8 crossref_primary_10_1128_spectrum_01291_22 crossref_primary_10_1016_j_ijantimicag_2020_106040 crossref_primary_10_1038_s41467_018_06393_w crossref_primary_10_1016_j_ijantimicag_2021_106382 crossref_primary_10_3389_fmicb_2020_02094 crossref_primary_10_3389_fvets_2019_00502 crossref_primary_10_1016_j_chemosphere_2020_126729 crossref_primary_10_3389_fmicb_2018_03067 crossref_primary_10_1099_jmm_0_001742 crossref_primary_10_1038_s41598_020_64544_w crossref_primary_10_1128_AAC_02412_20 crossref_primary_10_1186_s12859_021_04270_w crossref_primary_10_1016_j_heliyon_2024_e27326 crossref_primary_10_3389_fcimb_2020_00085 crossref_primary_10_1038_s41467_024_51374_x crossref_primary_10_1007_s11356_022_19840_5 crossref_primary_10_1128_AAC_01083_21 crossref_primary_10_1128_mra_00982_23 crossref_primary_10_1111_apm_12720 crossref_primary_10_1128_spectrum_01197_22 crossref_primary_10_3390_microorganisms9010052 crossref_primary_10_1093_jac_dkw353 crossref_primary_10_1111_nyas_13289 crossref_primary_10_1111_nyas_13282 crossref_primary_10_3201_eid2404_171619 crossref_primary_10_1016_j_cmi_2018_11_004 crossref_primary_10_1134_S1022795420030035 crossref_primary_10_3389_fmicb_2023_1104164 crossref_primary_10_1093_jac_dkw360 crossref_primary_10_1111_1749_4877_12637 crossref_primary_10_3389_fmicb_2023_1175304 crossref_primary_10_1128_mra_01166_21 |
| Cites_doi | 10.1016/j.mimet.2005.03.018 10.1128/AAC.01297-12 10.1128/AAC.48.9.3332-3337.2004 10.1093/jac/dkt235 10.1038/234222a0 10.1093/jac/dkq347 10.1093/jac/dkq101 10.1093/jac/dkq269 10.1093/jac/dks114 10.1186/1471-2105-11-595 10.1128/AAC.00645-08 10.1093/jac/dks387 10.1128/mr.52.3.375-395.1988 10.1128/AAC.05116-11 10.1016/j.plasmid.2004.06.006 10.1128/AAC.00165-11 10.1128/iai.48.1.175-182.1985 10.1016/j.micinf.2005.12.027 10.1093/jac/dkr225 10.1371/journal.pone.0034752 10.1016/j.plasmid.2012.03.001 10.1128/AAC.00688-09 10.1093/nar/gkq1189 10.1128/AAC.05308-11 10.1093/jac/dkn470 10.3201/eid1704.101009 10.1093/jac/dks357 10.1093/jac/dks496 10.1371/journal.pone.0040438 10.1093/jac/dks261 10.1093/nar/28.10.2177 10.1128/JCM.06094-11 10.1093/jac/dkn131 10.1111/j.1574-6968.2011.02432.x |
| ContentType | Journal Article |
| Copyright | 2015 INIST-CNRS Copyright © 2014, American Society for Microbiology. All Rights Reserved. Copyright © 2014, American Society for Microbiology. All Rights Reserved. 2014 American Society for Microbiology |
| Copyright_xml | – notice: 2015 INIST-CNRS – notice: Copyright © 2014, American Society for Microbiology. All Rights Reserved. – notice: Copyright © 2014, American Society for Microbiology. All Rights Reserved. 2014 American Society for Microbiology |
| DBID | AAYXX CITATION IQODW CGR CUY CVF ECM EIF NPM 7T7 8FD C1K FR3 P64 7X8 5PM |
| DOI | 10.1128/AAC.02412-14 |
| DatabaseName | CrossRef Pascal-Francis Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed Industrial and Applied Microbiology Abstracts (Microbiology A) Technology Research Database Environmental Sciences and Pollution Management Engineering Research Database Biotechnology and BioEngineering Abstracts MEDLINE - Academic PubMed Central (Full Participant titles) |
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) Engineering Research Database Technology Research Database Industrial and Applied Microbiology Abstracts (Microbiology A) Biotechnology and BioEngineering Abstracts Environmental Sciences and Pollution Management MEDLINE - Academic |
| DatabaseTitleList | CrossRef MEDLINE - Academic Engineering Research Database MEDLINE |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Medicine Biology Pharmacy, Therapeutics, & Pharmacology |
| EISSN | 1098-6596 |
| EndPage | 3903 |
| ExternalDocumentID | PMC4068535 02412-14 24777092 28577247 10_1128_AAC_02412_14 |
| Genre | Research Support, Non-U.S. Gov't Journal Article |
| GroupedDBID | --- .55 .GJ 0R~ 23M 2WC 39C 3O- 4.4 53G 5GY 5RE 5VS 6J9 AAGFI AAYXX ACGFO ADBBV AENEX AGNAY AGVNZ AI. ALMA_UNASSIGNED_HOLDINGS AOIJS BAWUL BTFSW C1A CITATION CS3 DIK E3Z EBS EJD F5P FRP GX1 H13 HH5 HYE HZ~ H~9 J5H K-O KQ8 L7B LSO MVM NEJ O9- OK1 P2P RHI RNS RPM RSF TR2 UHB VH1 W2D W8F WH7 WHG WOQ X7M X7N XOL Y6R ZGI ZXP ~A~ IQODW CGR CUY CVF ECM EIF NPM RHF - 0R 55 AAPBV ABFLS ADACO BXI HZ ZA5 7T7 8FD C1K FR3 P64 7X8 5PM |
| ID | FETCH-LOGICAL-a481t-3f3076eabebcffc32206eff92e55f7cf907c4804355ee381258f81330b3785863 |
| ISSN | 0066-4804 1098-6596 |
| IngestDate | Thu Aug 21 13:55:13 EDT 2025 Fri Sep 05 07:28:25 EDT 2025 Fri Sep 05 13:46:04 EDT 2025 Tue Dec 28 13:59:21 EST 2021 Thu Jan 02 22:19:07 EST 2025 Wed Apr 02 07:20:28 EDT 2025 Tue Jul 01 04:32:23 EDT 2025 Thu Apr 24 23:04:30 EDT 2025 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 7 |
| Keywords | Plasmid Microbiological investigation Typing Genotype In silico Diagnosis Detection |
| Language | English |
| License | CC BY 4.0 Copyright © 2014, American Society for Microbiology. All Rights Reserved. The authors have paid a fee to allow immediate free access to this article. |
| LinkModel | OpenURL |
| MergedId | FETCHMERGED-LOGICAL-a481t-3f3076eabebcffc32206eff92e55f7cf907c4804355ee381258f81330b3785863 |
| Notes | ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 23 ObjectType-Article-1 ObjectType-Feature-2 |
| OpenAccessLink | https://journals.asm.org/doi/10.1128/AAC.02412-14 |
| PMID | 24777092 |
| PQID | 1547866238 |
| PQPubID | 23462 |
| PageCount | 9 |
| ParticipantIDs | pubmedcentral_primary_oai_pubmedcentral_nih_gov_4068535 proquest_miscellaneous_1549631277 proquest_miscellaneous_1547866238 asm2_journals_10_1128_AAC_02412_14 pubmed_primary_24777092 pascalfrancis_primary_28577247 crossref_citationtrail_10_1128_AAC_02412_14 crossref_primary_10_1128_AAC_02412_14 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | 2014-07-01 |
| PublicationDateYYYYMMDD | 2014-07-01 |
| PublicationDate_xml | – month: 07 year: 2014 text: 2014-07-01 day: 01 |
| PublicationDecade | 2010 |
| PublicationPlace | Washington, DC |
| PublicationPlace_xml | – name: Washington, DC – name: United States – name: 1752 N St., N.W., Washington, DC |
| PublicationTitle | Antimicrobial agents and chemotherapy |
| PublicationTitleAbbrev | Antimicrob Agents Chemother |
| PublicationTitleAlternate | Antimicrob Agents Chemother |
| PublicationYear | 2014 |
| Publisher | American Society for Microbiology |
| Publisher_xml | – name: American Society for Microbiology |
| References | e_1_3_3_17_2 e_1_3_3_16_2 e_1_3_3_19_2 e_1_3_3_18_2 e_1_3_3_13_2 e_1_3_3_36_2 e_1_3_3_12_2 e_1_3_3_15_2 e_1_3_3_14_2 e_1_3_3_35_2 e_1_3_3_32_2 e_1_3_3_33_2 e_1_3_3_11_2 e_1_3_3_30_2 e_1_3_3_10_2 e_1_3_3_31_2 DANMAP (e_1_3_3_34_2) 2012 e_1_3_3_6_2 e_1_3_3_5_2 e_1_3_3_8_2 e_1_3_3_7_2 e_1_3_3_28_2 e_1_3_3_9_2 e_1_3_3_27_2 e_1_3_3_29_2 e_1_3_3_24_2 e_1_3_3_23_2 e_1_3_3_26_2 e_1_3_3_25_2 e_1_3_3_2_2 e_1_3_3_20_2 e_1_3_3_4_2 e_1_3_3_22_2 e_1_3_3_3_2 e_1_3_3_21_2 16716633 - Microbes Infect. 2006 Jun;8(7):1923-30 21653604 - J Antimicrob Chemother. 2011 Sep;66(9):1987-91 22238442 - J Clin Microbiol. 2012 Apr;50(4):1355-61 22792321 - PLoS One. 2012;7(7):e40438 10773089 - Nucleic Acids Res. 2000 May 15;28(10):2177-86 21109532 - Nucleic Acids Res. 2011 Jan;39(Database issue):D225-9 5002028 - Nature. 1971 Nov 26;234(5326):222-3 15328093 - Antimicrob Agents Chemother. 2004 Sep;48(9):3332-7 19001452 - J Antimicrob Chemother. 2009 Feb;63(2):274-81 21470454 - Emerg Infect Dis. 2011 Apr;17(4):645-52 21746951 - Antimicrob Agents Chemother. 2011 Sep;55(9):4224-9 18367460 - J Antimicrob Chemother. 2008 Jun;61(6):1229-33 22782487 - J Antimicrob Chemother. 2012 Nov;67(11):2640-4 22511638 - J Antimicrob Chemother. 2012 Jul;67(7):1645-50 19015365 - Antimicrob Agents Chemother. 2009 Feb;53(2):716-27 20935300 - J Antimicrob Chemother. 2010 Dec;65(12):2518-29 23233485 - J Antimicrob Chemother. 2013 Apr;68(4):771-7 22969080 - J Antimicrob Chemother. 2013 Jan;68(1):34-9 22123704 - Antimicrob Agents Chemother. 2012 Feb;56(2):783-6 22252815 - Antimicrob Agents Chemother. 2012 Apr;56(4):2143-5 22511964 - PLoS One. 2012;7(4):e34752 22470007 - Plasmid. 2012 Jul;68(1):43-50 20356905 - J Antimicrob Chemother. 2010 Jun;65(6):1155-61 3980081 - Infect Immun. 1985 Apr;48(1):175-82 3054468 - Microbiol Rev. 1988 Sep;52(3):375-95 23060365 - J Antimicrob Chemother. 2013 Feb;68(2):333-9 23800906 - J Antimicrob Chemother. 2013 Nov;68(11):2482-6 22092700 - FEMS Microbiol Lett. 2012 Jan;326(1):76-82 23357767 - Antimicrob Agents Chemother. 2013 Apr;57(4):1965-7 19687243 - Antimicrob Agents Chemother. 2009 Oct;53(10):4472-82 20656680 - J Antimicrob Chemother. 2010 Oct;65(10):2070-5 15518875 - Plasmid. 2004 Nov;52(3):182-202 15935499 - J Microbiol Methods. 2005 Dec;63(3):219-28 21143983 - BMC Bioinformatics. 2010;11:595 Dolejska, M, Villa, L, Hasman, H, Hansen, L, Carattoli, A (B20) 2013; 68 Villa, L, García-Fernández, A, Fortini, D, Carattoli, A (B4) 2010; 65 Phan, MD, Kidgell, C, Nair, S, Holt, KE, Turner, AK, Hinds, J, Butcher, P, Cooke, FJ (B14) 2009; 53 Jolley, KA, Maiden, MC (B11) 2010; 11 García-Fernández, A, Chiaretto, G, Bertini, A, Villa, L, Fortini, D, Ricci, A, Carattoli, A (B12) 2008; 61 Carattoli, A, Villa, L, Poirel, L, Bonnin, RA, Nordmann, P (B24) 2012; 56 Villa, L, Carattoli, A, Nordmann, P, Carta, C, Poirel, L (B17) 2013; 57 Sherburne, CK, Lawley, TD, Gilmour, MW, Blattner, FR, Burland, V, Grotbeck, E, Rose, DJ, Taylor, DE (B27) 2000; 28 García-Fernández, A, Carattoli, A (B7) 2010; 65 Couturier, M, Bex, F, Bergquist, PL, Maas, WK (B1) 1988; 52 Dolejska, M, Villa, L, Poirel, L, Nordmann, P, Carattoli, A (B8) 2013; 68 Alvarado, A, Garcillán-Barcia, MP, de la Cruz, F (B10) 2012; 7 (B33) 2012 Bonnin, RA, Poirel, L, Carattoli, A, Nordmann, P (B22) 2012; 7 Poirel, L, Bonnin, RA, Nordmann, P (B29) 2011; 55 Hansen, LH, Johannesen, E, Burmolle, M, Sorensen, AH, Sorensen, SJ (B30) 2004; 48 Helmuth, R, Stephan, R, Bunge, C, Hoog, B, Steinbeck, A, Bulling, E (B35) 1985; 48 Johnson, TJ, Bielak, EM, Fortini, D, Hansen, LH, Hasman, H, Debroy, C, Nolan, LK, Carattoli, A (B9) 2012; 68 Miriagou, V, Carattoli, A, Fanning, S (B34) 2006; 8 Gilmour, MW, Thomson, NR, Sanders, M, Parkhill, J, Taylor, DE (B28) 2004; 52 Woodford, N, Carattoli, A, Karisik, E, Underwood, A, Ellington, MJ, Livermore, DM (B21) 2009; 53 García-Fernández, A, Villa, L, Carta, C, Venditti, C, Giordano, A, Venditti, M, Mancini, C, Carattoli, A (B19) 2012; 56 Zankari, E, Hasman, H, Kaas, RS, Seyfarth, AM, Agersø, Y, Lund, O, Larsen, MV, Aarestrup, FM (B25) 2013; 68 Smorawinska, M, Szuplewska, M, Zaleski, P, Wawrzyniak, P, Maj, A, Plucienniczak, A, Bartosik, D (B32) 2012; 326 Cottell, JL, Webber, MA, Coldham, NG, Taylor, DL, Cerdeño-Tárraga, AM, Hauser, H, Thomson, NR, Woodward, MJ, Piddock, LJ (B26) 2011; 17 Datta, N, Hedges, RW (B3) 1971; 234 Marchler-Bauer, A, Lu, S, Anderson, JB, Chitsaz, F, Derbyshire, MK, DeWeese-Scott, C, Fong, JH, Geer, LY, Geer, RC, Gonzales, NR, Gwadz, M, Hurwitz, DI, Jackson, JD, Ke, Z, Lanczycki, CJ, Lu, F, Marchler, GH, Mullokandov, M, Omelchenko, MV, Robertson, CL, Song, JS, Thanki, N, Yamashita, RA, Zhang, D, Zhang, N, Zheng, C, Bryant, SH (B31) 2011; 39 Carattoli, A, Aschbacher, R, March, A, Larcher, C, Livermore, DM, Woodford, N (B23) 2010; 65 García-Fernández, A, Fortini, D, Veldman, K, Mevius, D, Carattoli, A (B6) 2009; 63 Carattoli, A, Bertini, A, Villa, L, Falbo, V, Hopkins, KL, Threlfall, J (B2) 2005; 63 García-Fernández, A, Villa, L, Moodley, A, Hasman, H, Miriagou, V, Guardabassi, L, Carattoli, A (B13) 2011; 66 Villa, L, Poirel, L, Nordmann, P, Carta, C, Carattoli, A (B5) 2012; 67 Larsen, MV, Cosentino, S, Rasmussen, S, Friis, C, Hasman, H, Marvig, RL, Jelsbak, L, Sicheritz-Pontén, T, Ussery, DW, Aarestrup, FM, Lund, O (B16) 2012; 50 Zankari, E, Hasman, H, Cosentino, S, Vestergaard, M, Rasmussen, S, Lund, O, Aarestrup, FM, Larsen, MV (B15) 2012; 67 Villa, L, Capone, A, Fortini, D, Dolejska, M, Rodríguez, I, Taglietti, F, De Paolis, P, Petrosillo, N, Carattoli, A (B18) 2013; 68 |
| References_xml | – ident: e_1_3_3_3_2 doi: 10.1016/j.mimet.2005.03.018 – ident: e_1_3_3_18_2 doi: 10.1128/AAC.01297-12 – ident: e_1_3_3_31_2 doi: 10.1128/AAC.48.9.3332-3337.2004 – ident: e_1_3_3_19_2 doi: 10.1093/jac/dkt235 – ident: e_1_3_3_4_2 doi: 10.1038/234222a0 – ident: e_1_3_3_5_2 doi: 10.1093/jac/dkq347 – ident: e_1_3_3_8_2 doi: 10.1093/jac/dkq101 – ident: e_1_3_3_24_2 doi: 10.1093/jac/dkq269 – ident: e_1_3_3_6_2 doi: 10.1093/jac/dks114 – ident: e_1_3_3_12_2 doi: 10.1186/1471-2105-11-595 – ident: e_1_3_3_15_2 doi: 10.1128/AAC.00645-08 – ident: e_1_3_3_21_2 doi: 10.1093/jac/dks387 – ident: e_1_3_3_2_2 doi: 10.1128/mr.52.3.375-395.1988 – ident: e_1_3_3_25_2 doi: 10.1128/AAC.05116-11 – ident: e_1_3_3_29_2 doi: 10.1016/j.plasmid.2004.06.006 – ident: e_1_3_3_30_2 doi: 10.1128/AAC.00165-11 – year: 2012 ident: e_1_3_3_34_2 publication-title: DANMAP 2011—use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals foods and humans in Denmark. 2012 – ident: e_1_3_3_36_2 doi: 10.1128/iai.48.1.175-182.1985 – ident: e_1_3_3_35_2 doi: 10.1016/j.micinf.2005.12.027 – ident: e_1_3_3_14_2 doi: 10.1093/jac/dkr225 – ident: e_1_3_3_23_2 doi: 10.1371/journal.pone.0034752 – ident: e_1_3_3_10_2 doi: 10.1016/j.plasmid.2012.03.001 – ident: e_1_3_3_22_2 doi: 10.1128/AAC.00688-09 – ident: e_1_3_3_32_2 doi: 10.1093/nar/gkq1189 – ident: e_1_3_3_20_2 doi: 10.1128/AAC.05308-11 – ident: e_1_3_3_7_2 doi: 10.1093/jac/dkn470 – ident: e_1_3_3_27_2 doi: 10.3201/eid1704.101009 – ident: e_1_3_3_9_2 doi: 10.1093/jac/dks357 – ident: e_1_3_3_26_2 doi: 10.1093/jac/dks496 – ident: e_1_3_3_11_2 doi: 10.1371/journal.pone.0040438 – ident: e_1_3_3_16_2 doi: 10.1093/jac/dks261 – ident: e_1_3_3_28_2 doi: 10.1093/nar/28.10.2177 – ident: e_1_3_3_17_2 doi: 10.1128/JCM.06094-11 – ident: e_1_3_3_13_2 doi: 10.1093/jac/dkn131 – ident: e_1_3_3_33_2 doi: 10.1111/j.1574-6968.2011.02432.x – reference: 21746951 - Antimicrob Agents Chemother. 2011 Sep;55(9):4224-9 – reference: 10773089 - Nucleic Acids Res. 2000 May 15;28(10):2177-86 – reference: 23233485 - J Antimicrob Chemother. 2013 Apr;68(4):771-7 – reference: 19001452 - J Antimicrob Chemother. 2009 Feb;63(2):274-81 – reference: 23800906 - J Antimicrob Chemother. 2013 Nov;68(11):2482-6 – reference: 23060365 - J Antimicrob Chemother. 2013 Feb;68(2):333-9 – reference: 15935499 - J Microbiol Methods. 2005 Dec;63(3):219-28 – reference: 16716633 - Microbes Infect. 2006 Jun;8(7):1923-30 – reference: 3054468 - Microbiol Rev. 1988 Sep;52(3):375-95 – reference: 22511638 - J Antimicrob Chemother. 2012 Jul;67(7):1645-50 – reference: 19687243 - Antimicrob Agents Chemother. 2009 Oct;53(10):4472-82 – reference: 20656680 - J Antimicrob Chemother. 2010 Oct;65(10):2070-5 – reference: 21470454 - Emerg Infect Dis. 2011 Apr;17(4):645-52 – reference: 5002028 - Nature. 1971 Nov 26;234(5326):222-3 – reference: 15328093 - Antimicrob Agents Chemother. 2004 Sep;48(9):3332-7 – reference: 23357767 - Antimicrob Agents Chemother. 2013 Apr;57(4):1965-7 – reference: 22792321 - PLoS One. 2012;7(7):e40438 – reference: 22969080 - J Antimicrob Chemother. 2013 Jan;68(1):34-9 – reference: 19015365 - Antimicrob Agents Chemother. 2009 Feb;53(2):716-27 – reference: 20356905 - J Antimicrob Chemother. 2010 Jun;65(6):1155-61 – reference: 15518875 - Plasmid. 2004 Nov;52(3):182-202 – reference: 3980081 - Infect Immun. 1985 Apr;48(1):175-82 – reference: 22470007 - Plasmid. 2012 Jul;68(1):43-50 – reference: 22511964 - PLoS One. 2012;7(4):e34752 – reference: 21143983 - BMC Bioinformatics. 2010;11:595 – reference: 20935300 - J Antimicrob Chemother. 2010 Dec;65(12):2518-29 – reference: 22123704 - Antimicrob Agents Chemother. 2012 Feb;56(2):783-6 – reference: 22238442 - J Clin Microbiol. 2012 Apr;50(4):1355-61 – reference: 22782487 - J Antimicrob Chemother. 2012 Nov;67(11):2640-4 – reference: 22252815 - Antimicrob Agents Chemother. 2012 Apr;56(4):2143-5 – reference: 21109532 - Nucleic Acids Res. 2011 Jan;39(Database issue):D225-9 – reference: 21653604 - J Antimicrob Chemother. 2011 Sep;66(9):1987-91 – reference: 18367460 - J Antimicrob Chemother. 2008 Jun;61(6):1229-33 – reference: 22092700 - FEMS Microbiol Lett. 2012 Jan;326(1):76-82 – volume: 67 start-page: 1645 year: 2012 end-page: 1650 ident: B5 article-title: Complete sequencing of an IncH plasmid carrying the blaNDM-1, blaCTX-M-15 and qnrB1 genes publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dks114 – volume: 326 start-page: 76 year: 2012 end-page: 82 ident: B32 article-title: Mobilizable narrow host range plasmids as natural suicide vectors enabling horizontal gene transfer among distantly related bacterial species publication-title: FEMS Microbiol. Lett doi: 10.1111/j.1574-6968.2011.02432.x – volume: 7 start-page: e40438 year: 2012 ident: B10 article-title: A degenerate primer MOB typing (DPMT) method to classify gamma-proteobacterial plasmids in clinical and environmental settings publication-title: PLoS One doi: 10.1371/journal.pone.0040438 – volume: 7 start-page: e34752 year: 2012 ident: B22 article-title: Characterization of an IncFII plasmid encoding NDM-1 from Escherichia coli ST131 publication-title: PLoS One doi: 10.1371/journal.pone.0034752 – volume: 65 start-page: 2518 year: 2010 end-page: 2529 ident: B4 article-title: Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dkq347 – volume: 57 start-page: 1965 year: 2013 end-page: 1967 ident: B17 article-title: Complete sequence of the IncT-type plasmid pT-OXA-181 carrying the blaOXA-181 carbapenemase gene from Citrobacter freundii publication-title: Antimicrob. Agents Chemother doi: 10.1128/AAC.01297-12 – volume: 56 start-page: 2143 year: 2012 end-page: 2145 ident: B19 article-title: Klebsiella pneumoniae ST258 producing KPC-3 identified in Italy carries novel plasmids and OmpK36/OmpK35 porin variants publication-title: Antimicrob. Agents Chemother doi: 10.1128/AAC.05308-11 – volume: 68 start-page: 2482 year: 2013 end-page: 2486 ident: B18 article-title: Reversion to susceptibility of a carbapenem-resistant clinical isolate of Klebsiella pneumoniae producing KPC-3 publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dkt235 – year: 2012 ident: B33 publication-title: DANMAP 2011—use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals foods and humans in Denmark. 2012 ;http://www.danmap.org/Downloads/∼/media/Projekt%20sites/Danmap/DANMAP%20reports/Danmap_2011.ashx – volume: 65 start-page: 1155 year: 2010 end-page: 1161 ident: B7 article-title: Plasmid double locus sequence typing for IncHI2 plasmids, a subtyping scheme for the characterization of IncHI2 plasmids carrying extended-spectrum beta-lactamase and quinolone resistance genes publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dkq101 – volume: 17 start-page: 645 year: 2011 end-page: 652 ident: B26 article-title: Complete sequence and molecular epidemiology of IncK epidemic plasmid encoding blaCTX-M-14 publication-title: Emerg. Infect. Dis doi: 10.3201/eid1704.101009 – volume: 63 start-page: 274 year: 2009 end-page: 281 ident: B6 article-title: Characterization of plasmids harbouring qnrS1, qnrB2 and qnrB19 genes in Salmonella publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dkn470 – volume: 53 start-page: 4472 year: 2009 end-page: 4482 ident: B21 article-title: Complete nucleotide sequences of plasmids pEK204, pEK499, and pEK516, encoding CTX-M enzymes in three major Escherichia coli lineages from the United Kingdom, all belonging to the international O25:H4-ST131 clone publication-title: Antimicrob. Agents Chemother doi: 10.1128/AAC.00688-09 – volume: 48 start-page: 3332 year: 2004 end-page: 3337 ident: B30 article-title: Plasmid-encoded multidrug efflux pump conferring resistance to olaquindox in Escherichia coli publication-title: Antimicrob. Agents Chemother doi: 10.1128/AAC.48.9.3332-3337.2004 – volume: 67 start-page: 2640 year: 2012 end-page: 2644 ident: B15 article-title: Identification of acquired antimicrobial resistance genes publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dks261 – volume: 55 start-page: 4224 year: 2011 end-page: 4229 ident: B29 article-title: Analysis of the resistome of a multidrug-resistant NDM-1-producing Escherichia coli strain by high-throughput genome sequencing publication-title: Antimicrob. Agents Chemother doi: 10.1128/AAC.00165-11 – volume: 52 start-page: 375 year: 1988 end-page: 395 ident: B1 article-title: Identification and classification of bacterial plasmids publication-title: Microbiol. Rev – volume: 65 start-page: 2070 year: 2010 end-page: 2075 ident: B23 article-title: Complete nucleotide sequence of the IncN plasmid pKOX105 encoding VIM-1, QnrS1 and SHV-12 proteins in Enterobacteriaceae from Bolzano, Italy compared with IncN plasmids encoding KPC enzymes in the USA publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dkq269 – volume: 8 start-page: 1923 year: 2006 end-page: 1930 ident: B34 article-title: Antimicrobial resistance islands: resistance gene clusters in Salmonella chromosome and plasmids publication-title: Microbes Infect doi: 10.1016/j.micinf.2005.12.027 – volume: 39 start-page: D225 year: 2011 end-page: D229 ident: B31 article-title: CDD: a Conserved Domain Database for the functional annotation of proteins publication-title: Nucleic Acids Res doi: 10.1093/nar/gkq1189 – volume: 68 start-page: 43 year: 2012 end-page: 50 ident: B9 article-title: Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae publication-title: Plasmid doi: 10.1016/j.plasmid.2012.03.001 – volume: 68 start-page: 771 year: 2013 end-page: 777 ident: B25 article-title: Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dks496 – volume: 50 start-page: 1355 year: 2012 end-page: 1361 ident: B16 article-title: Multilocus sequence typing of total-genome-sequenced bacteria publication-title: J. Clin. Microbiol doi: 10.1128/JCM.06094-11 – volume: 11 start-page: 595 year: 2010 ident: B11 article-title: BIGSdb: scalable analysis of bacterial genome variation at the population level publication-title: BMC Bioinformatics doi: 10.1186/1471-2105-11-595 – volume: 63 start-page: 219 year: 2005 end-page: 228 ident: B2 article-title: Identification of plasmids by PCR-based replicon typing publication-title: J. Microbiol. Methods doi: 10.1016/j.mimet.2005.03.018 – volume: 28 start-page: 2177 year: 2000 end-page: 2186 ident: B27 article-title: The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella Typhi that is temperature sensitive for transfer publication-title: Nucleic Acids Res doi: 10.1093/nar/28.10.2177 – volume: 234 start-page: 222 year: 1971 end-page: 223 ident: B3 article-title: Compatibility groups among fi− R factors publication-title: Nature doi: 10.1038/234222a0 – volume: 66 start-page: 1987 year: 2011 end-page: 1991 ident: B13 article-title: Multilocus sequence typing of IncN plasmids publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dkr225 – volume: 61 start-page: 1229 year: 2008 end-page: 1233 ident: B12 article-title: Multilocus sequence typing of IncI1 plasmids carrying extended-spectrum beta-lactamases in Escherichia coli and Salmonella of human and animal origin publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dkn131 – volume: 53 start-page: 716 year: 2009 end-page: 727 ident: B14 article-title: Variation in Salmonella enterica serovar typhi IncHI1 plasmids during the global spread of resistant typhoid fever publication-title: Antimicrob. Agents Chemother doi: 10.1128/AAC.00645-08 – volume: 52 start-page: 182 year: 2004 end-page: 202 ident: B28 article-title: The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics publication-title: Plasmid doi: 10.1016/j.plasmid.2004.06.006 – volume: 68 start-page: 333 year: 2013 end-page: 339 ident: B20 article-title: Characterization of IncN plasmids carrying blaCTX-M-1 and qnr genes in Escherichia coli and Salmonella from animals, the environment and humans publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dks387 – volume: 56 start-page: 783 year: 2012 end-page: 786 ident: B24 article-title: Evolution of IncA/C blaCMY-2-carrying plasmids by acquisition of the blaNDM-1 carbapenemase gene publication-title: Antimicrob. Agents Chemother doi: 10.1128/AAC.05116-11 – volume: 48 start-page: 175 year: 1985 end-page: 182 ident: B35 article-title: Epidemiology of virulence-associated plasmids and outer membrane protein patterns within seven common Salmonella serotypes publication-title: Infect. Immun – volume: 68 start-page: 34 year: 2013 end-page: 39 ident: B8 article-title: Complete sequencing of an IncHI1 plasmid encoding the carbapenemase NDM-1, the ArmA 16S RNA methylase and a resistance-nodulation-cell division/multidrug efflux pump publication-title: J. Antimicrob. Chemother doi: 10.1093/jac/dks357 |
| SSID | ssj0006590 |
| Score | 2.661806 |
| Snippet | In the work presented here, we designed and developed two easy-to-use Web tools for
in silico
detection and characterization of whole-genome sequence (WGS) and... In the work presented here, we designed and developed two easy-to-use Web tools for in silico detection and characterization of whole-genome sequence (WGS) and... |
| SourceID | pubmedcentral proquest asm2 pubmed pascalfrancis crossref |
| SourceType | Open Access Repository Aggregation Database Index Database Enrichment Source |
| StartPage | 3895 |
| SubjectTerms | Antibiotics. Antiinfectious agents. Antiparasitic agents Biological and medical sciences Computer Simulation Databases, Genetic Drug Resistance, Bacterial - genetics Enterobacteriaceae Enterobacteriaceae - genetics Epidemiology and Surveillance Genome, Bacterial Internet Medical sciences Multilocus Sequence Typing Multilocus Sequence Typing - methods Pharmacology. Drug treatments Plasmids Plasmids - genetics Replicon Reproducibility of Results Salmonella enterica Salmonella typhimurium |
| Title | In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/24777092 https://journals.asm.org/doi/10.1128/AAC.02412-14 https://www.proquest.com/docview/1547866238 https://www.proquest.com/docview/1549631277 https://pubmed.ncbi.nlm.nih.gov/PMC4068535 |
| Volume | 58 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LbxMxELZCEQgJIQgUwqMyCHpJN2S9u7b3GEUtKUpKDymquKz2YdOIdFM1m0P4F_xjxo99BKWocFklzsSxMuN52PPNIPSeUZZ5qU9Vplri-EHad-JEEIeENFbQEiKZwjtPTujozP98Hpy3Wr8aWUurIumlP7fiSv6HqzAGfFUo2X_gbDUpDMBr4C88gcPwvBWPj2FvzubAS1AbhbBNv_OsC8GlTWY-Bef4cpYtuyt9JmDfHqkaiSZ50o50NRAXDNtqCerDZFfbaZru6yAvZpczXbtJ1Rj4ruFxGhl3IS4tlqs6ox-qquLFwuCvB3PVayXPrisz8C3Of8QG535YDX5SrY1iZ-N0e7C6XtRfG0MkblTlRGUpdb8u5lmybh5euH6V6FopZEodn5sOxD1hdLAqcUoD0-i2VNIBbwgja2hccLiChvX2Ql0yYYtlIArtMBgMe-CVuMRx_doClrf-J1-io7PxOJoenk_voLuEMX3zPxrVERWsy6Ca7LpLLAXhH5tzg4EH7pENZ-fhVbyEfSdNw5RtEc2fibkNT2f6GD2yIQoeGHl7gloib6N7pmnpuo3uT2w6Rhvtn5rC5-sDPK1xfMsDvI9P65Lo66dIHOfYSCquJBUDg7ERMbyQuJRUrCUVb0iqJrUjuJZUXEqqneYZOjs6nA5Hjm3w4cQ-dwvHk2BhqADlkKRSpmBb-lRIGRIRBJKlMuyzVP3J4BMLAa4lCbjkruf1E4_xgFNvF-3ki1y8QJhI6WbM44lHhU9TGfPMpSJ0vTQJaSKyDnqnGBLZ3buMdPBLeARcizTXIAjuoG7Jrii1JfJVp5b5DdQfKuorUxrmBrq9Dc5XxIQHENv6rIPelqIQgXJXN3ZxLhYrWKSqtkchQuF_pQEj6oKwdtBzIz71L_iMsX5IOohtCFZFoIrLb36Szy50kXlw9MGTD17eYm2v0IN6b79GO8X1SrwBV71I9vTm-Q26f-wb |
| linkProvider | ABC ChemistRy |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=In+Silico+Detection+and+Typing+of+Plasmids+using+PlasmidFinder+and+Plasmid+Multilocus+Sequence+Typing&rft.jtitle=Antimicrobial+agents+and+chemotherapy&rft.au=Carattoli%2C+Alessandra&rft.au=Zankari%2C+Ea&rft.au=Garcia-Fernandez%2C+Aurora&rft.au=Larsen%2C+Mette+Voldby&rft.date=2014-07-01&rft.issn=0066-4804&rft.eissn=1098-6596&rft.volume=58&rft.issue=7&rft.spage=3895&rft.epage=3903&rft_id=info:doi/10.1128%2FAAC.02412-14&rft.externalDBID=NO_FULL_TEXT |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0066-4804&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0066-4804&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0066-4804&client=summon |