A large column analog experiment of stable isotope variations during reactive transport: II. Carbon mass balance, microbial community structure and predation
Here we report a combined analysis of carbon mass balance based on isotopic labeling and microbiological characterization during organic carbon stimulated bioreduction of a subsurface sediment in a large laboratory column experimental system. This combination of approaches allows quantification of b...
Saved in:
Published in | Geochimica et cosmochimica acta Vol. 124; pp. 394 - 409 |
---|---|
Main Authors | , , , , , , , |
Format | Journal Article |
Language | English |
Published |
Elsevier Ltd
01.01.2014
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Here we report a combined analysis of carbon mass balance based on isotopic labeling and microbiological characterization during organic carbon stimulated bioreduction of a subsurface sediment in a large laboratory column experimental system. This combination of approaches allows quantification of both the cycling of carbon through multiple redox pathways and the associated spatial and temporal evolution of bacterial communities in response to this nutrient source. Carbon isotope mass balance facilitated by the use of 13C-labeled acetate as the electron donor showed evidence for a net loss of sediment organic carbon over the course of the amendment experiment. Furthermore, these data clearly demonstrated a source of isotopically labeled inorganic carbon that was not attributable to primary metabolism by acetate-oxidizing microorganisms. Fluid samples collected weekly over the duration of the 43-day amendment at <20cm intervals along the flow path were analyzed for microbial composition by pyrosequencing of ribosomal RNA genes. The microbial community composition was transient, with distinct occurrences of Azoarcus, Geobacter and multiple sulfate reducing species over the course of the experiment. In combination with DNA sequencing data, the anomalous carbon cycling process is shown to occur exclusively during the period of predominant Geobacter species growth. Pyrosequencing indicated, and targeted cloning and sequencing confirmed the presence of several bacteriovorous protozoa, including species of the Breviata, Planococcus and Euplotes genera. Cloning and qPCR analysis demonstrated that Euplotes species were most abundant and displayed a growth trajectory that closely followed that of the Geobacter population. These results suggest a previously undocumented secondary turnover of biomass carbon related to protozoan grazing that was not sufficiently prevalent to be observed in bulk concentrations of carbon species in the system, but was clearly identified in the partitioning of carbon isotopes. This study demonstrates evidence for predator-prey relationships that impact subsurface microbial community dynamics and provides a novel indication of the impact of this relationship on the flux of carbon through a system via the microbial biomass pool. Overall, our approach provides high temporal and spatial sampling resolution at field relevant flow rates, while minimizing effects of mixing and transverse dispersion. The result is a quantitative carbon budget accounting for a diversity of processes that should be considered for inclusion in reactive transport models that aim to predict carbon turnover, nutrient flux, and redox reactions in natural and stimulated subsurface systems. |
---|---|
AbstractList | Here we report a combined analysis of carbon mass balance based on isotopic labeling and microbiological characterization during organic carbon stimulated bioreduction of a subsurface sediment in a large laboratory column experimental system. This combination of approaches allows quantification of both the cycling of carbon through multiple redox pathways and the associated spatial and temporal evolution of bacterial communities in response to this nutrient source. Carbon isotope mass balance facilitated by the use of 13C-labeled acetate as the electron donor showed evidence for a net loss of sediment organic carbon over the course of the amendment experiment. Furthermore, these data clearly demonstrated a source of isotopically labeled inorganic carbon that was not attributable to primary metabolism by acetate-oxidizing microorganisms. Fluid samples collected weekly over the duration of the 43-day amendment at <20 cm intervals along the flow path were analyzed for microbial composition by pyrosequencing of ribosomal RNA genes. The microbial community composition was transient, with distinct occurrences of Azoarcus, Geobacter and multiple sulfate reducing species over the course of the experiment. In combination with DNA sequencing data, the anomalous carbon cycling process is shown to occur exclusively during the period of predominant Geobacter species growth. Pyrosequencing indicated, and targeted cloning and sequencing confirmed the presence of several bacteriovorous protozoa, including species of the Breviata, Planococcus and Euplotes genera. Cloning and qPCR analysis demonstrated that Euplotes species were most abundant and displayed a growth trajectory that closely followed that of the Geobacter population. These results suggest a previously undocumented secondary turnover of biomass carbon related to protozoan grazing that was not sufficiently prevalent to be observed in bulk concentrations of carbon species in the system, but was clearly identified in the partitioning of carbon isotopes. This study demonstrates evidence for predator-prey relationships that impact subsurface microbial community dynamics and provides a novel indication of the impact of this relationship on the flux of carbon through a system via the microbial biomass pool. Overall, our approach provides high temporal and spatial sampling resolution at field relevant flow rates, while minimizing effects of mixing and transverse dispersion. The result is a quantitative carbon budget accounting for a diversity of processes that should be considered for inclusion in reactive transport models that aim to predict carbon turnover, nutrient flux, and redox reactions in natural and stimulated subsurface systems. Here we report a combined analysis of carbon mass balance based on isotopic labeling and microbiological characterization during organic carbon stimulated bioreduction of a subsurface sediment in a large laboratory column experimental system. This combination of approaches allows quantification of both the cycling of carbon through multiple redox pathways and the associated spatial and temporal evolution of bacterial communities in response to this nutrient source. Carbon isotope mass balance facilitated by the use of 13C-labeled acetate as the electron donor showed evidence for a net loss of sediment organic carbon over the course of the amendment experiment. Furthermore, these data clearly demonstrated a source of isotopically labeled inorganic carbon that was not attributable to primary metabolism by acetate-oxidizing microorganisms. Fluid samples collected weekly over the duration of the 43-day amendment at <20cm intervals along the flow path were analyzed for microbial composition by pyrosequencing of ribosomal RNA genes. The microbial community composition was transient, with distinct occurrences of Azoarcus, Geobacter and multiple sulfate reducing species over the course of the experiment. In combination with DNA sequencing data, the anomalous carbon cycling process is shown to occur exclusively during the period of predominant Geobacter species growth. Pyrosequencing indicated, and targeted cloning and sequencing confirmed the presence of several bacteriovorous protozoa, including species of the Breviata, Planococcus and Euplotes genera. Cloning and qPCR analysis demonstrated that Euplotes species were most abundant and displayed a growth trajectory that closely followed that of the Geobacter population. These results suggest a previously undocumented secondary turnover of biomass carbon related to protozoan grazing that was not sufficiently prevalent to be observed in bulk concentrations of carbon species in the system, but was clearly identified in the partitioning of carbon isotopes. This study demonstrates evidence for predator-prey relationships that impact subsurface microbial community dynamics and provides a novel indication of the impact of this relationship on the flux of carbon through a system via the microbial biomass pool. Overall, our approach provides high temporal and spatial sampling resolution at field relevant flow rates, while minimizing effects of mixing and transverse dispersion. The result is a quantitative carbon budget accounting for a diversity of processes that should be considered for inclusion in reactive transport models that aim to predict carbon turnover, nutrient flux, and redox reactions in natural and stimulated subsurface systems. |
Author | Wu, Cindy Brodie, Eoin L. Bill, Markus Conrad, Mark E. Lim, HsiaoChien Williams, Kenneth H. Druhan, Jennifer L. DePaolo, Donald J. |
Author_xml | – sequence: 1 givenname: Jennifer L. surname: Druhan fullname: Druhan, Jennifer L. email: jdruhan@stanford.edu organization: Department of Earth and Planetary Science, University of California Berkeley, Berkeley, CA 94720, United States – sequence: 2 givenname: Markus surname: Bill fullname: Bill, Markus organization: Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States – sequence: 3 givenname: HsiaoChien surname: Lim fullname: Lim, HsiaoChien organization: Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States – sequence: 4 givenname: Cindy surname: Wu fullname: Wu, Cindy organization: Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States – sequence: 5 givenname: Mark E. surname: Conrad fullname: Conrad, Mark E. organization: Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States – sequence: 6 givenname: Kenneth H. surname: Williams fullname: Williams, Kenneth H. organization: Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States – sequence: 7 givenname: Donald J. surname: DePaolo fullname: DePaolo, Donald J. organization: Department of Earth and Planetary Science, University of California Berkeley, Berkeley, CA 94720, United States – sequence: 8 givenname: Eoin L. surname: Brodie fullname: Brodie, Eoin L. organization: Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States |
BookMark | eNqFUbuO1DAUtdAiMfv4gO1cUpDgRxI7UK1GPEZaiQZq68a5GXmU2MF2RuzH8K_rZaihus0597yuyZUPHgm556zmjHfvT_XRQi0YlzXTNZPdK7LjWomqb6W8IjtWQJViUr0h1ymdGGOqbdmO_H6gM8QjUhvmbfEUPMzhSPHXitEt6DMNE00ZhhmpSyGHFekZooPsgk903KLzRxoRbHZnpDmCT2uI-QM9HGq6hzgETxdIiQ4wg7f4ji7OxjA4mIvmsmze5aeiEDebt4jFwEjXiOMfgVvyeoI54d3fe0N-fP70ff-1evz25bB_eKxA6i5Xgxw720iluhGY4q2WgttpQqlVL7TocBB9J0YuoR2wEa0YVKO11D02vRWqlzfk7eXvGsPPDVM2i0sW5-IYw5YMV6xXPVelwP9CW9ZJ3XRSFSi_QEvelCJOZi2dQnwynJmX1czJlNXMy2qGaVNWK5yPFw6WuGeH0STrsPQ2uog2mzG4f7CfAbFwo2M |
CitedBy_id | crossref_primary_10_1007_s10596_020_09937_6 crossref_primary_10_1016_j_gca_2018_08_047 crossref_primary_10_1007_s10596_020_09988_9 crossref_primary_10_1051_e3sconf_20199812004 crossref_primary_10_1016_j_chemgeo_2021_120143 crossref_primary_10_1130_G46442_1 crossref_primary_10_1080_01490451_2014_957615 crossref_primary_10_1007_s10533_016_0186_8 crossref_primary_10_1016_j_gca_2014_11_013 crossref_primary_10_1016_j_gca_2013_08_037 crossref_primary_10_1021_acs_energyfuels_9b01722 crossref_primary_10_1021_es503424z crossref_primary_10_1016_j_scitotenv_2017_11_039 |
Cites_doi | 10.1038/nrmicro2439 10.1111/j.1751-7915.2010.00194.x 10.1128/AEM.00062-07 10.1007/BF00172558 10.1007/s00374-008-0334-y 10.1016/j.jconhyd.2011.09.002 10.1038/nmeth.f.303 10.1016/j.tim.2005.05.009 10.1093/bioinformatics/btp636 10.1016/j.jconhyd.2009.10.006 10.1002/rem.21347 10.1021/es0110067 10.1016/j.jconhyd.2007.01.004 10.1007/s002489900125 10.1016/j.copbio.2012.10.008 10.1016/S0043-1354(98)00325-X 10.1038/ismej.2013.20 10.1034/j.1399-0039.1999.540410.x 10.1016/j.gca.2004.08.010 10.1038/nature06275 10.1016/j.gca.2007.11.039 10.1128/AEM.71.10.6308-6318.2005 10.1080/00986448608911380 10.1016/j.gca.2013.08.037 10.1016/j.jconhyd.2010.11.007 10.1016/j.gca.2009.07.019 10.1128/AEM.01795-12 10.1016/S0169-7722(99)00003-0 10.1016/S0169-7722(00)00158-3 10.1128/MMBR.64.1.69-114.2000 10.1016/S0009-2541(99)00092-3 10.1128/AEM.65.5.2143-2150.1999 10.1016/S0022-1694(98)00157-7 10.1016/j.jconhyd.2004.06.003 10.1021/es202792x 10.1038/nmeth.1184 10.1021/es900016v 10.1128/AEM.06528-11 10.1016/S0378-1097(04)00041-2 10.1128/AEM.68.5.2300-2306.2002 10.1093/nar/gkn879 10.1016/j.watres.2006.08.024 10.1128/AEM.00576-11 10.1021/es0504035 10.1021/es903535j 10.1038/nclimate1331 10.2136/sssaj2001.1853 10.1023/A:1008375213687 10.1016/j.apgeochem.2012.04.013 10.1021/es302016p 10.1111/geb.12029 10.1016/j.gca.2011.05.008 10.1021/es051218u 10.1128/AEM.01064-09 10.1021/es071960p 10.1021/es101029f 10.1016/S0273-1223(99)00267-X 10.1016/S0065-2164(06)61008-3 10.1093/bioinformatics/btq461 10.1128/AEM.50.2.243-248.1985 10.1890/09-1968.1 10.1021/es102893r 10.4319/lom.2008.6.254 10.1111/j.1751-7915.2009.00087.x 10.1016/S0003-2670(99)00670-4 10.1130/G30185A.1 10.1111/j.1574-6941.2012.01363.x 10.1128/AEM.69.10.5884-5891.2003 10.1007/s10021-006-9013-8 10.1128/AEM.60.8.2802-2810.1994 10.1016/j.cell.2009.09.033 10.1080/01490451.2010.520074 10.1139/cjm-44-7-623 |
ContentType | Journal Article |
Copyright | 2013 Elsevier Ltd |
Copyright_xml | – notice: 2013 Elsevier Ltd |
DBID | AAYXX CITATION 7T7 8FD C1K FR3 P64 H8D L7M |
DOI | 10.1016/j.gca.2013.08.036 |
DatabaseName | CrossRef Industrial and Applied Microbiology Abstracts (Microbiology A) Technology Research Database Environmental Sciences and Pollution Management Engineering Research Database Biotechnology and BioEngineering Abstracts Aerospace Database Advanced Technologies Database with Aerospace |
DatabaseTitle | CrossRef Engineering Research Database Technology Research Database Industrial and Applied Microbiology Abstracts (Microbiology A) Biotechnology and BioEngineering Abstracts Environmental Sciences and Pollution Management Aerospace Database Advanced Technologies Database with Aerospace |
DatabaseTitleList | Engineering Research Database Technology Research Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Geology |
EISSN | 1872-9533 |
EndPage | 409 |
ExternalDocumentID | 10_1016_j_gca_2013_08_036 S0016703713004882 |
GroupedDBID | --K --M -DZ -~X .~1 0R~ 1B1 1RT 1~. 1~5 4.4 457 4G. 5GY 5VS 7-5 71M 8P~ 9JN AABNK AACTN AAEDT AAEDW AAIAV AAIKJ AAKOC AALRI AAOAW AAQFI AAXUO ABFNM ABMAC ABPPZ ABQEM ABQYD ABXDB ABYKQ ACDAQ ACGFS ACLVX ACRLP ACSBN ADBBV ADEZE AEBSH AEKER AENEX AFKWA AFTJW AGHFR AGUBO AGYEJ AHHHB AIEXJ AIKHN AITUG AJBFU AJOXV ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ ATOGT AXJTR BKOJK BLXMC CS3 DU5 EBS EFJIC EFLBG EJD EO8 EO9 EP2 EP3 F5P FDB FIRID FNPLU FYGXN G-Q GBLVA HMA IHE IMUCA J1W KOM LY3 M41 MO0 N9A O-L O9- OAUVE OZT P-8 P-9 P2P PC. Q38 RIG RNS ROL RPZ SDF SDG SDP SEP SES SPC SSE SSZ T5K TN5 TWZ XSW ZMT ~02 ~G- 29H 6TJ 8WZ A6W AAQXK AAXKI AAYXX ABEFU ADIYS ADMUD AFJKZ AI. AKRWK ASPBG AVWKF AZFZN CITATION FEDTE FGOYB G-2 HVGLF HZ~ MVM OHT R2- SEW UQL VH1 VOH WUQ XJT XOL ZKB 7T7 8FD C1K FR3 P64 H8D L7M |
ID | FETCH-LOGICAL-a386t-b3d6c43776da07158321cffe38792826eb2962d13a5be4252b7488389e49c2793 |
IEDL.DBID | AIKHN |
ISSN | 0016-7037 |
IngestDate | Fri Aug 16 04:00:11 EDT 2024 Fri Aug 16 07:39:04 EDT 2024 Thu Sep 26 19:48:15 EDT 2024 Fri Feb 23 02:23:59 EST 2024 |
IsPeerReviewed | true |
IsScholarly | true |
Language | English |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-a386t-b3d6c43776da07158321cffe38792826eb2962d13a5be4252b7488389e49c2793 |
Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
PQID | 1506384637 |
PQPubID | 23462 |
PageCount | 16 |
ParticipantIDs | proquest_miscellaneous_1709791770 proquest_miscellaneous_1506384637 crossref_primary_10_1016_j_gca_2013_08_036 elsevier_sciencedirect_doi_10_1016_j_gca_2013_08_036 |
PublicationCentury | 2000 |
PublicationDate | 2014-01-01 2014-01-00 20140101 |
PublicationDateYYYYMMDD | 2014-01-01 |
PublicationDate_xml | – month: 01 year: 2014 text: 2014-01-01 day: 01 |
PublicationDecade | 2010 |
PublicationTitle | Geochimica et cosmochimica acta |
PublicationYear | 2014 |
Publisher | Elsevier Ltd |
Publisher_xml | – name: Elsevier Ltd |
References | Li, Steefel, Kowalsky, Englert, Hubbard (b0195) 2010; 112 Lindgren, Lindstrom (b0210) 1996; 22 Fontaine, Barot, Barre, Bdioui, Mary, Rumpel (b9015) 2007; 450 Conrad, Brodie, Radtke, Bill, Delwiche, Lee, Swift, Colwell (b9005) 2010; 44 N’Guessan, Vrionis, Resch, Long, Lovley (b0260) 2008; 42 Vrionis, Anderson, Ortiz-Bernad, O’Neill, Resch, Peacock, Dayvault, White, Long, Lovley (b0310) 2005; 71 Fang, Wilkins, Yabusaki, Lipton, Long (b0090) 2012; 78 Holmes, Finneran, O’Neil, Lovley (b0135) 2002; 68 Holmes, Giloteaux, Williams, Wrighton, Wilkins, Thompson, Roper, Long, Lovley (b0130) 2013; 7 Turner, Poles, Brown, Arguello, Madrigal, Navarrete (b0300) 1999; 54 Wang, Garrity, Tiedje, Cole (b0320) 2007; 73 Dale, Regnier, Knab, Jørgensen, Van Cappellen (b0055) 2008; 72 Mundle, Johnson, Lacrampe-Couloume, Perez-de-Mora, Duhamel, Edwards, McMaster, Cox, Revesz, Lollar (b0255) 2012; 46 Hunter, Wang, Van Cappellen (b0145) 1998; 209 Shi, Zwolinski, Schreiber, Bahr, Sewell, Hickey (b0280) 1999; 65 Fries, Zhou, Cheesanford, Tiedje (b0105) 1994; 60 Wang, Papenguth (b0325) 2001; 47 Druhan, Steefel, Molins, Williams, Conrad, DePaolo (b0070) 2012; 46 Wand, Vacca, Kuschk, Kruger, Kastner (b0315) 2007; 41 Miletto, Williams, N’Guessan, Lovley (b0250) 2011; 77 366–393. Chang, Long, Geyer, Peacock, Resch, Sublette, Pfiffner, Smithgall, Anderson, Vrionis, Stephen, Dayvault, Ortiz-Bernad, Lovley, White (b0045) 2005; 39 Hamady, Walker, Harris, Gold, Knight (b0110) 2008; 5 Druhan J.L., Steefel C.I., Conrad M.E., DePaolo D.J. (2014) A large column analog experiment of stable isotope variations during reactive transport: I. A comprehensive model of sulfur cycling and δ Kuban, Karlberg (b0180) 2000; 404 Williams, Bargar, Lloyd, Lovley (b0335) 2013; 24 Williams, Long, Davis, Wilkins, N’Guessan, Steefel, Yang, Newcomer, Spane, Kerkhof, McGuinness, Dayvault, Lovely (b0340) 2011; 28 Wilkins, VerBerkmoes, Williams, Callister, Mouser, Elifantz, N’Guessan, Thomas, Nicora, Shah, Abraham, Lipton, Lovley, Hettich, Long, Banfield (b0355) 2009; 75 Callister, Wilkins, Nicora, Williams, Banfield, VerBerkmoes, Hettich, N’Guessan, Mouser, Elifantz, Smith, Lovley, Lipton, Long (b0025) 2010; 44 Bolliger, Hohener, Hunkeler, Haberli, Zeyer (b0020) 1999; 10 Guenet, Danger, Abbadie, Lacroix (b9020) 2010; 91 Cole, Prairie, Caraco, McDowell, Tranvik, Striegl, Duarte, Kortelainen, Downing, Middelburg, Melack (b0050) 2007; 10 Matz, Kjelleberg (b0240) 2005; 13 Sutherland, Hughes, Skillman, Tait (b0295) 2004; 232 Low, Chase (b0220) 1999; 33 Li, Steefel, Williams, Wilkins, Hubbard (b0200) 2009; 43 Wommack, Colwell (b0360) 2000; 64 Scheibe, Mahadevan, Fang, Garg, Long, Lovley (b0275) 2009; 2 Lawrence, Snyder (b0185) 1998; 44 Elifantz, N’Guessan, Mouser, Williams, Wilkins, Risso, Holmes, Long, Lovley (b0085) 2010; 73 Tso, Taghon (b0305) 1999; 37 MacKenzie, Girishchandra (b0230) 1985; 50 Singh, Bardgett, Smith, Reay (b0285) 2010; 8 Wilkins, Callister, Miletto, Williams, Nicora, Lovley, Long, Lipton (b0350) 2011; 4 Handley, Wrighton, Piceno, Andersen, DeSantis, Williams, Wilkins, N’Guessan, Peacock, Barger, Long, Banfield (b0115) 2012; 81 Hohnstock-Ashe, Plummer, Yager, Baveye, Madsen (b0125) 2001; 35 Spycher, Issarangkun, Stewart, Sengor, Belding, Ginn, Peyton, Sani (b0290) 2011; 75 Williams, Ntarlagiannis, Slater, Dohnalkova, Hubbard, Banfield (b0345) 2005; 39 Yabusaki, Fang, Williams, Murray, Ward, Dayvault, Waichler, Newcomer, Spane, Long (b0370) 2011; 126 Anderson, Vrionis, Ortiz-Bernad, Resch, Long, Dayvault, Karp, Marutzky, Metzler, Peacock, White, Lowe, Lovely (b0005) 2003; 69 (b0265) 2012 Luo, Weber, Cirpka, Wu, Nyman, Carley, Jardine, Criddle, Kitanidis (b0225) 2007; 92 Ivanov, Atarashi, Manel, Brodie, Shima, Karaoz, Wel, Goldfarb, Santee, Lynch, Tonoue, Imaoka, Itoh, Takeda, Umesaki, Honda, Littman (b0150) 2009; 139 Caporaso, Bittinger, Bushman, DeSantis, Andersen, Knight (b0040) 2010; 26 Caporaso, Kuczynski, Stombaugh, Bittinger, Bushman, Costello, Fierer, Pena, Goodrich, Gordon, Huttley, Kelley, Knights, Koenig, Ley, Lozupone, McDonald, Muegge, Pirrung, Reeder, Sevinsky, Tumbaugh, Walters, Wildmann, Yatsunenko, Zaneveld, Knight (b0035) 2010; 7 Komada, Anderson, Dorfmeier (b0175) 2008; 6 Mason, Bryers, Hamer (b0235) 1986; 45 Edgar (b9010) 2010; 26 Lane (b9030) 1991 Fang, Scheibe, Mahadevan, Garg, Long, Lovley (b0095) 2011; 122 Banks, Bryers (b0010) 1990; 33 Lloyd, Macaskie (b0215) 2002; vol. 2 Liang, Van Nostrand, N’Guessan, Peacock, Deng, Long, Resch, Wu, He, Li, Hazen, Lovley, Zhou (b0205) 2012; 78 Whiticar (b0330) 1999; 161 Blagodatskaya, Kuzyakov (b0015) 2008; 45 Cole, Wang, Cardenas, Fish, Chai, Farris, Kulam-Syed-Mohideen, McGarrell, Marsh, Garrity, Tiedje (b9000) 2009; 37 Dar, Tan, Peacock, Jaffe, N’Guessan, Williams, Strycharz-Glaven (b0060) 2013; 23 Kerkhof, Williams, Long, McGuinness (b0170) 2011; 45 Rittmann, McCarty (b0270) 2001 Fang, Yabusaki, Morrison, Amonette, Long (b0100) 2009; 73 Meckenstock, Morasch, Griebler, Richnow (b0245) 2004; 75 Campbell, Kukkadapu, Qafoku, Peacock, Lesher, Williams, Bargar, Wilkins, Figueroa, Ranville, Davis, Long (b0030) 2012; 27 Harris, Horwáth, van Kessel (b0120) 2001; 65 Jin, Bethke (b0155) 2009; 37 Jin, Bethke (b0160) 2005; 69 Xu, Thornton, Post (b0365) 2013; 22 Zhou, Xue, Xie, Deng, Wu, Cheng, Fei, Deng, He, Van Nostrand, Luo (b0375) 2012; 2 Egemen, Corpening, Padilla, Brennan, Nirmalakhandan (b0080) 1999; 39 Jørgensen (b0165) 2007; 61 S fractionation. Hunkeler, Hohener, Bernasconi, Zeyer (b0140) 1999; 37 Conrad (10.1016/j.gca.2013.08.036_b9005) 2010; 44 Wang (10.1016/j.gca.2013.08.036_b0320) 2007; 73 Vrionis (10.1016/j.gca.2013.08.036_b0310) 2005; 71 Guenet (10.1016/j.gca.2013.08.036_b9020) 2010; 91 Fontaine (10.1016/j.gca.2013.08.036_b9015) 2007; 450 Mundle (10.1016/j.gca.2013.08.036_b0255) 2012; 46 Luo (10.1016/j.gca.2013.08.036_b0225) 2007; 92 Low (10.1016/j.gca.2013.08.036_b0220) 1999; 33 (10.1016/j.gca.2013.08.036_b0265) 2012 Jin (10.1016/j.gca.2013.08.036_b0155) 2009; 37 Kuban (10.1016/j.gca.2013.08.036_b0180) 2000; 404 Sutherland (10.1016/j.gca.2013.08.036_b0295) 2004; 232 Xu (10.1016/j.gca.2013.08.036_b0365) 2013; 22 Caporaso (10.1016/j.gca.2013.08.036_b0040) 2010; 26 Wommack (10.1016/j.gca.2013.08.036_b0360) 2000; 64 Williams (10.1016/j.gca.2013.08.036_b0335) 2013; 24 Mason (10.1016/j.gca.2013.08.036_b0235) 1986; 45 Williams (10.1016/j.gca.2013.08.036_b0340) 2011; 28 Dale (10.1016/j.gca.2013.08.036_b0055) 2008; 72 Druhan (10.1016/j.gca.2013.08.036_b0070) 2012; 46 Handley (10.1016/j.gca.2013.08.036_b0115) 2012; 81 Li (10.1016/j.gca.2013.08.036_b0195) 2010; 112 Fang (10.1016/j.gca.2013.08.036_b0095) 2011; 122 Singh (10.1016/j.gca.2013.08.036_b0285) 2010; 8 Cole (10.1016/j.gca.2013.08.036_b9000) 2009; 37 Lindgren (10.1016/j.gca.2013.08.036_b0210) 1996; 22 Spycher (10.1016/j.gca.2013.08.036_b0290) 2011; 75 Hunkeler (10.1016/j.gca.2013.08.036_b0140) 1999; 37 Meckenstock (10.1016/j.gca.2013.08.036_b0245) 2004; 75 Scheibe (10.1016/j.gca.2013.08.036_b0275) 2009; 2 Caporaso (10.1016/j.gca.2013.08.036_b0035) 2010; 7 Wilkins (10.1016/j.gca.2013.08.036_b0350) 2011; 4 Komada (10.1016/j.gca.2013.08.036_b0175) 2008; 6 Cole (10.1016/j.gca.2013.08.036_b0050) 2007; 10 Liang (10.1016/j.gca.2013.08.036_b0205) 2012; 78 Holmes (10.1016/j.gca.2013.08.036_b0135) 2002; 68 Blagodatskaya (10.1016/j.gca.2013.08.036_b0015) 2008; 45 10.1016/j.gca.2013.08.036_b0065 Holmes (10.1016/j.gca.2013.08.036_b0130) 2013; 7 Yabusaki (10.1016/j.gca.2013.08.036_b0370) 2011; 126 Fang (10.1016/j.gca.2013.08.036_b0090) 2012; 78 Wang (10.1016/j.gca.2013.08.036_b0325) 2001; 47 Hamady (10.1016/j.gca.2013.08.036_b0110) 2008; 5 Turner (10.1016/j.gca.2013.08.036_b0300) 1999; 54 MacKenzie (10.1016/j.gca.2013.08.036_b0230) 1985; 50 Rittmann (10.1016/j.gca.2013.08.036_b0270) 2001 Matz (10.1016/j.gca.2013.08.036_b0240) 2005; 13 Egemen (10.1016/j.gca.2013.08.036_b0080) 1999; 39 Lloyd (10.1016/j.gca.2013.08.036_b0215) 2002; vol. 2 N’Guessan (10.1016/j.gca.2013.08.036_b0260) 2008; 42 Campbell (10.1016/j.gca.2013.08.036_b0030) 2012; 27 Miletto (10.1016/j.gca.2013.08.036_b0250) 2011; 77 Tso (10.1016/j.gca.2013.08.036_b0305) 1999; 37 Hohnstock-Ashe (10.1016/j.gca.2013.08.036_b0125) 2001; 35 Fries (10.1016/j.gca.2013.08.036_b0105) 1994; 60 Wilkins (10.1016/j.gca.2013.08.036_b0355) 2009; 75 Fang (10.1016/j.gca.2013.08.036_b0100) 2009; 73 Callister (10.1016/j.gca.2013.08.036_b0025) 2010; 44 Chang (10.1016/j.gca.2013.08.036_b0045) 2005; 39 Dar (10.1016/j.gca.2013.08.036_b0060) 2013; 23 Jin (10.1016/j.gca.2013.08.036_b0160) 2005; 69 Li (10.1016/j.gca.2013.08.036_b0200) 2009; 43 Bolliger (10.1016/j.gca.2013.08.036_b0020) 1999; 10 Lawrence (10.1016/j.gca.2013.08.036_b0185) 1998; 44 Williams (10.1016/j.gca.2013.08.036_b0345) 2005; 39 Hunter (10.1016/j.gca.2013.08.036_b0145) 1998; 209 Ivanov (10.1016/j.gca.2013.08.036_b0150) 2009; 139 Whiticar (10.1016/j.gca.2013.08.036_b0330) 1999; 161 Jørgensen (10.1016/j.gca.2013.08.036_b0165) 2007; 61 Anderson (10.1016/j.gca.2013.08.036_b0005) 2003; 69 Edgar (10.1016/j.gca.2013.08.036_b9010) 2010; 26 Kerkhof (10.1016/j.gca.2013.08.036_b0170) 2011; 45 Harris (10.1016/j.gca.2013.08.036_b0120) 2001; 65 Lane (10.1016/j.gca.2013.08.036_b9030) 1991 Shi (10.1016/j.gca.2013.08.036_b0280) 1999; 65 Elifantz (10.1016/j.gca.2013.08.036_b0085) 2010; 73 Banks (10.1016/j.gca.2013.08.036_b0010) 1990; 33 Zhou (10.1016/j.gca.2013.08.036_b0375) 2012; 2 Wand (10.1016/j.gca.2013.08.036_b0315) 2007; 41 |
References_xml | – volume: 60 start-page: 2802 year: 1994 end-page: 2810 ident: b0105 article-title: Isolation, characterization and distribution of denitrifying toluene degraders from a variety of habitats publication-title: Appl. Environ. Microbiol. contributor: fullname: Tiedje – volume: 161 start-page: 291 year: 1999 end-page: 314 ident: b0330 article-title: Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane publication-title: Chem. Geol. contributor: fullname: Whiticar – volume: 43 start-page: 5429 year: 2009 end-page: 5435 ident: b0200 article-title: Mineral transformation and biomass accumulation associated with uranium bio-remediation at Rifle, Colorado publication-title: Environ. Sci. Technol. contributor: fullname: Hubbard – volume: 46 start-page: 1731 year: 2012 end-page: 1738 ident: b0255 article-title: Monitoring biodegradation of ethene and bioremediation of chlorinated ethenes at a contaminated site using compound-specific isotope analysis (CSIA) publication-title: Environ. Sci. Technol. contributor: fullname: Lollar – volume: 37 start-page: D141 year: 2009 end-page: D145 ident: b9000 article-title: The Ribosomal Database Project: improved alignments and new tools for rRNA analysis publication-title: Nucleic Acids Research contributor: fullname: Tiedje – volume: 8 start-page: 779 year: 2010 end-page: 790 ident: b0285 article-title: Microorganisms and climate change: Terrestrial feedbacks and mitigation options publication-title: Nat. Rev. Microbiol. contributor: fullname: Reay – volume: 5 start-page: 235 year: 2008 end-page: 237 ident: b0110 article-title: Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex publication-title: Nat. Methods contributor: fullname: Knight – volume: 139 start-page: 485 year: 2009 end-page: 498 ident: b0150 article-title: Induction of intestinal Th17 cells by segmented filamentous bacteria publication-title: Cell contributor: fullname: Littman – volume: 39 start-page: 155 year: 1999 end-page: 158 ident: b0080 article-title: Evaluation of ozonation and cryptic growth for biosolids management in wastewater treatment publication-title: Water Sci. Technol. contributor: fullname: Nirmalakhandan – volume: 75 start-page: 4426 year: 2011 end-page: 4440 ident: b0290 article-title: Biogenic uraninite precipitation and its reoxidation by iron(III) (hydr)oxides: A reaction modeling approach publication-title: Geochim. Cosmochim. Acta contributor: fullname: Sani – volume: 6 start-page: 254 year: 2008 end-page: 262 ident: b0175 article-title: Carbonate removal from coastal sediments for the determination of organic carbon and its isotopic signatures, δ publication-title: Limnol. Oceanogr. Methods contributor: fullname: Dorfmeier – volume: 45 start-page: 115 year: 2008 end-page: 131 ident: b0015 article-title: Mechanisms of real and apparent priming effects and their dependence on soil microbial biomass and community structure: Critical review publication-title: Biol. Fertil. Soils contributor: fullname: Kuzyakov – volume: 112 start-page: 45 year: 2010 end-page: 63 ident: b0195 article-title: Effects of physical and geochemical heterogeneities on mineral transformation and biomass accumulation during biostimulation experiments at Rifle, Colorado publication-title: J. Contam. Hydrol. contributor: fullname: Hubbard – volume: 81 start-page: 188 year: 2012 end-page: 204 ident: b0115 article-title: High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment publication-title: FEMS Microbiol. Ecol. contributor: fullname: Banfield – volume: 7 start-page: 335 year: 2010 end-page: 336 ident: b0035 article-title: QIIME allows analysis of high-throughput community sequencing data publication-title: Nat. Methods contributor: fullname: Knight – volume: 10 start-page: 171 year: 2007 end-page: 184 ident: b0050 article-title: Plumbing the global carbon cycle: Integrating inland waters into the terrestrial carbon budget publication-title: Ecosystems contributor: fullname: Melack – volume: 27 start-page: 1499 year: 2012 end-page: 1511 ident: b0030 article-title: Geochemical, mineralogical and microbiological characteristics of sediment from a naturally reduced zone in a uranium-contaminated aquifer publication-title: Appl. Geochem. contributor: fullname: Long – volume: 78 start-page: 8735 year: 2012 end-page: 8742 ident: b0090 article-title: Evaluation of a genome-scale in silico metabolic model for publication-title: Appl. Environ. Microbiol. contributor: fullname: Long – volume: 71 start-page: 6308 year: 2005 end-page: 6318 ident: b0310 article-title: Microbiological and geochemical heterogeneity in an in situ uranium bioremediaton field site publication-title: Appl. Environ. Microbiol. contributor: fullname: Lovley – volume: 2 start-page: 274 year: 2009 end-page: 286 ident: b0275 article-title: Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation publication-title: Microb. Biotechnol. contributor: fullname: Lovley – volume: 33 start-page: 596 year: 1990 end-page: 601 ident: b0010 article-title: Cryptic growth within a binary microbial culture publication-title: Appl. Microbiol. Biotechnol. contributor: fullname: Bryers – volume: 69 start-page: 2005 year: 2005 ident: b0160 article-title: Predicting the rate of microbial respiration in geochemical environments publication-title: Geochim. Cosmochim. Acta contributor: fullname: Bethke – volume: 450 year: 2007 ident: b9015 article-title: Stability of organic carbon in deep soil layers controlled by fresh carbon supply publication-title: Nature contributor: fullname: Rumpel – volume: 122 start-page: 96 year: 2011 end-page: 103 ident: b0095 article-title: Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model publication-title: J. Contam. Hydrol. contributor: fullname: Lovley – volume: 22 start-page: 737 year: 2013 end-page: 749 ident: b0365 article-title: A global analysis of soil microbial biomass carbon, nitrogen and phosphorus in terrestrial ecosystems publication-title: Glob. Ecol. Biogeogr. contributor: fullname: Post – volume: 33 start-page: 1119 year: 1999 end-page: 1132 ident: b0220 article-title: Reducing production of excess biomass during wastewater treatment publication-title: Water Res. contributor: fullname: Chase – volume: 50 start-page: 243 year: 1985 end-page: 248 ident: b0230 article-title: Studies on cellulose hydrolysis by publication-title: Appl. Environ. Microbiol. contributor: fullname: Girishchandra – volume: 44 start-page: 623 year: 1998 end-page: 629 ident: b0185 article-title: Feeding behavior and grazing impacts of a publication-title: Can. J. Microbiol. contributor: fullname: Snyder – volume: 126 start-page: 271 year: 2011 end-page: 290 ident: b0370 article-title: Variably saturated flow and multicomponent biogeochemical reactive transport modeling of a uranium bioremediation field experiment publication-title: J. Contam. Hydrol. contributor: fullname: Long – volume: 73 start-page: 6029 year: 2009 end-page: 6051 ident: b0100 article-title: Multicomponent reactive transport modeling of uranium bioremediation field experiments publication-title: Geochim. Cosmochim. Acta contributor: fullname: Long – volume: 2 start-page: 106 year: 2012 end-page: 110 ident: b0375 article-title: Microbial mediation of carbon-cycle feedbacks to climate warming publication-title: Nat. Climate Change contributor: fullname: Luo – volume: 69 start-page: 5884 year: 2003 end-page: 5891 ident: b0005 article-title: Stimulating the publication-title: Appl. Environ. Microbiol. contributor: fullname: Lovely – year: 2001 ident: b0270 article-title: Environmental Biotechnology: Principles and Applications contributor: fullname: McCarty – volume: 47 start-page: 2001 year: 2001 ident: b0325 article-title: Kinetic modeling of microbially – Driven redox chemistry of radionuclides in subsurface environments: Coupling transport, microbial metabolism and geochemistry publication-title: J. Contam. Hydrol. contributor: fullname: Papenguth – volume: 65 start-page: 1853 year: 2001 end-page: 1856 ident: b0120 article-title: Acid fumigation of soils to remove carbonates prior to total organic carbon or carbon-13 isotopic analysis publication-title: Soil Sci. Soc. Am. J. contributor: fullname: van Kessel – volume: 45 start-page: 1250 year: 2011 end-page: 1256 ident: b0170 article-title: Phase preference by active, acetate-utilizing bacteria at the Rifle, CO Integrated Field Research Challenge Site publication-title: Environ. Sci. Technol. contributor: fullname: McGuinness – start-page: 115 year: 1991 end-page: 175 ident: b9030 article-title: 16S/23S rRNA sequencing publication-title: Nucleic acid techniques in bacterial systematics contributor: fullname: Lane – volume: 73 start-page: 5261 year: 2007 end-page: 5267 ident: b0320 article-title: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy publication-title: Appl. Environ. Microbiol. contributor: fullname: Cole – volume: 91 start-page: 2850 year: 2010 end-page: 2861 ident: b9020 article-title: Priming effect: Bridging the gap between terrestrial and aquatic ecology publication-title: Ecology contributor: fullname: Lacroix – volume: 45 start-page: 163 year: 1986 end-page: 176 ident: b0235 article-title: Activity, death and lysis during microbial-growth in a chemostat publication-title: Chem. Eng. Commun. contributor: fullname: Hamer – volume: 77 start-page: 6502 year: 2011 end-page: 6509 ident: b0250 article-title: Molecular analysis of the metabolic rates of discrete subsurface populations of sulfate reducers publication-title: Appl. Environ. Microbiol. contributor: fullname: Lovley – volume: 64 start-page: 69 year: 2000 end-page: 114 ident: b0360 article-title: Virioplankton: Viruses in aquatic ecosystems publication-title: Microbiol. Mol. Biol. Rev. contributor: fullname: Colwell – volume: 232 start-page: 1 year: 2004 end-page: 6 ident: b0295 article-title: The interaction of phage and biofilms publication-title: FEMS Microbiol. Lett. contributor: fullname: Tait – volume: 68 start-page: 2300 year: 2002 end-page: 2306 ident: b0135 article-title: Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium – Contaminated aquifer sediments publication-title: Appl. Environ. Microbiol. contributor: fullname: Lovley – volume: 54 start-page: 400 year: 1999 end-page: 404 ident: b0300 article-title: HLA-A typing by reference strand-mediated conformation analysis (RSCA) using a capillary-based semi-automated genetic analyser publication-title: Tissue Antigens contributor: fullname: Navarrete – volume: 44 start-page: 4697 year: 2010 end-page: 4704 ident: b9005 article-title: Field evidence for co-metabolism of trichloroethene stimulated by addition of electron donor to groundwater publication-title: Environ. Sci. Technol. contributor: fullname: Colwell – volume: 39 start-page: 7592 year: 2005 end-page: 7600 ident: b0345 article-title: Geophysical imaging of stimulated microbial biomineralization publication-title: Environ. Sci. Technol. contributor: fullname: Banfield – volume: 23 start-page: 31 year: 2013 end-page: 49 ident: b0060 article-title: Spatial distribution of Geobacteraceae and sulfate reducing bacteria during in situ bioremediation of uranium contaminated groundwater publication-title: Remediation Journal contributor: fullname: Strycharz-Glaven – volume: 92 start-page: 129 year: 2007 end-page: 148 ident: b0225 article-title: Modeling in-situ uranium (VI) bioreduction by sulfate-reducing bacteria publication-title: J. Contam. Hydrol. contributor: fullname: Kitanidis – volume: 37 start-page: 201 year: 1999 end-page: 223 ident: b0140 article-title: Engineered in situ bioremediation of a petroleum hydrocarbon-contaminated aquifer: Assessment of mineralization based on alkalinity, inorganic carbon and stable carbon isotope balances publication-title: J. Contam. Hydrol. contributor: fullname: Zeyer – volume: vol. 2 year: 2002 ident: b0215 article-title: Biochemical basis of microbe-radionuclide interactions publication-title: Interactions of Microorganisms with Radionuclides in Radioactivity in the Environment contributor: fullname: Macaskie – volume: 42 start-page: 2999 year: 2008 end-page: 3004 ident: b0260 article-title: Sustained removal of uranium from contaminated groundwater following stimulation of dissimilatory metal reduction publication-title: Environ. Sci. Technol. contributor: fullname: Lovley – volume: 7 start-page: 1286 year: 2013 end-page: 1298 ident: b0130 article-title: Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater publication-title: ISME J. contributor: fullname: Lovley – year: 2012 ident: b0265 article-title: R: A language and environment for statistical computing – volume: 39 start-page: 9039 year: 2005 end-page: 9048 ident: b0045 article-title: Microbial incorporation of publication-title: Environ. Sci. Technol. contributor: fullname: White – volume: 35 start-page: 4449 year: 2001 end-page: 4456 ident: b0125 article-title: Further biogeochemical characterization of a trichloroethene-contaminated fractured dolomite aquifer: Electron source and microbial communities involved in reductive dechlorination publication-title: Environ. Sci. Technol. contributor: fullname: Madsen – volume: 65 start-page: 2143 year: 1999 end-page: 2150 ident: b0280 article-title: Molecular analysis of microbial community structures in pristine and contaminated aquifers: Field and laboratory microcosm experiments publication-title: Appl. Environ. Microbiol. contributor: fullname: Hickey – volume: 26 start-page: 2460 year: 2010 end-page: 2461 ident: b9010 article-title: Search and clustering orders of magnitude faster than BLAST publication-title: Bioinformatics contributor: fullname: Edgar – volume: 13 start-page: 302 year: 2005 end-page: 307 ident: b0240 article-title: Off the hook—how bacteria survive protozoan grazing publication-title: Trends Microbiol. contributor: fullname: Kjelleberg – volume: 37 start-page: 3 year: 1999 end-page: 12 ident: b0305 article-title: Factors affecting predation by publication-title: Microb. Ecol. contributor: fullname: Taghon – volume: 75 start-page: 6591 year: 2009 end-page: 6599 ident: b0355 article-title: Proteogenomic monitoring of geobacter physiology during stimulated uranium bioremediation publication-title: Appl. Environ. Microbiol. contributor: fullname: Banfield – volume: 72 start-page: 2880 year: 2008 end-page: 2894 ident: b0055 article-title: Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II Reaction-transport modeling publication-title: Geochim. Cosmochim. Acta contributor: fullname: Van Cappellen – volume: 209 start-page: 53 year: 1998 end-page: 80 ident: b0145 article-title: Kinetic modeling of microbially driven redox chemistry of subsurface environments: Coupling transport, microbial metabolism and geochemistry publication-title: J. Hydrol. contributor: fullname: Van Cappellen – volume: 73 start-page: 441 year: 2010 end-page: 449 ident: b0085 article-title: Expression of acetate permease-like (apl) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations publication-title: FEMS Microbiol. Ecol. contributor: fullname: Lovley – volume: 44 start-page: 8897 year: 2010 end-page: 8903 ident: b0025 article-title: Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles publication-title: Environ. Sci. Technol. contributor: fullname: Long – volume: 10 start-page: 201 year: 1999 end-page: 217 ident: b0020 article-title: Intrinsic bioremediation of a petroleum hydrocarbon-contaminated aquifer and assessment of mineralization based on stable carbon isotopes publication-title: Biodegredation contributor: fullname: Zeyer – volume: 28 start-page: 519 year: 2011 end-page: 539 ident: b0340 article-title: Acetate availability and its influence on sustainable bioremediation of uranium-contaminated groundwater publication-title: Geomicrobiol J. contributor: fullname: Lovely – volume: 4 start-page: 55 year: 2011 end-page: 63 ident: b0350 article-title: Development of a biomarker for Geobacter activity and strain composition; Proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI) publication-title: Microb. Biotechnol. contributor: fullname: Lipton – volume: 24 start-page: 489 year: 2013 end-page: 497 ident: b0335 article-title: Bioremediation of uranium-contaminated groundwater: A systems approach to subsurface biogeochemistry publication-title: Curr. Opin. Biotechnol. contributor: fullname: Lovley – volume: 26 start-page: 266 year: 2010 end-page: 267 ident: b0040 article-title: PyNAST: A flexible tool for aligning sequences to a template alignment publication-title: Bioinformatics contributor: fullname: Knight – volume: 22 start-page: J290 year: 1996 end-page: J295 ident: b0210 article-title: The kinetics of residual delignification and factors affecting the amount of residual lignin during kraft pulping publication-title: J. Pulp Pap. Sci. contributor: fullname: Lindstrom – volume: 41 start-page: 159 year: 2007 end-page: 167 ident: b0315 article-title: Removal of bacteria by filtration in planted and non-planted sand columns publication-title: Water Res. contributor: fullname: Kastner – volume: 46 start-page: 8895 year: 2012 end-page: 8902 ident: b0070 article-title: Timing the onset of sulfate reduction over multiple subsurface acetate amendments by measurement and modeling of sulfur isotope fractionation publication-title: Environ. Sci. Technol. contributor: fullname: DePaolo – volume: 61 start-page: 285 year: 2007 end-page: 305 ident: b0165 article-title: bioremediation publication-title: Adv. Appl. Microbiol. contributor: fullname: Jørgensen – volume: 78 start-page: 2966 year: 2012 end-page: 2972 ident: b0205 article-title: Microbial function gene diversity with a shift of subsurface redox conditions during in situ uranium reduction publication-title: Appl. Environ. Microbiol. contributor: fullname: Zhou – volume: 37 start-page: 1027 year: 2009 end-page: 1030 ident: b0155 article-title: Cellular energy conservation and the rate of microbial sulfate reduction publication-title: Geology contributor: fullname: Bethke – volume: 75 start-page: 215 year: 2004 end-page: 255 ident: b0245 article-title: Stable isotope fractionation analysis as a tool to monitor biodegradation in contaminated aquifers publication-title: J. Contam. Hydrol. contributor: fullname: Richnow – volume: 404 start-page: 19 year: 2000 end-page: 28 ident: b0180 article-title: On-line monitoring of kraft pulping liquors with a valveless flow injection-capillary electrophoresis system publication-title: Anal. Chim. Acta contributor: fullname: Karlberg – volume: 8 start-page: 779 year: 2010 ident: 10.1016/j.gca.2013.08.036_b0285 article-title: Microorganisms and climate change: Terrestrial feedbacks and mitigation options publication-title: Nat. Rev. Microbiol. doi: 10.1038/nrmicro2439 contributor: fullname: Singh – volume: 4 start-page: 55 issue: 1 year: 2011 ident: 10.1016/j.gca.2013.08.036_b0350 article-title: Development of a biomarker for Geobacter activity and strain composition; Proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI) publication-title: Microb. Biotechnol. doi: 10.1111/j.1751-7915.2010.00194.x contributor: fullname: Wilkins – volume: 73 start-page: 5261 year: 2007 ident: 10.1016/j.gca.2013.08.036_b0320 article-title: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.00062-07 contributor: fullname: Wang – volume: 33 start-page: 596 issue: 5 year: 1990 ident: 10.1016/j.gca.2013.08.036_b0010 article-title: Cryptic growth within a binary microbial culture publication-title: Appl. Microbiol. Biotechnol. doi: 10.1007/BF00172558 contributor: fullname: Banks – volume: 45 start-page: 115 issue: 2 year: 2008 ident: 10.1016/j.gca.2013.08.036_b0015 article-title: Mechanisms of real and apparent priming effects and their dependence on soil microbial biomass and community structure: Critical review publication-title: Biol. Fertil. Soils doi: 10.1007/s00374-008-0334-y contributor: fullname: Blagodatskaya – volume: 126 start-page: 271 year: 2011 ident: 10.1016/j.gca.2013.08.036_b0370 article-title: Variably saturated flow and multicomponent biogeochemical reactive transport modeling of a uranium bioremediation field experiment publication-title: J. Contam. Hydrol. doi: 10.1016/j.jconhyd.2011.09.002 contributor: fullname: Yabusaki – volume: 7 start-page: 335 year: 2010 ident: 10.1016/j.gca.2013.08.036_b0035 article-title: QIIME allows analysis of high-throughput community sequencing data publication-title: Nat. Methods doi: 10.1038/nmeth.f.303 contributor: fullname: Caporaso – volume: 13 start-page: 302 year: 2005 ident: 10.1016/j.gca.2013.08.036_b0240 article-title: Off the hook—how bacteria survive protozoan grazing publication-title: Trends Microbiol. doi: 10.1016/j.tim.2005.05.009 contributor: fullname: Matz – volume: 26 start-page: 266 year: 2010 ident: 10.1016/j.gca.2013.08.036_b0040 article-title: PyNAST: A flexible tool for aligning sequences to a template alignment publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp636 contributor: fullname: Caporaso – volume: 112 start-page: 45 year: 2010 ident: 10.1016/j.gca.2013.08.036_b0195 article-title: Effects of physical and geochemical heterogeneities on mineral transformation and biomass accumulation during biostimulation experiments at Rifle, Colorado publication-title: J. Contam. Hydrol. doi: 10.1016/j.jconhyd.2009.10.006 contributor: fullname: Li – volume: 23 start-page: 31 issue: 2 year: 2013 ident: 10.1016/j.gca.2013.08.036_b0060 article-title: Spatial distribution of Geobacteraceae and sulfate reducing bacteria during in situ bioremediation of uranium contaminated groundwater publication-title: Remediation Journal doi: 10.1002/rem.21347 contributor: fullname: Dar – volume: 35 start-page: 4449 issue: 22 year: 2001 ident: 10.1016/j.gca.2013.08.036_b0125 article-title: Further biogeochemical characterization of a trichloroethene-contaminated fractured dolomite aquifer: Electron source and microbial communities involved in reductive dechlorination publication-title: Environ. Sci. Technol. doi: 10.1021/es0110067 contributor: fullname: Hohnstock-Ashe – volume: 92 start-page: 129 year: 2007 ident: 10.1016/j.gca.2013.08.036_b0225 article-title: Modeling in-situ uranium (VI) bioreduction by sulfate-reducing bacteria publication-title: J. Contam. Hydrol. doi: 10.1016/j.jconhyd.2007.01.004 contributor: fullname: Luo – volume: 37 start-page: 3 year: 1999 ident: 10.1016/j.gca.2013.08.036_b0305 article-title: Factors affecting predation byCyclidiumsp. andEuplotessp. on PAH-degrading and nondegrading bacteria publication-title: Microb. Ecol. doi: 10.1007/s002489900125 contributor: fullname: Tso – volume: 24 start-page: 489 issue: 3 year: 2013 ident: 10.1016/j.gca.2013.08.036_b0335 article-title: Bioremediation of uranium-contaminated groundwater: A systems approach to subsurface biogeochemistry publication-title: Curr. Opin. Biotechnol. doi: 10.1016/j.copbio.2012.10.008 contributor: fullname: Williams – volume: 33 start-page: 1119 issue: 5 year: 1999 ident: 10.1016/j.gca.2013.08.036_b0220 article-title: Reducing production of excess biomass during wastewater treatment publication-title: Water Res. doi: 10.1016/S0043-1354(98)00325-X contributor: fullname: Low – volume: 7 start-page: 1286 issue: 7 year: 2013 ident: 10.1016/j.gca.2013.08.036_b0130 article-title: Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater publication-title: ISME J. doi: 10.1038/ismej.2013.20 contributor: fullname: Holmes – volume: 54 start-page: 400 issue: 4 year: 1999 ident: 10.1016/j.gca.2013.08.036_b0300 article-title: HLA-A typing by reference strand-mediated conformation analysis (RSCA) using a capillary-based semi-automated genetic analyser publication-title: Tissue Antigens doi: 10.1034/j.1399-0039.1999.540410.x contributor: fullname: Turner – volume: 69 start-page: 2005 year: 2005 ident: 10.1016/j.gca.2013.08.036_b0160 article-title: Predicting the rate of microbial respiration in geochemical environments publication-title: Geochim. Cosmochim. Acta doi: 10.1016/j.gca.2004.08.010 contributor: fullname: Jin – volume: 450 issue: 7167 year: 2007 ident: 10.1016/j.gca.2013.08.036_b9015 article-title: Stability of organic carbon in deep soil layers controlled by fresh carbon supply publication-title: Nature doi: 10.1038/nature06275 contributor: fullname: Fontaine – volume: 72 start-page: 2880 year: 2008 ident: 10.1016/j.gca.2013.08.036_b0055 article-title: Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II Reaction-transport modeling publication-title: Geochim. Cosmochim. Acta doi: 10.1016/j.gca.2007.11.039 contributor: fullname: Dale – volume: 71 start-page: 6308 year: 2005 ident: 10.1016/j.gca.2013.08.036_b0310 article-title: Microbiological and geochemical heterogeneity in an in situ uranium bioremediaton field site publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.71.10.6308-6318.2005 contributor: fullname: Vrionis – volume: 45 start-page: 163 issue: 1–6 year: 1986 ident: 10.1016/j.gca.2013.08.036_b0235 article-title: Activity, death and lysis during microbial-growth in a chemostat publication-title: Chem. Eng. Commun. doi: 10.1080/00986448608911380 contributor: fullname: Mason – ident: 10.1016/j.gca.2013.08.036_b0065 doi: 10.1016/j.gca.2013.08.037 – volume: 122 start-page: 96 issue: 1–4 year: 2011 ident: 10.1016/j.gca.2013.08.036_b0095 article-title: Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model publication-title: J. Contam. Hydrol. doi: 10.1016/j.jconhyd.2010.11.007 contributor: fullname: Fang – volume: 73 start-page: 6029 year: 2009 ident: 10.1016/j.gca.2013.08.036_b0100 article-title: Multicomponent reactive transport modeling of uranium bioremediation field experiments publication-title: Geochim. Cosmochim. Acta doi: 10.1016/j.gca.2009.07.019 contributor: fullname: Fang – volume: 78 start-page: 8735 issue: 24 year: 2012 ident: 10.1016/j.gca.2013.08.036_b0090 article-title: Evaluation of a genome-scale in silico metabolic model for Geobacter metallireducens by suing proteomic data from a field biostimulation experiment publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.01795-12 contributor: fullname: Fang – volume: 37 start-page: 201 issue: 3–4 year: 1999 ident: 10.1016/j.gca.2013.08.036_b0140 article-title: Engineered in situ bioremediation of a petroleum hydrocarbon-contaminated aquifer: Assessment of mineralization based on alkalinity, inorganic carbon and stable carbon isotope balances publication-title: J. Contam. Hydrol. doi: 10.1016/S0169-7722(99)00003-0 contributor: fullname: Hunkeler – year: 2012 ident: 10.1016/j.gca.2013.08.036_b0265 – volume: 47 start-page: 2001 year: 2001 ident: 10.1016/j.gca.2013.08.036_b0325 article-title: Kinetic modeling of microbially – Driven redox chemistry of radionuclides in subsurface environments: Coupling transport, microbial metabolism and geochemistry publication-title: J. Contam. Hydrol. doi: 10.1016/S0169-7722(00)00158-3 contributor: fullname: Wang – volume: 64 start-page: 69 issue: 1 year: 2000 ident: 10.1016/j.gca.2013.08.036_b0360 article-title: Virioplankton: Viruses in aquatic ecosystems publication-title: Microbiol. Mol. Biol. Rev. doi: 10.1128/MMBR.64.1.69-114.2000 contributor: fullname: Wommack – volume: 161 start-page: 291 year: 1999 ident: 10.1016/j.gca.2013.08.036_b0330 article-title: Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane publication-title: Chem. Geol. doi: 10.1016/S0009-2541(99)00092-3 contributor: fullname: Whiticar – volume: 65 start-page: 2143 issue: 5 year: 1999 ident: 10.1016/j.gca.2013.08.036_b0280 article-title: Molecular analysis of microbial community structures in pristine and contaminated aquifers: Field and laboratory microcosm experiments publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.65.5.2143-2150.1999 contributor: fullname: Shi – volume: 22 start-page: J290 issue: 8 year: 1996 ident: 10.1016/j.gca.2013.08.036_b0210 article-title: The kinetics of residual delignification and factors affecting the amount of residual lignin during kraft pulping publication-title: J. Pulp Pap. Sci. contributor: fullname: Lindgren – volume: 209 start-page: 53 year: 1998 ident: 10.1016/j.gca.2013.08.036_b0145 article-title: Kinetic modeling of microbially driven redox chemistry of subsurface environments: Coupling transport, microbial metabolism and geochemistry publication-title: J. Hydrol. doi: 10.1016/S0022-1694(98)00157-7 contributor: fullname: Hunter – volume: vol. 2 year: 2002 ident: 10.1016/j.gca.2013.08.036_b0215 article-title: Biochemical basis of microbe-radionuclide interactions contributor: fullname: Lloyd – volume: 75 start-page: 215 issue: 3–4 year: 2004 ident: 10.1016/j.gca.2013.08.036_b0245 article-title: Stable isotope fractionation analysis as a tool to monitor biodegradation in contaminated aquifers publication-title: J. Contam. Hydrol. doi: 10.1016/j.jconhyd.2004.06.003 contributor: fullname: Meckenstock – volume: 46 start-page: 1731 issue: 3 year: 2012 ident: 10.1016/j.gca.2013.08.036_b0255 article-title: Monitoring biodegradation of ethene and bioremediation of chlorinated ethenes at a contaminated site using compound-specific isotope analysis (CSIA) publication-title: Environ. Sci. Technol. doi: 10.1021/es202792x contributor: fullname: Mundle – volume: 5 start-page: 235 year: 2008 ident: 10.1016/j.gca.2013.08.036_b0110 article-title: Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex publication-title: Nat. Methods doi: 10.1038/nmeth.1184 contributor: fullname: Hamady – volume: 43 start-page: 5429 year: 2009 ident: 10.1016/j.gca.2013.08.036_b0200 article-title: Mineral transformation and biomass accumulation associated with uranium bio-remediation at Rifle, Colorado publication-title: Environ. Sci. Technol. doi: 10.1021/es900016v contributor: fullname: Li – volume: 78 start-page: 2966 issue: 8 year: 2012 ident: 10.1016/j.gca.2013.08.036_b0205 article-title: Microbial function gene diversity with a shift of subsurface redox conditions during in situ uranium reduction publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.06528-11 contributor: fullname: Liang – volume: 232 start-page: 1 issue: 1 year: 2004 ident: 10.1016/j.gca.2013.08.036_b0295 article-title: The interaction of phage and biofilms publication-title: FEMS Microbiol. Lett. doi: 10.1016/S0378-1097(04)00041-2 contributor: fullname: Sutherland – volume: 73 start-page: 441 issue: 3 year: 2010 ident: 10.1016/j.gca.2013.08.036_b0085 article-title: Expression of acetate permease-like (apl) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations publication-title: FEMS Microbiol. Ecol. contributor: fullname: Elifantz – volume: 68 start-page: 2300 issue: 5 year: 2002 ident: 10.1016/j.gca.2013.08.036_b0135 article-title: Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium – Contaminated aquifer sediments publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.68.5.2300-2306.2002 contributor: fullname: Holmes – volume: 37 start-page: D141 year: 2009 ident: 10.1016/j.gca.2013.08.036_b9000 article-title: The Ribosomal Database Project: improved alignments and new tools for rRNA analysis publication-title: Nucleic Acids Research doi: 10.1093/nar/gkn879 contributor: fullname: Cole – volume: 41 start-page: 159 issue: 1 year: 2007 ident: 10.1016/j.gca.2013.08.036_b0315 article-title: Removal of bacteria by filtration in planted and non-planted sand columns publication-title: Water Res. doi: 10.1016/j.watres.2006.08.024 contributor: fullname: Wand – volume: 77 start-page: 6502 issue: 18 year: 2011 ident: 10.1016/j.gca.2013.08.036_b0250 article-title: Molecular analysis of the metabolic rates of discrete subsurface populations of sulfate reducers publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.00576-11 contributor: fullname: Miletto – volume: 39 start-page: 7592 issue: 19 year: 2005 ident: 10.1016/j.gca.2013.08.036_b0345 article-title: Geophysical imaging of stimulated microbial biomineralization publication-title: Environ. Sci. Technol. doi: 10.1021/es0504035 contributor: fullname: Williams – volume: 44 start-page: 4697 issue: 12 year: 2010 ident: 10.1016/j.gca.2013.08.036_b9005 article-title: Field evidence for co-metabolism of trichloroethene stimulated by addition of electron donor to groundwater publication-title: Environ. Sci. Technol. doi: 10.1021/es903535j contributor: fullname: Conrad – volume: 2 start-page: 106 year: 2012 ident: 10.1016/j.gca.2013.08.036_b0375 article-title: Microbial mediation of carbon-cycle feedbacks to climate warming publication-title: Nat. Climate Change doi: 10.1038/nclimate1331 contributor: fullname: Zhou – volume: 65 start-page: 1853 year: 2001 ident: 10.1016/j.gca.2013.08.036_b0120 article-title: Acid fumigation of soils to remove carbonates prior to total organic carbon or carbon-13 isotopic analysis publication-title: Soil Sci. Soc. Am. J. doi: 10.2136/sssaj2001.1853 contributor: fullname: Harris – volume: 10 start-page: 201 issue: 3 year: 1999 ident: 10.1016/j.gca.2013.08.036_b0020 article-title: Intrinsic bioremediation of a petroleum hydrocarbon-contaminated aquifer and assessment of mineralization based on stable carbon isotopes publication-title: Biodegredation doi: 10.1023/A:1008375213687 contributor: fullname: Bolliger – volume: 27 start-page: 1499 issue: 8 year: 2012 ident: 10.1016/j.gca.2013.08.036_b0030 article-title: Geochemical, mineralogical and microbiological characteristics of sediment from a naturally reduced zone in a uranium-contaminated aquifer publication-title: Appl. Geochem. doi: 10.1016/j.apgeochem.2012.04.013 contributor: fullname: Campbell – volume: 46 start-page: 8895 issue: 16 year: 2012 ident: 10.1016/j.gca.2013.08.036_b0070 article-title: Timing the onset of sulfate reduction over multiple subsurface acetate amendments by measurement and modeling of sulfur isotope fractionation publication-title: Environ. Sci. Technol. doi: 10.1021/es302016p contributor: fullname: Druhan – volume: 22 start-page: 737 issue: 6 year: 2013 ident: 10.1016/j.gca.2013.08.036_b0365 article-title: A global analysis of soil microbial biomass carbon, nitrogen and phosphorus in terrestrial ecosystems publication-title: Glob. Ecol. Biogeogr. doi: 10.1111/geb.12029 contributor: fullname: Xu – volume: 75 start-page: 4426 issue: 16 year: 2011 ident: 10.1016/j.gca.2013.08.036_b0290 article-title: Biogenic uraninite precipitation and its reoxidation by iron(III) (hydr)oxides: A reaction modeling approach publication-title: Geochim. Cosmochim. Acta doi: 10.1016/j.gca.2011.05.008 contributor: fullname: Spycher – volume: 39 start-page: 9039 year: 2005 ident: 10.1016/j.gca.2013.08.036_b0045 article-title: Microbial incorporation of 13C-labeled acetate at the field scale: Detection of microbes responsible for reduction of U(VI) publication-title: Environ. Sci. Technol. doi: 10.1021/es051218u contributor: fullname: Chang – volume: 75 start-page: 6591 issue: 20 year: 2009 ident: 10.1016/j.gca.2013.08.036_b0355 article-title: Proteogenomic monitoring of geobacter physiology during stimulated uranium bioremediation publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.01064-09 contributor: fullname: Wilkins – volume: 42 start-page: 2999 year: 2008 ident: 10.1016/j.gca.2013.08.036_b0260 article-title: Sustained removal of uranium from contaminated groundwater following stimulation of dissimilatory metal reduction publication-title: Environ. Sci. Technol. doi: 10.1021/es071960p contributor: fullname: N’Guessan – volume: 44 start-page: 8897 issue: 23 year: 2010 ident: 10.1016/j.gca.2013.08.036_b0025 article-title: Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles publication-title: Environ. Sci. Technol. doi: 10.1021/es101029f contributor: fullname: Callister – volume: 39 start-page: 155 issue: 10–11 year: 1999 ident: 10.1016/j.gca.2013.08.036_b0080 article-title: Evaluation of ozonation and cryptic growth for biosolids management in wastewater treatment publication-title: Water Sci. Technol. doi: 10.1016/S0273-1223(99)00267-X contributor: fullname: Egemen – volume: 61 start-page: 285 year: 2007 ident: 10.1016/j.gca.2013.08.036_b0165 article-title: In situ bioremediation publication-title: Adv. Appl. Microbiol. doi: 10.1016/S0065-2164(06)61008-3 contributor: fullname: Jørgensen – volume: 26 start-page: 2460 issue: 19 year: 2010 ident: 10.1016/j.gca.2013.08.036_b9010 article-title: Search and clustering orders of magnitude faster than BLAST publication-title: Bioinformatics doi: 10.1093/bioinformatics/btq461 contributor: fullname: Edgar – volume: 50 start-page: 243 year: 1985 ident: 10.1016/j.gca.2013.08.036_b0230 article-title: Studies on cellulose hydrolysis byAcetivibrio cellulolyticus publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.50.2.243-248.1985 contributor: fullname: MacKenzie – volume: 91 start-page: 2850 issue: 10 year: 2010 ident: 10.1016/j.gca.2013.08.036_b9020 article-title: Priming effect: Bridging the gap between terrestrial and aquatic ecology publication-title: Ecology doi: 10.1890/09-1968.1 contributor: fullname: Guenet – volume: 45 start-page: 1250 issue: 4 year: 2011 ident: 10.1016/j.gca.2013.08.036_b0170 article-title: Phase preference by active, acetate-utilizing bacteria at the Rifle, CO Integrated Field Research Challenge Site publication-title: Environ. Sci. Technol. doi: 10.1021/es102893r contributor: fullname: Kerkhof – volume: 6 start-page: 254 year: 2008 ident: 10.1016/j.gca.2013.08.036_b0175 article-title: Carbonate removal from coastal sediments for the determination of organic carbon and its isotopic signatures, δ13C and Δ14C: Comparison of fumigation and direct acidification by hydrochloric acid publication-title: Limnol. Oceanogr. Methods doi: 10.4319/lom.2008.6.254 contributor: fullname: Komada – volume: 2 start-page: 274 issue: 2 year: 2009 ident: 10.1016/j.gca.2013.08.036_b0275 article-title: Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation publication-title: Microb. Biotechnol. doi: 10.1111/j.1751-7915.2009.00087.x contributor: fullname: Scheibe – volume: 404 start-page: 19 issue: 1 year: 2000 ident: 10.1016/j.gca.2013.08.036_b0180 article-title: On-line monitoring of kraft pulping liquors with a valveless flow injection-capillary electrophoresis system publication-title: Anal. Chim. Acta doi: 10.1016/S0003-2670(99)00670-4 contributor: fullname: Kuban – year: 2001 ident: 10.1016/j.gca.2013.08.036_b0270 contributor: fullname: Rittmann – volume: 37 start-page: 1027 year: 2009 ident: 10.1016/j.gca.2013.08.036_b0155 article-title: Cellular energy conservation and the rate of microbial sulfate reduction publication-title: Geology doi: 10.1130/G30185A.1 contributor: fullname: Jin – volume: 81 start-page: 188 issue: 1 year: 2012 ident: 10.1016/j.gca.2013.08.036_b0115 article-title: High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment publication-title: FEMS Microbiol. Ecol. doi: 10.1111/j.1574-6941.2012.01363.x contributor: fullname: Handley – volume: 69 start-page: 5884 year: 2003 ident: 10.1016/j.gca.2013.08.036_b0005 article-title: Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.69.10.5884-5891.2003 contributor: fullname: Anderson – volume: 10 start-page: 171 year: 2007 ident: 10.1016/j.gca.2013.08.036_b0050 article-title: Plumbing the global carbon cycle: Integrating inland waters into the terrestrial carbon budget publication-title: Ecosystems doi: 10.1007/s10021-006-9013-8 contributor: fullname: Cole – volume: 60 start-page: 2802 year: 1994 ident: 10.1016/j.gca.2013.08.036_b0105 article-title: Isolation, characterization and distribution of denitrifying toluene degraders from a variety of habitats publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.60.8.2802-2810.1994 contributor: fullname: Fries – volume: 139 start-page: 485 year: 2009 ident: 10.1016/j.gca.2013.08.036_b0150 article-title: Induction of intestinal Th17 cells by segmented filamentous bacteria publication-title: Cell doi: 10.1016/j.cell.2009.09.033 contributor: fullname: Ivanov – volume: 28 start-page: 519 year: 2011 ident: 10.1016/j.gca.2013.08.036_b0340 article-title: Acetate availability and its influence on sustainable bioremediation of uranium-contaminated groundwater publication-title: Geomicrobiol J. doi: 10.1080/01490451.2010.520074 contributor: fullname: Williams – start-page: 115 year: 1991 ident: 10.1016/j.gca.2013.08.036_b9030 article-title: 16S/23S rRNA sequencing contributor: fullname: Lane – volume: 44 start-page: 623 year: 1998 ident: 10.1016/j.gca.2013.08.036_b0185 article-title: Feeding behavior and grazing impacts of a Euplotes sp. on attached bacteria publication-title: Can. J. Microbiol. doi: 10.1139/cjm-44-7-623 contributor: fullname: Lawrence |
SSID | ssj0007550 |
Score | 2.223719 |
Snippet | Here we report a combined analysis of carbon mass balance based on isotopic labeling and microbiological characterization during organic carbon stimulated... |
SourceID | proquest crossref elsevier |
SourceType | Aggregation Database Publisher |
StartPage | 394 |
SubjectTerms | Azoarcus Bacteria Carbon Communities Cycles Dynamical systems Dynamics Euplotes Geobacter Microorganisms Nutrients Planococcus |
Title | A large column analog experiment of stable isotope variations during reactive transport: II. Carbon mass balance, microbial community structure and predation |
URI | https://dx.doi.org/10.1016/j.gca.2013.08.036 https://search.proquest.com/docview/1506384637 https://search.proquest.com/docview/1709791770 |
Volume | 124 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LS8QwEA66IngRn_hmBE9idbtpk9bbsqi7ip4UvIW8Vla0XdYqePGf-F-dJK2iiAcvhZaWhkzy5ctk5htC9miaDTux1pFUqh0lytJIIXPGGY-Lb24yw7wr-_KK9W-S89v0dor0mlwYF1ZZY3_AdI_W9ZOjujePxqORy_GNGXeKc9QPQ8ThGVyOkqRFZrqDi_7VJyDzNA2ZKDGL3AfN4aYP87rTTn0opl7I0ws1_7o8_QBqv_qcLpD5mjZCN7RskUzZYonMnvmyvK_L5L0LDy6kG7QDmwJk4Xwy8CXfD-UQkAeqBwujp7IqxxZecJcc3HUQchUB-aNHP6gaxfNjGAwOoScnqizgEXk2KBcKqe0BPI68hBM2Socck-oVghjt88RiAwyMJzYUbFohN6cn171-VBdeiCTNWBUpaphOKOfMSKQgqatmpIdDSzOe4xaN4W48Zx0TU5kqi5O-ozgaAKmPTXLdwRm_SlpFWdg1AjmLjVEGWZSkTtxPxjY3BqEtw4s26TrZb_pbjIO-hmgCz-4FGkc44whXKpOydZI0FhHfBolA_P_rs93GegInjzsRkYUtn5-Ek1ekyMAo_-Md3s45bmp5e-N_v98kc3iXBL_NFmmhKew2MplK7ZDpw7d4px6vH7c488Q |
link.rule.ids | 315,786,790,4521,24144,27955,27956,45618,45712 |
linkProvider | Elsevier |
linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1NT9wwELUQVQWXqhQQtLQMUk8Vgc06sRNuaAXsUuAEEjfLX4u2gmS1BCQu_BP-KzN2IkSFOHDJIR-K5bGfn8czbxj7zfNi3E-tTbQxvSQznicGmTPOeFx8S1c4EVzZp2dieJEdX-aXc2zQ5cJQWGWL_RHTA1q3d3bb3tydTiaU45sKSYpzPAxDxOFPxAYormvn8SXOQ-Z5zENJRUKvd0ebIcjrypL2UMqDjGeQaX5zcfoPpsPac_iVfWlJI-zHdi2xOV99Y5-PQlHeh2X2tA_XFNANlqCmAl2RRwZexPuhHgOyQHPtYXJbN_XUwz3ukaOzDmKmIiB7DNgHTad3vgej0Q4M9MzUFdwgywZDgZDWb8PNJAg4YaNszDBpHiBK0d7NPDbAwXTmY7mmFXZxeHA-GCZt2YVE80I0ieFO2IxLKZxGApJTLSM7HnteyBI3aAL34qXou5Tr3Hic8n0jsfuR-PistH2c76tsvqorv8agFKlzxiGH0pyk_XTqS-cQ2Aq8WJevsz9df6tpVNdQXdjZP4XGUWQcRYUyuVhnWWcR9WqIKET_9z7b6qyncOrQeYiufH13q0hckSP_4vKdd2SvlLillb3vH_v9JlsYnp-eqJPR2d8fbBGfZNGDs8Hm0Sz-J3KaxvwKY_YZ5Sj0mQ |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=A+large+column+analog+experiment+of+stable+isotope+variations+during+reactive+transport%3A+II.+Carbon+mass+balance%2C+microbial+community+structure+and+predation&rft.jtitle=Geochimica+et+cosmochimica+acta&rft.au=Druhan%2C+Jennifer+L.&rft.au=Bill%2C+Markus&rft.au=Lim%2C+HsiaoChien&rft.au=Wu%2C+Cindy&rft.date=2014-01-01&rft.pub=Elsevier+Ltd&rft.issn=0016-7037&rft.eissn=1872-9533&rft.volume=124&rft.spage=394&rft.epage=409&rft_id=info:doi/10.1016%2Fj.gca.2013.08.036&rft.externalDocID=S0016703713004882 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0016-7037&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0016-7037&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0016-7037&client=summon |