Cleavable Biotin Probes for Labeling of Biomolecules via Azide−Alkyne Cycloaddition
The azide−alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling experiments, e.g., in proteomic studies involving affinity purification and mass spectrometry, it is convenient to use cleavable probes that allow rel...
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Published in | Journal of the American Chemical Society Vol. 132; no. 51; pp. 18351 - 18360 |
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Main Authors | , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
WASHINGTON
American Chemical Society
29.12.2010
Amer Chemical Soc |
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Abstract | The azide−alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling experiments, e.g., in proteomic studies involving affinity purification and mass spectrometry, it is convenient to use cleavable probes that allow release of labeled biomolecules under mild conditions. Five cleavable biotin probes are described for use in labeling of proteins and other biomolecules via azide−alkyne cycloaddition. Subsequent to conjugation with metabolically labeled protein, these probes are subject to cleavage with either 50 mM Na2S2O4, 2% HOCH2CH2SH, 10% HCO2H, 95% CF3CO2H, or irradiation at 365 nm. Most strikingly, a probe constructed around a dialkoxydiphenylsilane (DADPS) linker was found to be cleaved efficiently when treated with 10% HCO2H for 0.5 h. A model green fluorescent protein was used to demonstrate that the DADPS probe undergoes highly selective conjugation and leaves a small (143 Da) mass tag on the labeled protein after cleavage. These features make the DADPS probe especially attractive for use in biomolecular labeling and proteomic studies. |
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AbstractList | The azide−alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling experiments, e.g., in proteomic studies involving affinity purification and mass spectrometry, it is convenient to use cleavable probes that allow release of labeled biomolecules under mild conditions. Five cleavable biotin probes are described for use in labeling of proteins and other biomolecules via azide−alkyne cycloaddition. Subsequent to conjugation with metabolically labeled protein, these probes are subject to cleavage with either 50 mM Na2S2O4, 2% HOCH2CH2SH, 10% HCO2H, 95% CF3CO2H, or irradiation at 365 nm. Most strikingly, a probe constructed around a dialkoxydiphenylsilane (DADPS) linker was found to be cleaved efficiently when treated with 10% HCO2H for 0.5 h. A model green fluorescent protein was used to demonstrate that the DADPS probe undergoes highly selective conjugation and leaves a small (143 Da) mass tag on the labeled protein after cleavage. These features make the DADPS probe especially attractive for use in biomolecular labeling and proteomic studies. The azide-alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling experiments, e.g., in proteomic studies involving affinity purification and mass spectrometry, it is convenient to use cleavable probes that allow release of labeled biomolecules under mild conditions. Five cleavable biotin probes are described for use in labeling of proteins and other biomolecules via azide-alkyne cycloaddition. Subsequent to conjugation with metabolically labeled protein, these probes are subject to cleavage with either 50 mM Na(2)S(2)O(4), 2% HOCH(2)CH(2)SH, 10% HCO(2)H, 95% CF(3)CO(2)H, or irradiation at 365 nm. Most strikingly, a probe constructed around a dialkoxydiphenylsilane (DADPS) linker was found to be cleaved efficiently when treated with 10% HCO(2)H for 0.5 h. A model green fluorescent protein was used to demonstrate that the DADPS probe undergoes highly selective conjugation and leaves a small (143 Da) mass tag on the labeled protein after cleavage. These features make the DADPS probe especially attractive for use in biomolecular labeling and proteomic studies.The azide-alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling experiments, e.g., in proteomic studies involving affinity purification and mass spectrometry, it is convenient to use cleavable probes that allow release of labeled biomolecules under mild conditions. Five cleavable biotin probes are described for use in labeling of proteins and other biomolecules via azide-alkyne cycloaddition. Subsequent to conjugation with metabolically labeled protein, these probes are subject to cleavage with either 50 mM Na(2)S(2)O(4), 2% HOCH(2)CH(2)SH, 10% HCO(2)H, 95% CF(3)CO(2)H, or irradiation at 365 nm. Most strikingly, a probe constructed around a dialkoxydiphenylsilane (DADPS) linker was found to be cleaved efficiently when treated with 10% HCO(2)H for 0.5 h. A model green fluorescent protein was used to demonstrate that the DADPS probe undergoes highly selective conjugation and leaves a small (143 Da) mass tag on the labeled protein after cleavage. These features make the DADPS probe especially attractive for use in biomolecular labeling and proteomic studies. The azide-alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling experiments, e.g., in proteomic studies involving affinity purification and mass spectrometry, it is convenient to use cleavable probes that allow release of labeled biomolecules under mild conditions. Five cleavable biotin probes are described for use in labeling of proteins and other biomolecules via azide-alkyne cycloaddition. Subsequent to conjugation with metabolically labeled protein, these probes are subject to cleavage with either 50 mM Na2S2O4, 2% HOCH2CH2SH, 10% HCO2H, 95% CF3CO2H, or irradiation at 365 nm. Most strikingly, a probe constructed around a dialkoxydiphenylsilane (DADPS) linker was found to be cleaved efficiently when treated with 10% HCO2H for 0.5 h. A model green fluorescent protein was used to demonstrate that the DADPS probe undergoes highly selective conjugation and leaves a small (143 Da) mass tag on the labeled protein after cleavage. These features make the DADPS probe especially attractive for use in biomolecular labeling and proteomic studies. The azide-alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling experiments, e.g., in proteomic studies involving affinity purification and mass spectrometry, it is convenient to use cleavable probes that allow release of labeled biomolecules under mild conditions. Five cleavable biotin probes are described for use in labeling of proteins and other biomolecules via the azide – alkyne cycloaddition. Subsequent to conjugation with metabolically labeled protein, these probes are subject to cleavage with either 50 mM Na 2 S 2 O 4 , 2% HOCH 2 CH 2 SH, 10% HCO 2 H, 95% CF 3 CO 2 H, or irradiation at 365 nm. Most strikingly, a probe constructed around a dialkoxydiphenylsilane (DADPS) linker was found to be cleaved efficiently when treated with 10% HCO 2 H for 0.5 h. A model GFP protein was used to demonstrate that the DADPS probe undergoes highly selective conjugation and leaves a small (143 Da) mass tag on the labeled protein after cleavage. These features make the DADPS probe especially attractive for use in biomolecular labeling and proteomic studies. The azide-alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling experiments, e.g., in proteomic studies involving affinity purification and mass spectrometry, it is convenient to use cleavable probes that allow release of labeled biomolecules under mild conditions. Five cleavable biotin probes are described for use in labeling of proteins and other biomolecules via azide-alkyne cycloaddition. Subsequent to conjugation with metabolically labeled protein, these probes are subject to cleavage with either 50 mM Na(2)S(2)O(4), 2% HOCH(2)CH(2)SH, 10% HCO(2)H, 95% CF(3)CO(2)H, or irradiation at 365 nm. Most strikingly, a probe constructed around a dialkoxydiphenylsilane (DADPS) linker was found to be cleaved efficiently when treated with 10% HCO(2)H for 0.5 h. A model green fluorescent protein was used to demonstrate that the DADPS probe undergoes highly selective conjugation and leaves a small (143 Da) mass tag on the labeled protein after cleavage. These features make the DADPS probe especially attractive for use in biomolecular labeling and proteomic studies. |
Author | Schuman, Erin M Hodas, Jennifer J. L Szychowski, Janek Mahdavi, Alborz Dieterich, Daniela C Tirrell, David A Ngo, John T Landgraf, Peter Bagert, John D |
AuthorAffiliation | 2 Division of Biology, California Institute of Technology, 1200 E. California Blvd., MC 114-96, Pasadena, CA, 91125, USA 4 Max Planck Institute for Brain Research, Deutschordenstraße 46, 60528 Frankfurt, Germany 1 Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E. California Blvd., MC 210-41, Pasadena, CA, 91125, USA 3 Leibniz-Institute for Neurobiology, Research Group Neuralomics, Brenneckestraße 6, 39118 Magdeburg, Germany |
AuthorAffiliation_xml | – name: 1 Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E. California Blvd., MC 210-41, Pasadena, CA, 91125, USA – name: 3 Leibniz-Institute for Neurobiology, Research Group Neuralomics, Brenneckestraße 6, 39118 Magdeburg, Germany – name: 4 Max Planck Institute for Brain Research, Deutschordenstraße 46, 60528 Frankfurt, Germany – name: 2 Division of Biology, California Institute of Technology, 1200 E. California Blvd., MC 114-96, Pasadena, CA, 91125, USA |
Author_xml | – sequence: 1 givenname: Janek surname: Szychowski fullname: Szychowski, Janek – sequence: 2 givenname: Alborz surname: Mahdavi fullname: Mahdavi, Alborz – sequence: 3 givenname: Jennifer J. L surname: Hodas fullname: Hodas, Jennifer J. L – sequence: 4 givenname: John D surname: Bagert fullname: Bagert, John D – sequence: 5 givenname: John T surname: Ngo fullname: Ngo, John T – sequence: 6 givenname: Peter surname: Landgraf fullname: Landgraf, Peter – sequence: 7 givenname: Daniela C surname: Dieterich fullname: Dieterich, Daniela C – sequence: 8 givenname: Erin M surname: Schuman fullname: Schuman, Erin M – sequence: 9 givenname: David A surname: Tirrell fullname: Tirrell, David A email: tirrell@caltech.edu |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/21141861$$D View this record in MEDLINE/PubMed |
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Copyright | Copyright © 2010 American Chemical Society |
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Keywords | REPORTER ANALOGS RECOMBINANT PROTEINS IN-VIVO SOLID-PHASE CHEMISTRY LIGATION TERMINAL ALKYNES IDENTIFICATION PROTEOMES |
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PublicationDateYYYYMMDD | 2010-12-29 |
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PublicationDecade | 2010 |
PublicationPlace | WASHINGTON |
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PublicationTitle | Journal of the American Chemical Society |
PublicationTitleAbbrev | J AM CHEM SOC |
PublicationTitleAlternate | J. Am. Chem. Soc |
PublicationYear | 2010 |
Publisher | American Chemical Society Amer Chemical Soc |
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Snippet | The azide−alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling... The azide-alkyne cycloaddition provides a powerful tool for bio-orthogonal labeling of proteins, nucleic acids, glycans, and lipids. In some labeling... |
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SubjectTerms | Alkynes - chemistry Azides - chemistry Biotin - chemistry Chemistry Chemistry, Multidisciplinary Cyclization Dapsone Green Fluorescent Proteins - chemistry Molecular Probes - chemical synthesis Molecular Probes - chemistry Physical Sciences Protein Structure, Secondary Proteins - chemistry Science & Technology |
Title | Cleavable Biotin Probes for Labeling of Biomolecules via Azide−Alkyne Cycloaddition |
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