Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection
Bachas, Costa, Hodzic, Jasmina, van der Mijn, Johannes C, Stoepker, Chantal, Verheul, Henk M W, Wolthuis, Rob M F, Felley-Bosco, Emanuela, van Wieringen, Wessel N, van Beusechem, Victor W, Brakenhoff, Ruud H, de Menezes, Renée X
Published in BMC bioinformatics (20.08.2018)
Published in BMC bioinformatics (20.08.2018)
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Journal Article
Transcriptional and metabolic remodeling in clear cell renal cell carcinoma caused by ATF4 activation and the integrated stress response (ISR)
Mijn, Johannes C., Chen, Qiuying, Laursen, Kristian B., Khani, Francesca, Wang, Xiaofei, Dorsaint, Princesca, Sboner, Andrea, Gross, Steven S., Nanus, David M., Gudas, Lorraine J.
Published in Molecular carcinogenesis (01.09.2022)
Published in Molecular carcinogenesis (01.09.2022)
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Journal Article
NDUFA4L2 reduces mitochondrial respiration resulting in defective lysosomal trafficking in clear cell renal cell carcinoma
Kubala, Jaclyn M., Laursen, Kristian B., Schreiner, Ryan, Williams, Ryan M., van der Mijn, Johannes C., Crowley, Michael J., Mongan, Nigel P., Nanus, David M., Heller, Daniel A., Gudas, Lorraine J.
Published in Cancer biology & therapy (31.12.2023)
Published in Cancer biology & therapy (31.12.2023)
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Journal Article
Novel genetically engineered mouse models for clear cell renal cell carcinoma
van der Mijn, Johannes C., Laursen, Kristian B., Fu, Leiping, Khani, Francesca, Dow, Lukas E., Nowak, Dawid G., Chen, Qiuying, Gross, Steven S., Nanus, David M., Gudas, Lorraine J.
Published in Scientific reports (22.05.2023)
Published in Scientific reports (22.05.2023)
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Journal Article
NCI 6896: a phase I trial of vorinostat (SAHA) and isotretinoin (13-cis retinoic acid) in the treatment of patients with advanced renal cell carcinoma
Molina, Ana M., van der Mijn, Johannes C., Christos, Paul, Wright, John, Thomas, Charlene, Dutcher, Janice P., Nanus, David M., Tagawa, Scott T., Gudas, Lorraine J.
Published in Investigational new drugs (01.10.2020)
Published in Investigational new drugs (01.10.2020)
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Journal Article
Validation of risk factors for recurrence of renal cell carcinoma: Results from a large single-institution series
van der Mijn, Johannes C, Al Hussein Al Awamlh, Bashir, Islam Khan, Aleem, Posada-Calderon, Lina, Oromendia, Clara, Fainberg, Jonathan, Alshak, Mark, Elahjji, Rahmi, Pierce, Hudson, Taylor, Benjamin, Gudas, Lorraine J, Nanus, David M, Molina, Ana M, Del Pizzo, Joseph, Scherr, Douglas S
Published in PloS one (09.12.2019)
Published in PloS one (09.12.2019)
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Journal Article
Combined Metabolomics and Genome-Wide Transcriptomics Analyses Show Multiple HIF1α-Induced Changes in Lipid Metabolism in Early Stage Clear Cell Renal Cell Carcinoma
van der Mijn, Johannes C., Fu, Leiping, Khani, Francesca, Zhang, Tuo, Molina, Ana M., Barbieri, Christopher E., Chen, Qiuying, Gross, Steven S., Gudas, Lorraine J., Nanus, David M.
Published in Translational oncology (01.02.2020)
Published in Translational oncology (01.02.2020)
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Journal Article
Sunitinib activates Axl signaling in renal cell cancer
van der Mijn, Johannes C., Broxterman, Henk J., Knol, Jaco C., Piersma, Sander R., De Haas, Richard R., Dekker, Henk, Pham, Thang V., Van Beusechem, Victor W., Halmos, Balazs, Mier, James W., Jiménez, Connie R., Verheul, Henk M.W.
Published in International journal of cancer (15.06.2016)
Published in International journal of cancer (15.06.2016)
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Journal Article
The genomic landscape of metastatic clear cell renal cell carcinoma after systemic therapy
Mijn, Johannes C., Eng, Kenneth W., Chandra, Pooja, Fernandez, Evan, Ramazanoglu, Sinan, Sigaras, Alexandros, Oromendia, Clara, Gudas, Lorraine J., Tagawa, Scott T., Nanus, David M., Faltas, Bishoy F., Beltran, Himisha, Sternberg, Cora N., Elemento, Olivier, Sboner, Andrea, Mosquera, Juan Miguel, Molina, Ana M.
Published in Molecular oncology (01.06.2022)
Published in Molecular oncology (01.06.2022)
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Journal Article
Evaluation of different phospho-tyrosine antibodies for label-free phosphoproteomics
van der Mijn, Johannes C., Labots, Mariette, Piersma, Sander R., Pham, Thang V., Knol, Jaco C., Broxterman, Henk J., Verheul, Henk M., Jiménez, Connie R.
Published in Journal of proteomics (08.09.2015)
Published in Journal of proteomics (08.09.2015)
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Journal Article
Phosphotyrosine-based-phosphoproteomics scaled-down to biopsy level for analysis of individual tumor biology and treatment selection
Labots, Mariette, van der Mijn, Johannes C., Beekhof, Robin, Piersma, Sander R., de Goeij-de Haas, Richard R., Pham, Thang V., Knol, Jaco C., Dekker, Henk, van Grieken, Nicole C.T., Verheul, Henk M.W., Jiménez, Connie R.
Published in Journal of proteomics (06.06.2017)
Published in Journal of proteomics (06.06.2017)
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Journal Article
Indications and Outcomes for Deferred Cytoreductive Nephrectomy Following Immune Checkpoint Inhibitor Combination Therapy: Can Systemic Therapy be Withdrawn in Patients with No Evidence of Disease?
Fransen van de Putte, Elisabeth E., van den Brink, Luna, Mansour, Mohamed A., van der Mijn, Johannes C., Wilgenhof, Sofie, van Thienen, Johannes V., Haanen, John B.A.G., Boleti, Ekaterini, Powles, Thomas, Zondervan, Patricia J., Graafland, Niels M., Bex, Axel
Published in European urology open science (Online) (01.09.2023)
Published in European urology open science (Online) (01.09.2023)
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Journal Article
Evaluation of a tyrosine kinase peptide microarray for tyrosine kinase inhibitor therapy selection in cancer
Labots, Mariette, Gotink, Kristy J, Dekker, Henk, Azijli, Kaamar, van der Mijn, Johannes C, Huijts, Charlotte M, Piersma, Sander R, Jiménez, Connie R, Verheul, Henk M W
Published in Experimental & molecular medicine (16.12.2016)
Published in Experimental & molecular medicine (16.12.2016)
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Journal Article
Predictive biomarkers in renal cell cancer: Insights in drug resistance mechanisms
van der Mijn, Johannes C, Mier, James W, Broxterman, Henk J, Verheul, Henk M
Published in Drug resistance updates (01.10.2014)
Published in Drug resistance updates (01.10.2014)
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Journal Article
Analysis of AKT and ERK1/2 protein kinases in extracellular vesicles isolated from blood of patients with cancer
van der Mijn, Johannes C., Sol, Nik, Mellema, Wouter, Jimenez, Connie R., Piersma, Sander R., Dekker, Henk, Schutte, Lisette M., Smit, Egbert F., Broxterman, Henk J., Skog, Johan, Tannous, Bakhos A., Wurdinger, Thomas, Verheul, Henk M. W.
Published in Journal of extracellular vesicles (01.01.2014)
Published in Journal of extracellular vesicles (01.01.2014)
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Journal Article
Association of Smoking and Death from Genitourinary Malignancies: Analysis of the National Longitudinal Mortality Study
Al Hussein Al Awamlh, Bashir, Shoag, Jonathan E, Ravikumar, Vaishali, Posada, Lina, Taylor, Benjamin L, van der Mijn, Johannes C, Khan, Aleem I, Fainberg, Jonathan, Al Hussein Alawamleh, Omar, Scherr, Douglas S
Published in The Journal of urology (01.12.2019)
Published in The Journal of urology (01.12.2019)
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Journal Article
Irinotecan-Induced Dysarthria
Dressel, Albertine J., van der Mijn, Johannes C., Aalders, IJke J., Rinkel, Rico N.P.M., van der Vliet, Hans J.
Published in Case reports in oncology (01.01.2012)
Published in Case reports in oncology (01.01.2012)
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Journal Article
Novel drugs that target the metabolic reprogramming in renal cell cancer
van der Mijn, Johannes C, Panka, David J, Geissler, Andrew K, Verheul, Henk M, Mier, James W
Published in Cancer & metabolism (13.07.2016)
Published in Cancer & metabolism (13.07.2016)
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Journal Article
Selection of Protein Kinase Inhibitors Based on Tumor Tissue Kinase Activity Profiles in Patients with Refractory Solid Malignancies: An Interventional Molecular Profiling Study
Labots, Mariette, Van der Mijn, Johannes C., Dekker, Henk, Ruijter, Rita, Pham, Thang V., Van der Vliet, Hans J., Van der Hoeven, Jacobus J.M., Meijer, Gerrit A., Verheul, Henk M.W.
Published in The oncologist (Dayton, Ohio) (01.10.2018)
Published in The oncologist (Dayton, Ohio) (01.10.2018)
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