Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
Smits, Willem K., Vermeulen, Carlo, Hagelaar, Rico, Kimura, Shunsuke, Vroegindeweij, Eric M., Buijs-Gladdines, Jessica G.C.A.M., van de Geer, Ellen, Verstegen, Marjon J.A.M., Splinter, Erik, van Reijmersdal, Simon V., Buijs, Arjan, Galjart, Niels, van Eyndhoven, Winfried, van Min, Max, Kuiper, Roland, Kemmeren, Patrick, Mullighan, Charles G., de Laat, Wouter, Meijerink, Jules P.P.
Published in Cell reports (Cambridge) (25.04.2023)
Published in Cell reports (Cambridge) (25.04.2023)
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Kaposiform hemangioendothelioma and tufted angioma – (epi)genetic analysis including genome-wide methylation profiling
Ten Broek, Roel W., Koelsche, Christian, Eijkelenboom, Astrid, Mentzel, Thomas, Creytens, David, Vokuhl, Christian, van Gorp, Joost M., Versleijen-Jonkers, Yvonne M., van der Vleuten, Carine J., Kemmeren, Patrick, van de Geer, Ellen, von Deimling, Andreas, Flucke, Uta
Published in Annals of diagnostic pathology (01.02.2020)
Published in Annals of diagnostic pathology (01.02.2020)
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Trecode: A FAIR Eco-System for the Analysis and Archiving of Omics Data in a Combined Diagnostic and Research Setting
Kerstens, Hindrik HD, Hehir-Kwa, Jayne Y, van de Geer, Ellen, van Run, Chris, Badloe, Shashi, Janse, Alex, Baker-Hernandez, John, de Vos, Sam, van der Leest, Douwe, Verwiel, Eugène TP, Tops, Bastiaan BJ, Kemmeren, Patrick
Published in BioMedInformatics (01.03.2023)
Published in BioMedInformatics (01.03.2023)
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DNA Methylation Profiling Identifies Distinct Clusters in Angiosarcomas
Weidema, Marije E, van de Geer, Ellen, Koelsche, Christian, Desar, Ingrid M E, Kemmeren, Patrick, Hillebrandt-Roeffen, Melissa H S, Ho, Vincent K Y, van der Graaf, Winette T A, Versleijen-Jonkers, Yvonne M H, von Deimling, Andreas, Flucke, Uta E
Published in Clinical cancer research (01.01.2020)
Published in Clinical cancer research (01.01.2020)
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Elevated Enhancer-Oncogene Contacts and Higher Oncogene Expression Levels By Recurrent CTCF inactivating Mutations in T Cell Acute Lymphoblastic Leukemia
Smits, Willem K., Vermeulen, Carlo, Hagelaar, Rico, Kimura, Shunsuke, Vroegindeweij, Eric, Buijs-Gladdines, Jessica G.C.A.M., Van De Geer, Ellen, Verstegen, Marjon J.A.M., Splinter, Erik, van Reijmersdal, Simon V., Buijs, Arjan, Galjart, Niels, Van Eyndhoven, Winfried, Van Min, Max Jan, Kuiper, Roland P, Kemmeren, Patrick, Mullighan, Charles G., De Laat, Wouter, Meijerink, Jules P.P.
Published in Blood (23.11.2021)
Published in Blood (23.11.2021)
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Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software
Decamps, Clémentine, Privé, Florian, Bacher, Raphael, Jost, Daniel, Waguet, Arthur, Houseman, Eugene Andres, Lurie, Eugene, Lutsik, Pavlo, Milosavljevic, Aleksandar, Scherer, Michael, Blum, Michael G B, Richard, Magali
Published in BMC bioinformatics (13.01.2020)
Published in BMC bioinformatics (13.01.2020)
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Improved Gene Fusion Detection in Childhood Cancer Diagnostics Using RNA Sequencing
Hehir-Kwa, Jayne Y, Koudijs, Marco J, Verwiel, Eugene T P, Kester, Lennart A, van Tuil, Marc, Strengman, Eric, Buijs, Arjan, Kranendonk, Mariëtte E G, Hiemcke-Jiwa, Laura S, de Haas, Valerie, van de Geer, Ellen, de Leng, Wendy, van der Lugt, Jasper, Lijnzaad, Philip, Holstege, Frank C P, Kemmeren, Patrick, Tops, Bastiaan B J
Published in JCO precision oncology (01.01.2022)
Published in JCO precision oncology (01.01.2022)
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Trecode: a FAIR eco-system for the analysis and archiving of omics data in a combined diagnostic and research setting
Hindrik Hd Kerstens, Hehir-Kwa, Jayne Y, Van De Geer, Ellen, Chris Van Run, Verwiel, Eugène Tp, Douwe Van Der Leest, Tops, Bastiaan Bj, Kemmeren, Patrick
Published in bioRxiv (16.11.2020)
Published in bioRxiv (16.11.2020)
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