A sensitive assay for virus discovery in respiratory clinical samples
de Vries, Michel, Deijs, Martin, Canuti, Marta, van Schaik, Barbera D C, Faria, Nuno R, van de Garde, Martijn D B, Jachimowski, Loes C M, Jebbink, Maarten F, Jakobs, Marja, Luyf, Angela C M, Coenjaerts, Frank E J, Claas, Eric C J, Molenkamp, Richard, Koekkoek, Sylvie M, Lammens, Christine, Leus, Frank, Goossens, Herman, Ieven, Margareta, Baas, Frank, van der Hoek, Lia
Published in PloS one (24.01.2011)
Published in PloS one (24.01.2011)
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A public antibody class recognizes an S2 epitope exposed on open conformations of SARS-CoV-2 spike
Claireaux, Mathieu, Caniels, Tom G., de Gast, Marlon, Han, Julianna, Guerra, Denise, Kerster, Gius, van Schaik, Barbera D. C., Jongejan, Aldo, Schriek, Angela I., Grobben, Marloes, Brouwer, Philip J. M., van der Straten, Karlijn, Aldon, Yoann, Capella-Pujol, Joan, Snitselaar, Jonne L., Olijhoek, Wouter, Aartse, Aafke, Brinkkemper, Mitch, Bontjer, Ilja, Burger, Judith A., Poniman, Meliawati, Bijl, Tom P. L., Torres, Jonathan L., Copps, Jeffrey, Martin, Isabel Cuella, de Taeye, Steven W., de Bree, Godelieve J., Ward, Andrew B., Sliepen, Kwinten, van Kampen, Antoine H. C., Moerland, Perry D., Sanders, Rogier W., van Gils, Marit J.
Published in Nature communications (04.08.2022)
Published in Nature communications (04.08.2022)
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ENCORE: a practical implementation to improve reproducibility and transparency of computational research
van Kampen, Antoine H. C., Mahamune, Utkarsh, Jongejan, Aldo, van Schaik, Barbera D. C., Balashova, Daria, Lashgari, Danial, Pras-Raves, Mia, Wever, Eric J. M., Dane, Adrie D., García-Valiente, Rodrigo, Moerland, Perry D.
Published in Nature communications (16.09.2024)
Published in Nature communications (16.09.2024)
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Identification of IOMA-class neutralizing antibodies targeting the CD4-binding site on the HIV-1 envelope glycoprotein
van Schooten, Jelle, Farokhi, Elinaz, Schorcht, Anna, van den Kerkhof, Tom L. G. M., Gao, Hongmei, van der Woude, Patricia, Burger, Judith A., Meesters, Tim G. Rijkhold, Bijl, Tom, Ghalaiyini, Riham, Turner, Hannah L., Dorning, Jessica, van Schaik, Barbera D. C., van Kampen, Antoine H. C., Labranche, Celia C., Stanfield, Robyn L., Sok, Devin, Montefiori, David C., Burton, Dennis R., Seaman, Michael S., Ozorowski, Gabriel, Wilson, Ian A., Sanders, Rogier W., Ward, Andrew B., van Gils, Marit J.
Published in Nature communications (03.08.2022)
Published in Nature communications (03.08.2022)
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Systematic evaluation of B-cell clonal family inference approaches
Balashova, Daria, van Schaik, Barbera D C, Stratigopoulou, Maria, Guikema, Jeroen E J, Caniels, Tom G, Claireaux, Mathieu, van Gils, Marit J, Musters, Anne, Anang, Dornatien C, de Vries, Niek, Greiff, Victor, van Kampen, Antoine H C
Published in BMC immunology (08.02.2024)
Published in BMC immunology (08.02.2024)
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Somatic Variation of T-Cell Receptor Genes Strongly Associate with HLA Class Restriction
Klarenbeek, Paul L, Doorenspleet, Marieke E, Esveldt, Rebecca E E, van Schaik, Barbera D C, Lardy, Neubury, van Kampen, Antoine H C, Tak, Paul P, Plenge, Robert M, Baas, Frank, de Bakker, Paul I W, de Vries, Niek
Published in PloS one (30.10.2015)
Published in PloS one (30.10.2015)
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Proteogenomic analysis of the autoreactive B cell repertoire in blood and tissues of patients with Sjögren’s syndrome
Broeren, Mathijs G A, Wang, Jing J, Balzaretti, Giulia, Groenen, Patricia J T A, van Schaik, Barbera D C, Chataway, Tim, Kaffa, Charlotte, Bervoets, Sander, Hebeda, Konnie M, Bounova, Gergana, Pruijn, Ger J M, Gordon, Thomas P, De Vries, Niek, Thurlings, Rogier M
Published in Annals of the rheumatic diseases (01.05.2022)
Published in Annals of the rheumatic diseases (01.05.2022)
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In Rheumatoid Arthritis, Synovitis at Different Inflammatory Sites Is Dominated by Shared but Patient-Specific T Cell Clones
Musters, Anne, Klarenbeek, Paul L, Doorenspleet, Marieke E, Balzaretti, Giulia, Esveldt, Rebecca E E, van Schaik, Barbera D C, Jongejan, Aldo, Tas, Sander W, van Kampen, Antoine H C, Baas, Frank, de Vries, Niek
Published in The Journal of immunology (1950) (15.07.2018)
Published in The Journal of immunology (1950) (15.07.2018)
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B-cell receptor profiling before and after IVIG monotherapy in newly diagnosed idiopathic inflammatory myopathies
Anang, Dornatien C, Walter, Hannah A W, Lim, Johan, Niewold, Ilse, van der Weele, Linda, Aronica, Eleonora, Eftimov, Filip, Raaphorst, Joost, van Schaik, Barbera D C, van Kampen, Antoine H C, van der Kooi, Anneke J, de Vries, Niek
Published in Rheumatology (Oxford, England) (05.07.2023)
Published in Rheumatology (Oxford, England) (05.07.2023)
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Non-response to rituximab therapy in rheumatoid arthritis is associated with incomplete disruption of the B cell receptor repertoire
Pollastro, Sabrina, Klarenbeek, Paul L, Doorenspleet, Marieke E, van Schaik, Barbera D C, Esveldt, Rebecca E E, Thurlings, Rogier M, Boumans, Maria J H, Gerlag, Danielle M, Tak, Paul P, Vos, Koen, Baas, Frank, van Kampen, Antoine H C, de Vries, Niek
Published in Annals of the rheumatic diseases (01.10.2019)
Published in Annals of the rheumatic diseases (01.10.2019)
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In rheumatoid arthritis inflamed joints share dominant patient-specific B-cell clones
Musters, Anne, Balzaretti, Giulia, van Schaik, Barbera D. C., Jongejan, Aldo, van der Weele, Linda, Tas, Sander W., van Kampen, Antoine H. C., de Vries, Niek
Published in Frontiers in immunology (27.07.2022)
Published in Frontiers in immunology (27.07.2022)
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N -Glycosylation Site Analysis of Citrullinated Antigen-Specific B-Cell Receptors Indicates Alternative Selection Pathways During Autoreactive B-Cell Development
Vergroesen, Rochelle D, Slot, Linda M, van Schaik, Barbera D C, Koning, Marvyn T, Rispens, Theo, van Kampen, Antoine H C, Toes, René E M, Scherer, Hans U
Published in Frontiers in immunology (04.09.2019)
Published in Frontiers in immunology (04.09.2019)
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TCRβ clones in muscle tissue share structural features in patients with idiopathic inflammatory myopathy and are associated with disease activity
Anang, Dornatien C, Walter, Hannah A W, Lim, Johan, Niewold, Ilse T G, van der Weele, Linda, Aronica, Eleonora, Eftimov, Filip, Raaphorst, Joost, van Schaik, Barbera D C, van Kampen, Antoine H C, van der Kooi, Anneke J, de Vries, Niek
Published in Frontiers in immunology (10.01.2024)
Published in Frontiers in immunology (10.01.2024)
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Characterization and Monitoring of Antigen-Responsive T Cell Clones Using T Cell Receptor Gene Expression Analysis
Pollastro, Sabrina, de Bourayne, Marie, Balzaretti, Giulia, Jongejan, Aldo, van Schaik, Barbera D C, Niewold, Ilse T G, van Kampen, Antoine H C, Maillère, Bernard, de Vries, Niek
Published in Frontiers in immunology (19.02.2021)
Published in Frontiers in immunology (19.02.2021)
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Streptococcus pneumoniae Arginine Synthesis Genes Promote Growth and Virulence in Pneumococcal Meningitis
Piet, Jurgen R., Geldhoff, Madelijn, van Schaik, Barbera D. C., Brouwer, Matthijs C., Seron, Mercedes Valls, Jakobs, Marja E., Schipper, Kim, Pannekoek, Yvonne, Zwinderman, Aeilko H., van der Poll, Tom, van Kampen, Antoine H. C., Baas, Frank, van der Ende, Arie, van de Beek, Diederik
Published in The Journal of infectious diseases (01.06.2014)
Published in The Journal of infectious diseases (01.06.2014)
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Computational Model Reveals Limited Correlation between Germinal Center B-Cell Subclone Abundancy and Affinity: Implications for Repertoire Sequencing
Reshetova, Polina, van Schaik, Barbera D C, Klarenbeek, Paul L, Doorenspleet, Marieke E, Esveldt, Rebecca E E, Tak, Paul-Peter, Guikema, Jeroen E J, de Vries, Niek, van Kampen, Antoine H C
Published in Frontiers in immunology (06.03.2017)
Published in Frontiers in immunology (06.03.2017)
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Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome
Van Houdt, Jeroen K J, Nowakowska, Beata Anna, Sousa, Sérgio B, van Schaik, Barbera D C, Seuntjens, Eve, Avonce, Nelson, Sifrim, Alejandro, Abdul-Rahman, Omar A, van den Boogaard, Marie-José H, Bottani, Armand, Castori, Marco, Cormier-Daire, Valérie, Deardorff, Matthew A, Filges, Isabel, Fryer, Alan, Fryns, Jean-Pierre, Gana, Simone, Garavelli, Livia, Gillessen-Kaesbach, Gabriele, Hall, Bryan D, Horn, Denise, Huylebroeck, Danny, Klapecki, Jakub, Krajewska-Walasek, Malgorzata, Kuechler, Alma, Lines, Matthew A, Maas, Saskia, MacDermot, Kay D, McKee, Shane, Magee, Alex, de Man, Stella A, Moreau, Yves, Morice-Picard, Fanny, Obersztyn, Ewa, Pilch, Jacek, Rosser, Elizabeth, Shannon, Nora, Stolte-Dijkstra, Irene, Van Dijck, Patrick, Vilain, Catheline, Vogels, Annick, Wakeling, Emma, Wieczorek, Dagmar, Wilson, Louise, Zuffardi, Orsetta, van Kampen, Antoine H C, Devriendt, Koenraad, Hennekam, Raoul, Vermeesch, Joris Robert
Published in Nature genetics (01.04.2012)
Published in Nature genetics (01.04.2012)
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Human T-cell memory consists mainly of unexpanded clones
Klarenbeek, Paul L, Tak, Paul P, van Schaik, Barbera D.C, Zwinderman, Aeilko H, Jakobs, Marja E, Zhang, Zhuoli, van Kampen, Antoine H.C, van Lier, René A.W, Baas, Frank, de Vries, Niek
Published in Immunology letters (06.09.2010)
Published in Immunology letters (06.09.2010)
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Clonal evolution of CD8+ T cell responses against latent viruses: relationship among phenotype, localization, and function
Remmerswaal, Ester B M, Klarenbeek, Paul L, Alves, Nuno L, Doorenspleet, Marieke E, van Schaik, Barbera D C, Esveldt, Rebecca E E, Idu, Mirza M, van Leeuwen, Ester M M, van der Bom-Baylon, Nelly, van Kampen, Antoine H C, Koch, Sven D, Pircher, Hanspeter, Bemelman, Frederike J, Ten Brinke, Anja, Baas, Frank, Ten Berge, Ineke J M, van Lier, Rene A W, de Vries, Niek
Published in Journal of virology (01.01.2015)
Published in Journal of virology (01.01.2015)
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