FAIRDOMHub: a repository and collaboration environment for sharing systems biology research
Wolstencroft, Katherine, Krebs, Olga, Snoep, Jacky L, Stanford, Natalie J, Bacall, Finn, Golebiewski, Martin, Kuzyakiv, Rostyk, Nguyen, Quyen, Owen, Stuart, Soiland-Reyes, Stian, Straszewski, Jakub, van Niekerk, David D, Williams, Alan R, Malmström, Lars, Rinn, Bernd, Müller, Wolfgang, Goble, Carole
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
Intercellular communication induces glycolytic synchronization waves between individually oscillating cells
Mojica-Benavides, Martin, van Niekerk, David D, Mijalkov, Mite, Snoep, Jacky L, Mehlig, Bernhard, Volpe, Giovanni, Goksör, Mattias, Adiels, Caroline B
Published in Proceedings of the National Academy of Sciences - PNAS (09.02.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (09.02.2021)
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Journal Article
Targeting glycolysis in the malaria parasite Plasmodium falciparum
Niekerk, David D, Penkler, Gerald P, Toit, Francois, Snoep, Jacky L
Published in The FEBS journal (01.02.2016)
Published in The FEBS journal (01.02.2016)
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Journal Article
Sustained glycolytic oscillations in individual isolated yeast cells
Gustavsson, Anna‐Karin, van Niekerk, David D., Adiels, Caroline B., du Preez, Franco B., Goksör, Mattias, Snoep, Jacky L.
Published in The FEBS journal (01.08.2012)
Published in The FEBS journal (01.08.2012)
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Journal Article
From steady‐state to synchronized yeast glycolytic oscillations II: model validation
du Preez, Franco B., van Niekerk, David D., Snoep, Jacky L.
Published in The FEBS journal (01.08.2012)
Published in The FEBS journal (01.08.2012)
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Journal Article
Heterogeneity of glycolytic oscillatory behaviour in individual yeast cells
Gustavsson, Anna-Karin, van Niekerk, David D., Adiels, Caroline B., Goksör, Mattias, Snoep, Jacky L.
Published in FEBS letters (03.01.2014)
Published in FEBS letters (03.01.2014)
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Journal Article
Quantitative analysis of drug effects at the whole-body level: a case study for glucose metabolism in malaria patients
Snoep, Jacky L, Green, Kathleen, Eicher, Johann, Palm, Daniel C, Penkler, Gerald, du Toit, Francois, Walters, Nicolas, Burger, Robert, Westerhoff, Hans V, van Niekerk, David D
Published in Biochemical Society transactions (01.12.2015)
Published in Biochemical Society transactions (01.12.2015)
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Journal Article
A detailed kinetic model of glycolysis in Plasmodium falciparum-infected red blood cells for antimalarial drug target identification
van Niekerk, David D., du Toit, Francois, Green, Kathleen, Palm, Danie, Snoep, Jacky L.
Published in The Journal of biological chemistry (01.09.2023)
Published in The Journal of biological chemistry (01.09.2023)
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Journal Article
The JWS online simulation database
Peters, Martin, Eicher, Johann J, van Niekerk, David D, Waltemath, Dagmar, Snoep, Jacky L
Published in Bioinformatics (Oxford, England) (15.05.2017)
Published in Bioinformatics (Oxford, England) (15.05.2017)
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Journal Article
Is distance from equilibrium a good indicator for a reaction’s flux control?
van Niekerk, David D., Rust, Erik, Bruggeman, Frank, Westerhoff, Hans V., Snoep, Jacky L.
Published in BioSystems (01.10.2023)
Published in BioSystems (01.10.2023)
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Journal Article
Kinetic modelling of glycolytic oscillations
van Niekerk, David D, van Wyk, Morne, Kouril, Theresa, Snoep, Jacky L
Published in Essays in biochemistry (30.04.2024)
Published in Essays in biochemistry (30.04.2024)
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Journal Article
Inhibitor titrations reveal low control of glyceraldehyde 3-phosphate dehydrogenase and high control of hexokinase on glycolytic flux in an aggressive triple-negative breast cancer cell line
Kouril, Theresa, October, Craig, Hollocks, Stephanie, Odendaal, Christoff, van Niekerk, David D., Snoep, Jacky L.
Published in BioSystems (01.09.2023)
Published in BioSystems (01.09.2023)
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Journal Article
Computational modelling of the Δ4 and Δ5 adrenal steroidogenic pathways provides insight into hypocortisolism
Louw, Carla, van Schalkwyk, Erick J., Conradie, Riaan, Louw, Ralie, Engelbrecht, Yolanda, Storbeck, Karl-Heinz, Swart, Amanda C., van Niekerk, David D., Snoep, Jacky L., Swart, Pieter
Published in Molecular and cellular endocrinology (15.04.2021)
Published in Molecular and cellular endocrinology (15.04.2021)
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Journal Article
Phosphofructokinase controls the acetaldehyde-induced phase shift in isolated yeast glycolytic oscillators
van Niekerk, David D, Gustavsson, Anna-Karin, Mojica-Benavides, Martin, Adiels, Caroline B, Goksör, Mattias, Snoep, Jacky L
Published in Biochemical journal (31.01.2019)
Published in Biochemical journal (31.01.2019)
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Journal Article
From steady‐state to synchronized yeast glycolytic oscillations I: model construction
du Preez, Franco B., van Niekerk, David D., Kooi, Bob, Rohwer, Johann M., Snoep, Jacky L.
Published in The FEBS journal (01.08.2012)
Published in The FEBS journal (01.08.2012)
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Journal Article
Studying Glycolytic Oscillations in Individual Yeast Cells by Combining Fluorescence Microscopy with Microfluidics and Optical Tweezers
Gustavsson, Anna-Karin, Banaeiyan, Amin A, van Niekerk, David D, Snoep, Jacky L, Adiels, Caroline B, Goksör, Mattias
Published in Current protocols in cell biology (01.03.2019)
Published in Current protocols in cell biology (01.03.2019)
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Journal Article
A detailed kinetic model of glycolysis in P. falciparum-infected red blood cells for antimalarial drug target identification
van Niekerk, David D, du Toit, Francois, Green, Kathleen, Palm, Danie, Snoep, Jacky L
Published in The Journal of biological chemistry (28.07.2023)
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Published in The Journal of biological chemistry (28.07.2023)
Journal Article