Analysis of 567,758 randomized controlled trials published over 30 years reveals trends in phrases used to discuss results that do not reach statistical significance
Otte, Willem M, Vinkers, Christiaan H, Habets, Philippe C, van IJzendoorn, David G P, Tijdink, Joeri K
Published in PLoS biology (18.02.2022)
Published in PLoS biology (18.02.2022)
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Journal Article
Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas
van IJzendoorn, David G P, Szuhai, Karoly, Briaire-de Bruijn, Inge H, Kostine, Marie, Kuijjer, Marieke L, Bovée, Judith V M G
Published in PLoS computational biology (01.02.2019)
Published in PLoS computational biology (01.02.2019)
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Identification of stable housekeeping genes for induced pluripotent stem cells and -derived endothelial cells for drug testing
Ong, Sheena L. M., Baelde, Hans J., van IJzendoorn, David G. P., Bovée, Judith V. M. G., Szuhai, Karoly
Published in Scientific reports (28.09.2022)
Published in Scientific reports (28.09.2022)
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Fusion events lead to truncation of FOS in epithelioid hemangioma of bone
van IJzendoorn, David G. P., de Jong, Danielle, Romagosa, Cleofe, Picci, Piero, Benassi, Maria Serena, Gambarotti, Marco, Daugaard, Soeren, van de Sande, Michiel, Szuhai, Karoly, Bovée, Judith V. M. G.
Published in Genes chromosomes & cancer (01.09.2015)
Published in Genes chromosomes & cancer (01.09.2015)
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Journal Article
Telatinib Is an Effective Targeted Therapy for Pseudomyogenic Hemangioendothelioma
van IJzendoorn, David G P, Sleijfer, Stefan, Gelderblom, Hans, Eskens, Ferry A L M, van Leenders, Geert J L H, Szuhai, Karoly, Bovée, Judith V M G
Published in Clinical cancer research (01.06.2018)
Published in Clinical cancer research (01.06.2018)
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Journal Article
Functional analyses of a human vascular tumor FOS variant identify a novel degradation mechanism and a link to tumorigenesis
van IJzendoorn, David G.P., Forghany, Zary, Liebelt, Frauke, Vertegaal, Alfred C., Jochemsen, Aart G., Bovée, Judith V.M.G., Szuhai, Karoly, Baker, David A.
Published in The Journal of biological chemistry (29.12.2017)
Published in The Journal of biological chemistry (29.12.2017)
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Journal Article
Interactions in CSF1-Driven Tenosynovial Giant Cell Tumors
van IJzendoorn, David G P, Matusiak, Magdalena, Charville, Gregory W, Spierenburg, Geert, Varma, Sushama, Colburg, Deana R C, van de Sande, Michiel A J, van Langevelde, Kirsten, Mohler, David G, Ganjoo, Kristen N, Bui, Nam Q, Avedian, Raffi S, Bovée, Judith V M G, Steffner, Robert, West, Robert B, van de Rijn, Matt
Published in Clinical cancer research (14.11.2022)
Published in Clinical cancer research (14.11.2022)
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Spatially Segregated Macrophage Populations Predict Distinct Outcomes in Colon Cancer
Matusiak, Magdalena, Hickey, John W, van IJzendoorn, David G P, Lu, Guolan, Kidziński, Lukasz, Zhu, Shirley, Colburg, Deana R C, Luca, Bogdan, Phillips, Darci J, Brubaker, Sky W, Charville, Gregory W, Shen, Jeanne, Loh, Kyle M, Okwan-Duodu, Derick K, Nolan, Garry P, Newman, Aaron M, West, Robert B, van de Rijn, Matt
Published in Cancer discovery (02.08.2024)
Published in Cancer discovery (02.08.2024)
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Molecular Pathology of Bone Tumors
Lam, Suk Wai, van IJzendoorn, David G.P., Cleton-Jansen, Anne-Marie, Szuhai, Karoly, Bovée, Judith V.M.G.
Published in The Journal of molecular diagnostics : JMD (01.03.2019)
Published in The Journal of molecular diagnostics : JMD (01.03.2019)
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Journal Article
Psammomatoid Ossifying Fibroma Is Defined by SATB2 Rearrangement
Cleven, Arjen H G, Szuhai, Karoly, van IJzendoorn, David G P, Groen, Eline, Baelde, Hans, Schreuder, Willem H, Briaire-de Bruijn, Inge H, van der Meeren, Stijn W, Kleijwegt, Maarten C, Furth, Wouter R, Kroon, Herman M, Suurmeijer, Albert J H, Savci-Heijink, Dilara C, Baumhoer, Daniel, Bovée, Judith V M G
Published in Modern pathology (01.01.2023)
Published in Modern pathology (01.01.2023)
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PyPanda: a Python package for gene regulatory network reconstruction
van IJzendoorn, David G P, Glass, Kimberly, Quackenbush, John, Kuijjer, Marieke L
Published in Bioinformatics (Oxford, England) (01.11.2016)
Published in Bioinformatics (Oxford, England) (01.11.2016)
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Journal Article
Development and validation of a machine-learning algorithm to predict the relevance of scientific articles within the field of teratology
Habets, Philippe C., van IJzendoorn, David GP, Vinkers, Christiaan H., Härmark, Linda, de Vries, Loes C., Otte, Willem M.
Published in Reproductive toxicology (Elmsford, N.Y.) (01.10.2022)
Published in Reproductive toxicology (Elmsford, N.Y.) (01.10.2022)
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Sarcoma microenvironment cell states and ecosystems are associated with prognosis and predict response to immunotherapy
Subramanian, Ajay, Nemat-Gorgani, Neda, Ellis-Caleo, Timothy J, van IJzendoorn, David G P, Sears, Timothy J, Somani, Anish, Luca, Bogdan A, Zhou, Maggie Y, Bradic, Martina, Torres, Ileana A, Oladipo, Eniola, New, Christin, Kenney, Deborah E, Avedian, Raffi S, Steffner, Robert J, Binkley, Michael S, Mohler, David G, Tap, William D, D'Angelo, Sandra P, van de Rijn, Matt, Ganjoo, Kristen N, Bui, Nam Q, Charville, Gregory W, Newman, Aaron M, Moding, Everett J
Published in Nature cancer (01.03.2024)
Published in Nature cancer (01.03.2024)
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Vascular Tumor Recapitulated in Endothelial Cells from hiPSCs Engineered to Express the SERPINE1-FOSB Translocation
van IJzendoorn, David G.P., Salvatori, Daniela C.F., Cao, Xu, van den Hil, Francijna, Briaire-de Bruijn, Inge H., de Jong, Danielle, Mei, Hailiang, Mummery, Christine L., Szuhai, Karoly, Bovée, Judith V.M.G., Orlova, Valeria V.
Published in Cell reports. Medicine (22.12.2020)
Published in Cell reports. Medicine (22.12.2020)
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Single Cell Expression Analysis of Ductal Carcinoma in Situ Identifies Complex Genotypic-Phenotypic Relationships Altering Epithelial Composition
Qin, Xiaodi, Strand, Siri H, Lee, Marissa R, Saraswathibhatla, Aashrith, van IJzendoorn, David G P, Zhu, ChunFang, Vennam, Sujay, Varma, Sushama, Hall, Allison, Factor, Rachel E, King, Lorraine, Simpson, Lunden, Luo, Xiaoke, Colditz, Graham A, Jiang, Shu, Chaudhuri, Ovijit, Hwang, E Shelley, Marks, Jeffrey R, Owzar, Kouros, West, Robert B
Published in bioRxiv (25.09.2024)
Published in bioRxiv (25.09.2024)
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Journal Article
PyPanda: a Python Package for Gene Regulatory Network Reconstruction
David G P van IJzendoorn, Glass, Kimberly, Quackenbush, John, Kuijjer, Marieke L
Published in arXiv.org (12.07.2016)
Published in arXiv.org (12.07.2016)
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Journal Article
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks
Ben Guebila, Marouen, Wang, Tian, Lopes-Ramos, Camila M, Fanfani, Viola, Weighill, Des, Burkholz, Rebekka, Schlauch, Daniel, Paulson, Joseph N, Altenbuchinger, Michael, Shutta, Katherine H, Sonawane, Abhijeet R, Lim, James, Calderer, Genis, van IJzendoorn, David G P, Morgan, Daniel, Marin, Alessandro, Chen, Cho-Yi, Song, Qi, Saha, Enakshi, DeMeo, Dawn L, Padi, Megha, Platig, John, Kuijjer, Marieke L, Glass, Kimberly, Quackenbush, John
Published in Genome Biology (09.03.2023)
Published in Genome Biology (09.03.2023)
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