Clustering of known low and moderate risk alleles rather than a novel recessive high‐risk gene in non‐BRCA1/2 sib trios affected with breast cancer
Hilbers, Florentine S., Hof, Peter J., Meijers, Caro M., Mei, Hailiang, Michailidou, Kyriaki, Dennis, Joe, Hogervorst, Frans B. L., Nederlof, Petra M., Asperen, Christi J., Devilee, Peter
Published in International journal of cancer (15.11.2020)
Published in International journal of cancer (15.11.2020)
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Journal Article
Retrospective Validation of a Metagenomic Sequencing Protocol for Combined Detection of RNA and DNA Viruses Using Respiratory Samples from Pediatric Patients
van Boheemen, Sander, van Rijn, Anneloes L., Pappas, Nikos, Carbo, Ellen C., Vorderman, Ruben H.P., Sidorov, Igor, van `t Hof, Peter J., Mei, Hailiang, Claas, Eric C.J., Kroes, Aloys C.M., de Vries, Jutte J.C.
Published in The Journal of molecular diagnostics : JMD (01.02.2020)
Published in The Journal of molecular diagnostics : JMD (01.02.2020)
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Journal Article
Antisense Long Non-Coding RNAs Are Deregulated in Skin Tissue of Patients with Systemic Sclerosis
Messemaker, Tobias C., Chadli, Loubna, Cai, Guoshuai, Goelela, Varshna S., Boonstra, Maaike, Dorjée, Annemarie L., Andersen, Stefan N., Mikkers, Harald M.M., van ‘t Hof, Peter, Mei, Hailiang, Distler, Oliver, Draisma, Harmen H.M., Johnson, Michael E., Orzechowski, Nicole M., Simms, Robert W., Toes, Rene E.M., Aarbiou, Jamil, Huizinga, Tom W., Whitfield, Michael L., DeGroot, Jeroen, de Vries-Bouwstra, Jeska, Kurreeman, Fina
Published in Journal of investigative dermatology (01.04.2018)
Published in Journal of investigative dermatology (01.04.2018)
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A SNP panel for identification of DNA and RNA specimens
Yousefi, Soheil, Abbassi-Daloii, Tooba, Kraaijenbrink, Thirsa, Vermaat, Martijn, Mei, Hailiang, van 't Hof, Peter, van Iterson, Maarten, Zhernakova, Daria V, Claringbould, Annique, Franke, Lude, 't Hart, Leen M, Slieker, Roderick C, van der Heijden, Amber, de Knijff, Peter, 't Hoen, Peter A C
Published in BMC genomics (25.01.2018)
Published in BMC genomics (25.01.2018)
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Journal Article
Improving Phenotypic Prediction by Combining Genetic and Epigenetic Associations
Shah, Sonia, Bonder, Marc J., Marioni, Riccardo E., Zhu, Zhihong, McRae, Allan F., Zhernakova, Alexandra, Harris, Sarah E., Liewald, Dave, Henders, Anjali K., Mendelson, Michael M., Liu, Chunyu, Joehanes, Roby, Liang, Liming, Heijmans, Bastiaan T., ’t Hoen, Peter A.C., van Meurs, Joyce, Isaacs, Aaron, Jansen, Rick, Franke, Lude, Boomsma, Dorret I., Pool, René, van Dongen, Jenny, Hottenga, Jouke J., van Greevenbroek, Marleen M.J., Stehouwer, Coen D.A., van der Kallen, Carla J.H., Schalkwijk, Casper G., Wijmenga, Cisca, Zhernakova, Sasha, Tigchelaar, Ettje F., Slagboom, P. Eline, Beekman, Marian, Deelen, Joris, van Heemst, Diana, Veldink, Jan H., van den Berg, Leonard H., van Duijn, Cornelia M., Hofman, Bert A., Uitterlinden, André G., Jhamai, P. Mila, Verbiest, Michael, Suchiman, H. Eka D., Verkerk, Marijn, van der Breggen, Ruud, van Rooij, Jeroen, Lakenberg, Nico, Mei, Hailiang, van Iterson, Maarten, van Galen, Michiel, Bot, Jan, van ’t Hof, Peter, Deelen, Patrick, Nooren, Irene, Moed, Matthijs, Vermaat, Martijn, Zhernakova, Dasha V., Luijk, René, Bonder, Marc Jan, van Dijk, Freerk, Arindrarto, Wibowo, Kielbasa, Szymon M., Swertz, Morris A., van Zwet, Erik W., Levy, Daniel, Martin, Nicholas G., Starr, John M., Wijmenga, Cisca, Wray, Naomi R., Yang, Jian, Montgomery, Grant W., Franke, Lude, Deary, Ian J., Visscher, Peter M.
Published in American journal of human genetics (02.07.2015)
Published in American journal of human genetics (02.07.2015)
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Journal Article
DNA methylation as a mediator of the association between prenatal adversity and risk factors for metabolic disease in adulthood
Tobi, Elmar W, Slieker, Roderick C, Luijk, René, Dekkers, Koen F, Stein, Aryeh D, Xu, Kate M, Slagboom, P Eline, van Zwet, Erik W, Lumey, L H, Heijmans, Bastiaan T
Published in Science advances (01.01.2018)
Published in Science advances (01.01.2018)
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Journal Article
Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference
Hop, Paul J, Luijk, René, Daxinger, Lucia, van Iterson, Maarten, Dekkers, Koen F, Jansen, Rick, van Meurs, Joyce B J, 't Hoen, Peter A C, Ikram, M Arfan, van Greevenbroek, Marleen M J, Boomsma, Dorret I, Slagboom, P Eline, Veldink, Jan H, van Zwet, Erik W, Heijmans, Bastiaan T
Published in Genome Biology (28.08.2020)
Published in Genome Biology (28.08.2020)
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Journal Article
DNA methylation in peripheral tissues and left-handedness
Odintsova, Veronika V., Suderman, Matthew, Hagenbeek, Fiona A., Caramaschi, Doretta, Hottenga, Jouke-Jan, Pool, René, Dolan, Conor V., Ligthart, Lannie, van Beijsterveldt, Catharina E. M., Willemsen, Gonneke, de Geus, Eco J. C., Beck, Jeffrey J., Ehli, Erik A., Cuellar-Partida, Gabriel, Evans, David M., Medland, Sarah E., Relton, Caroline L., Boomsma, Dorret I., van Dongen, Jenny
Published in Scientific reports (04.04.2022)
Published in Scientific reports (04.04.2022)
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Journal Article
Refined mapping of autoimmune disease associated genetic variants with gene expression suggests an important role for non-coding RNAs
Ricaño-Ponce, Isis, Zhernakova, Daria V, Deelen, Patrick, Luo, Oscar, Li, Xingwang, Isaacs, Aaron, Karjalainen, Juha, Di Tommaso, Jennifer, Borek, Zuzanna Agnieszka, Zorro, Maria M, Gutierrez-Achury, Javier, Uitterlinden, Andre G, Hofman, Albert, van Meurs, Joyce, Netea, Mihai G, Jonkers, Iris H, Withoff, Sebo, van Duijn, Cornelia M, Li, Yang, Ruan, Yijun, Franke, Lude, Wijmenga, Cisca, Kumar, Vinod
Published in Journal of autoimmunity (01.04.2016)
Published in Journal of autoimmunity (01.04.2016)
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Journal Article
Correction for both common and rare cell types in blood is important to identify genes that correlate with age
Pellegrino-Coppola, Damiano, Claringbould, Annique, Stutvoet, Maartje, Boomsma, Dorret I, Ikram, M Arfan, Slagboom, P Eline, Westra, Harm-Jan, Franke, Lude
Published in BMC genomics (15.03.2021)
Published in BMC genomics (15.03.2021)
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Journal Article
Comprehensive evaluation of smoking exposures and their interactions on DNA methylation
Hoang, Thanh T., Lee, Yunsung, McCartney, Daniel L., Kersten, Elin T.G., Page, Christian M., Hulls, Paige M., Lee, Mikyeong, Walker, Rosie M., Breeze, Charles E., Bennett, Brian D., Burkholder, Adam B., Ward, James, Brantsæter, Anne Lise, Caspersen, Ida H., Motsinger-Reif, Alison A., Richards, Marie, White, Julie D., Zhao, Shanshan, Richmond, Rebecca C., Magnus, Maria C., Heijmans, Bastiaan, ’t Hoen, Peter, van Meurs, Joyce, Jansen, Rick, Franke, Lude, Boomsma, Dorret, Pool, René, van Dongen, Jenny, Hottenga, Jouke, van Greevenbroek, Marleen, Stehouwer, Coen, van der Kallen, Carla, Schalkwijk, Casper, Wijmenga, Cisca, Zhernakova, Sasha, Tigchelaar, Ettje, Slagboom, P. Eline, Beekman, Marian, Deelen, Joris, Van Heemst, Diana, Veldink, Jan, van den Berg, Leonard, van Duijn, Cornelia, Hofman, Bert, Isaacs, Aaron, Uitterlinden, André, Jhamai, P. Mila, Verbiest, Michael, Suchiman, H. Eka, Verkerk, Marijn, van der Breggen, Ruud, van Rooij, Jeroen, Lakenberg, Nico, Mei, Hailiang, van Iterson, Maarten, van Galen, Michiel, Bot, Jan, Zhernakova, Dasha, van ‘t Hof, Peter, Deelen, Patrick, Nooren, Irene, Moed, Matthijs, Vermaat, Martijn, Luijk, René, Bonder, Marc, van Dijk, Freerk, Arindrarto, Wibowo, Kielbasa, Szymon, Swertz, Morris, van Zwet, Erik, Koppelman, Gerard H., Evans, Kathryn L., Marioni, Riccardo E., Håberg, Siri E., London, Stephanie J.
Published in EBioMedicine (01.02.2024)
Published in EBioMedicine (01.02.2024)
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Journal Article
Phenotype prediction using biologically interpretable neural networks on multi-cohort multi-omics data
van Hilten, Arno, van Rooij, Jeroen, Ikram, M. Arfan, Niessen, Wiro J., van Meurs, Joyce. B. J., Roshchupkin, Gennady V.
Published in NPJ systems biology and applications (02.08.2024)
Published in NPJ systems biology and applications (02.08.2024)
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BIOPET: towards Scalable, Maintainable, User-friendly, Robust and Flexible NGS data analysis pipelines
van't Hof, Peter, Kielbasa, Szymon, Arindrarto, Wibowo, Laros, Jeroen, Bollen, Sander, Mei, Hailiang
Published in 2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID) (14.05.2017)
Published in 2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID) (14.05.2017)
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Conference Proceeding
Disease variants alter transcription factor levels and methylation of their binding sites
Bonder, Marc Jan, Ren Luijk, Zhernakova, Daria, Moed, Matthijs, Deelen, Patrick, Vermaat, Martijn, Maarten Van Iterson, Freerk Van Dijk, Michiel Van Galen, Bot, Jan, Slieker, Roderick C, P Mila Jhamai, Verbiest, Michael, H Eka D Suchiman, Verkerk, Marijn, Ruud Van Der Breggen, Jeroen Van Rooij, Lakenberg, Nico, Wibowo Arindrarto, Kielbasa, Szymon M, Jonkers, Iris, Van T Hof, Peter, Nooren, Irene, Beekman, Marian, Deelen, Joris, Diana Van Heemst, Zhernakova, Alexandra, Tigchelaar, Ettje F, Swertz, Morris A, Hofman, Albert, Andr G Uitterlinden, Ren Pool, Jenny Van Dongen, Hottenga, Jouke J, Coen Da Stehouwer, Carla Jh Van Der Kallen, Schalkwijk, Casper G, Leonard H Van Den Berg, Van Zwet, Erik W, Mei, Hailiang, Yang, Li, Lemire, Mathieu, Hudson, Thomas J, P Eline Slagboom, Wijmenga, Cisca, Veldink, Jan H, Marleen Mj Van Greevenbroek, Van Duijn, Cornelia M, Boomsma, Dorret I, Isaacs, Aaron, Jansen, Rick, Joyce Van Meurs, Hoen, Peter Ac T, Franke, Lude, Heijmans, Bastiaan T
Published in bioRxiv (01.12.2015)
Published in bioRxiv (01.12.2015)
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Paper
Hypothesis-free identification of modulators of genetic risk factors
Zhernakova, Daria, Deelen, Patrick, Vermaat, Martijn, Maarten Van Iterson, Michiel Van Galen, Wibowo Arindrarto, Van T Hof, Peter, Mei, Hailiang, Freerk Van Dijk, Harm-Jan Westra, Bonder, Marc Jan, Jeroen Van Rooij, Verkerk, Marijn, P Mila Jhamai, Moed, Matthijs, Kielbasa, Szymon M, Bot, Jan, Nooren, Irene, Ren Pool, Jenny Van Dongen, Hottenga, Jouke J, Coen Da Stehouwer, Carla Jh Van Der Kallen, Schalkwijk, Casper G, Zhernakova, Alexandra, Yang, Li, Tigchelaar, Ettje F, Beekman, Marian, Deelen, Joris, Diana Van Heemst, Leonard H Van Den Berg, Hofman, Albert, Andr G Uitterlinden, Marleen Mj Van Greevenbroek, Veldink, Jan H, Boomsma, Dorret I, Van Duijn, Cornelia M, Wijmenga, Cisca, P Eline Slagboom, Swertz, Morris A, Isaacs, Aaron, Van Meurs, Joyce Bj, Jansen, Rick, Heijmans, Bastiaan T, Hoen, Peter Ac T, Franke, Lude
Published in bioRxiv (30.11.2015)
Published in bioRxiv (30.11.2015)
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Paper
METAGENOMIC SEQUENCING FOR COMBINED DETECTION OF RNA AND DNA VIRUSES IN RESPIRATORY SAMPLES FROM PAEDIATRIC PATIENTS
Sander Van Boheemen, Van Rijn-Klink, Anneloes L, Pappas, Nikos, Carbo, Ellen C, Ruben Hp Vorderman, Peter J Van 't Hof, Mei, Hailiang, Claas, Eric Cj, Kroes, Aloys Cm, Jutte De Vries
Published in bioRxiv (10.12.2018)
Published in bioRxiv (10.12.2018)
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Paper