aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow
Pochon, Zoé, Bergfeldt, Nora, Kırdök, Emrah, Vicente, Mário, Naidoo, Thijessen, van der Valk, Tom, Altınışık, N. Ezgi, Krzewińska, Maja, Dalén, Love, Götherström, Anders, Mirabello, Claudio, Unneberg, Per, Oskolkov, Nikolay
Published in Genome Biology (23.10.2023)
Published in Genome Biology (23.10.2023)
Get full text
Journal Article
Genomic insights into the conservation status of the world’s last remaining Sumatran rhinoceros populations
von Seth, Johanna, Dussex, Nicolas, Díez-del-Molino, David, van der Valk, Tom, Kutschera, Verena E., Kierczak, Marcin, Steiner, Cynthia C., Liu, Shanlin, Gilbert, M. Thomas P., Sinding, Mikkel-Holger S., Prost, Stefan, Guschanski, Katerina, Nathan, Senthilvel K. S. S., Brace, Selina, Chan, Yvonne L., Wheat, Christopher W., Skoglund, Pontus, Ryder, Oliver A., Goossens, Benoit, Götherström, Anders, Dalén, Love
Published in Nature communications (26.04.2021)
Published in Nature communications (26.04.2021)
Get full text
Journal Article
GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species
Kutschera, Verena E, Kierczak, Marcin, van der Valk, Tom, von Seth, Johanna, Dussex, Nicolas, Lord, Edana, Dehasque, Marianne, Stanton, David W G, Khoonsari, Payam Emami, Nystedt, Björn, Dalén, Love, Díez-Del-Molino, David
Published in BMC bioinformatics (13.06.2022)
Published in BMC bioinformatics (13.06.2022)
Get full text
Journal Article
Population genomics of the critically endangered kākāpō
Dussex, Nicolas, van der Valk, Tom, Morales, Hernán E., Wheat, Christopher W., Díez-del-Molino, David, von Seth, Johanna, Foster, Yasmin, Kutschera, Verena E., Guschanski, Katerina, Rhie, Arang, Phillippy, Adam M., Korlach, Jonas, Howe, Kerstin, Chow, William, Pelan, Sarah, Mendes Damas, Joanna D., Lewin, Harris A., Hastie, Alex R., Formenti, Giulio, Fedrigo, Olivier, Guhlin, Joseph, Harrop, Thomas W.R., Le Lec, Marissa F., Dearden, Peter K., Haggerty, Leanne, Martin, Fergal J., Kodali, Vamsi, Thibaud-Nissen, Françoise, Iorns, David, Knapp, Michael, Gemmell, Neil J., Robertson, Fiona, Moorhouse, Ron, Digby, Andrew, Eason, Daryl, Vercoe, Deidre, Howard, Jason, Jarvis, Erich D., Robertson, Bruce C., Dalén, Love
Published in Cell genomics (13.10.2021)
Published in Cell genomics (13.10.2021)
Get full text
Journal Article
Population genomics of the muskox' resilience in the near absence of genetic variation
Pečnerová, Patrícia, Lord, Edana, Garcia‐Erill, Genís, Hanghøj, Kristian, Rasmussen, Malthe Sebro, Meisner, Jonas, Liu, Xiaodong, van der Valk, Tom, Santander, Cindy G., Quinn, Liam, Lin, Long, Liu, Shanlin, Carøe, Christian, Dalerum, Fredrik, Götherström, Anders, Måsviken, Johannes, Vartanyan, Sergey, Raundrup, Katrine, Al‐Chaer, Amal, Rasmussen, Linett, Hvilsom, Christina, Heide‐Jørgensen, Mads Peter, Sinding, Mikkel‐Holger S., Aastrup, Peter, Van Coeverden de Groot, Peter J., Schmidt, Niels Martin, Albrechtsen, Anders, Dalén, Love, Heller, Rasmus, Moltke, Ida, Siegismund, Hans Redlef
Published in Molecular ecology (01.01.2024)
Published in Molecular ecology (01.01.2024)
Get full text
Journal Article
Genomic trajectories of a near-extinction event in the Chatham Island black robin
von Seth, Johanna, van der Valk, Tom, Lord, Edana, Sigeman, Hanna, Olsen, Remi-André, Knapp, Michael, Kardailsky, Olga, Robertson, Fiona, Hale, Marie, Houston, Dave, Kennedy, Euan, Dalén, Love, Norén, Karin, Massaro, Melanie, Robertson, Bruce C, Dussex, Nicolas
Published in BMC genomics (10.11.2022)
Published in BMC genomics (10.11.2022)
Get full text
Journal Article
Moose genomes reveal past glacial demography and the origin of modern lineages
Dussex, Nicolas, Alberti, Federica, Heino, Matti T, Olsen, Remi-Andre, van der Valk, Tom, Ryman, Nils, Laikre, Linda, Ahlgren, Hans, Askeyev, Igor V, Askeyev, Oleg V, Shaymuratova, Dilyara N, Askeyev, Arthur O, Döppes, Doris, Friedrich, Ronny, Lindauer, Susanne, Rosendahl, Wilfried, Aspi, Jouni, Hofreiter, Michael, Lidén, Kerstin, Dalén, Love, Díez-Del-Molino, David
Published in BMC genomics (02.12.2020)
Published in BMC genomics (02.12.2020)
Get full text
Journal Article
Competitive mapping allows for the identification and exclusion of human DNA contamination in ancient faunal genomic datasets
Feuerborn, Tatiana R, Palkopoulou, Eleftheria, van der Valk, Tom, von Seth, Johanna, Munters, Arielle R, Pečnerová, Patrícia, Dehasque, Marianne, Ureña, Irene, Ersmark, Erik, Lagerholm, Vendela Kempe, Krzewińska, Maja, Rodríguez-Varela, Ricardo, Götherström, Anders, Dalén, Love, Díez-Del-Molino, David
Published in BMC genomics (30.11.2020)
Published in BMC genomics (30.11.2020)
Get full text
Journal Article
Significant loss of mitochondrial diversity within the last century due to extinction of peripheral populations in eastern gorillas
van der Valk, Tom, Sandoval-Castellanos, Edson, Caillaud, Damien, Ngobobo, Urbain, Binyinyi, Escobar, Nishuli, Radar, Stoinski, Tara, Gilissen, Emmanuel, Sonet, Gontran, Semal, Patrick, Kalthoff, Daniela C., Dalén, Love, Guschanski, Katerina
Published in Scientific reports (25.04.2018)
Published in Scientific reports (25.04.2018)
Get full text
Journal Article
Inbreeding and genetic load in a pair of sibling grouse species: Tetrastes sewersowi and T. bonasia
Song, Kai, van der Valk, Tom, Gao, Bin, Halvarsson, Peter, Fang, Yun, Xie, Wendong, Klaus, Siegfried, Han, Zhiming, Sun, Yue-Hua, Höglund, Jacob
Published in Avian research (2024)
Published in Avian research (2024)
Get full text
Journal Article
Adaptation to the High-Arctic island environment despite long-term reduced genetic variation in Svalbard reindeer
Dussex, Nicolas, Tørresen, Ole K., van der Valk, Tom, Le Moullec, Mathilde, Veiberg, Vebjørn, Tooming-Klunderud, Ave, Skage, Morten, Garmann-Aarhus, Benedicte, Wood, Jonathan, Rasmussen, Jacob A., Pedersen, Åshild Ø., Martin, Sarah L.F., Røed, Knut H., Jakobsen, Kjetill S., Dalén, Love, Hansen, Brage B., Martin, Michael D.
Published in iScience (20.10.2023)
Published in iScience (20.10.2023)
Get full text
Journal Article
Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome
van der Valk, Tom, Dehasque, Marianne, Chacón-Duque, J. Camilo, Oskolkov, Nikolay, Vartanyan, Sergey, Heintzman, Peter D., Pečnerová, Patrícia, Díez-del-Molino, David, Dalén, Love
Published in iScience (2022)
Published in iScience (2022)
Get full text
Journal Article
Genomic evidence for inbreeding depression and purging of deleterious genetic variation in Indian tigers
Khan, Anubhab, Patel, Kaushalkumar, Shukla, Harsh, Viswanathan, Ashwin, van der Valk, Tom, Borthakur, Udayan, Nigam, Parag, Zachariah, Arun, Jhala, Yadavendradev V., Kardos, Marty, Ramakrishnan, Uma
Published in Proceedings of the National Academy of Sciences - PNAS (07.12.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (07.12.2021)
Get full text
Journal Article