Fusion transcripts and their genomic breakpoints in polyadenylated and ribosomal RNA–minus RNA sequencing data
Hoogstrate, Youri, Komor, Malgorzata A, Böttcher, René, van Riet, Job, van de Werken, Harmen J G, van Lieshout, Stef, Hoffmann, Ralf, van den Broek, Evert, Bolijn, Anne S, Dits, Natasja, Sie, Daoud, van der Meer, David, Pepers, Floor, Bangma, Chris H, van Leenders, Geert J L H, Smid, Marcel, French, Pim J, Martens, John W M, van Workum, Wilbert, van der Spek, Peter J, Janssen, Bart, Caldenhoven, Eric, Rausch, Christian, de Jong, Mark, Stubbs, Andrew P, Meijer, Gerrit A, Fijneman, Remond J A, Jenster, Guido W
Published in Gigascience (09.12.2021)
Published in Gigascience (09.12.2021)
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Journal Article
GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes [version 2; peer review: 2 approved]
van den Broek, Evert, van Lieshout, Stef, Rausch, Christian, Ylstra, Bauke, van de Wiel, Mark A, Meijer, Gerrit A, Fijneman, Remond J.A, Abeln, Sanne
Published in F1000 research (01.01.2016)
Published in F1000 research (01.01.2016)
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Journal Article
Molecular pathways in post-colonoscopy versus detected colorectal cancers: results from a nested case-control study
Bogie, Roel M M, le Clercq, Chantal M C, Voorham, Quirinus J M, Cordes, Martijn, Sie, Daoud, Rausch, Christian, van den Broek, Evert, de Vries, Sara D J, van Grieken, Nicole C T, Riedl, Robert G, Sastrowijoto, Prapto, Speel, Ernst-Jan, Vos, Rein, Winkens, Bjorn, van Engeland, Manon, Ylstra, Bauke, Meijer, Gerrit A, Masclee, Ad A M, Carvalho, Beatriz
Published in British journal of cancer (01.04.2022)
Published in British journal of cancer (01.04.2022)
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Journal Article
High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer
van den Broek, Evert, Dijkstra, Maurits J J, Krijgsman, Oscar, Sie, Daoud, Haan, Josien C, Traets, Joleen J H, van de Wiel, Mark A, Nagtegaal, Iris D, Punt, Cornelis J A, Carvalho, Beatriz, Ylstra, Bauke, Abeln, Sanne, Meijer, Gerrit A, Fijneman, Remond J A
Published in PloS one (16.09.2015)
Published in PloS one (16.09.2015)
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Prognostic value of microvessel density in stage II and III colon cancer patients: a retrospective cohort study
den Uil, Sjoerd H, van den Broek, Evert, Coupé, Veerle M H, Vellinga, Thomas T, Delis-van Diemen, Pien M, Bril, Herman, Belt, Eric J Th, Kranenburg, Onno, Stockmann, Hein B A C, Belien, Jeroen A M, Meijer, Gerrit A, Fijneman, Remond J A
Published in BMC gastroenterology (16.08.2019)
Published in BMC gastroenterology (16.08.2019)
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Epidermal Growth Factor Receptor-Targeted Fluorescence Molecular Imaging for Postoperative Lymph Node Assessment in Patients with Oral Cancer
Vonk, Jasper, de Wit, Jaron G, Voskuil, Floris J, Tang, Yang Hang, Hooghiemstra, Wouter T R, Linssen, Matthijs D, van den Broek, Evert, Doff, Jan J, de Visscher, Sebastiaan A H J, Schepman, Kees-Pieter, van der Vegt, Bert, van Dam, Gooitzen M, Witjes, Max J H
Published in Journal of Nuclear Medicine (01.05.2022)
Published in Journal of Nuclear Medicine (01.05.2022)
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Journal Article
Consensus molecular subtype classification of colorectal adenomas
Komor, Malgorzata A, Bosch, Linda JW, Bounova, Gergana, Bolijn, Anne S, Delis‐van Diemen, Pien M, Rausch, Christian, Hoogstrate, Youri, Stubbs, Andrew P, de Jong, Mark, Jenster, Guido, van Grieken, Nicole CT, Carvalho, Beatriz, Wessels, Lodewyk FA, Jimenez, Connie R, Fijneman, Remond JA, Meijer, Gerrit A, Dits, Natasja, Bottcher, Rene, Hiemstra, Annemieke C, Ylstra, Bauke, Sie, Daoud, van den Broek, Evert, van der Meer, David, Pepers, Floor, Caldenhoven, Eric, Janssen, Bart, van Workum, Wilbert, van Lieshout, Stef, Bangma, Chris H., van Leenders, Geert, van de Werken, Harmen
Published in The Journal of pathology (01.11.2018)
Published in The Journal of pathology (01.11.2018)
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Journal Article
Molecular characterization of colorectal adenomas reveals POFUT1 as a candidate driver of tumor progression
Komor, Malgorzata A., Wit, Meike, Berg, Jose, Martens de Kemp, Sanne R., Delis‐van Diemen, Pien M., Bolijn, Anne S., Tijssen, Marianne, Schelfhorst, Tim, Piersma, Sander R., Chiasserini, Davide, Sanders, Joyce, Rausch, Christian, Hoogstrate, Youri, Stubbs, Andrew P., Jong, Mark, Jenster, Guido, Carvalho, Beatriz, Meijer, Gerrit A., Jimenez, Connie R., Fijneman, Remond J.A.
Published in International journal of cancer (01.04.2020)
Published in International journal of cancer (01.04.2020)
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Journal Article
Abstract A07: Detection of structural variants and recurrent breakpoint genes in colorectal adenoma-to-carcinoma progression
Broek, Evert van den, Dijkstra, Maurits J.J., Voorham, Quirinus J.M., Carvalho, Beatriz, Wiel, Mark A. van de, Abeln, Sanne, Meijer, Gerrit A., Fijneman, Remond J.A.
Published in Cancer research (Chicago, Ill.) (01.02.2017)
Published in Cancer research (Chicago, Ill.) (01.02.2017)
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Abstract 1738: Characterization of structural variants within MACROD2 in the pathogenesis of colorectal cancer
Fijneman, Remond J A, Mekkes, Nienke, Broek, Evert van den, Stringer, Bas, Glas, Roel A., Komor, Malgorzata A., Rausch, Christian, Lieshout, Stef van, Cuppen, Edwin, Smith, Melissa L., Sebra, Robert P., Rowell, William J., Ashby, Meredith, Carvalho, Beatriz, Heringa, Jaap, Meijer, Gerrit A., Abeln, Sanne
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Loss of KCNQ1 expression in stage II and stage III colon cancer is a strong prognostic factor for disease recurrence
den Uil, Sjoerd H, Coupé, Veerle M H, Linnekamp, Janneke F, van den Broek, Evert, Goos, Jeroen A C M, Delis-van Diemen, Pien M, Belt, Eric J Th, van Grieken, Nicole C T, Scott, Patricia M, Vermeulen, Louis, Medema, Jan Paul, Bril, Herman, Stockmann, Hein B A C, Cormier, Robert T, Meijer, Gerrit A, Fijneman, Remond J A
Published in British journal of cancer (06.12.2016)
Published in British journal of cancer (06.12.2016)
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Journal Article
MACROD2 expression predicts response to 5-FU-based chemotherapy in stage III colon cancer
van den Broek, Evert, den Uil, Sjoerd H, Coupé, Veerle M H, Delis-van Diemen, Pien M, Bolijn, Anne S, Bril, Herman, Stockmann, Hein B A C, van Grieken, Nicole C T, Meijer, Gerrit A, Fijneman, Remond J A
Published in Oncotarget (29.06.2018)
Published in Oncotarget (29.06.2018)
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Journal Article
Abstract 3125: KCNQ1 expression is a strong prognostic biomarker for disease recurrence in stage II and III colon cancer
den Uil, Sjoerd H., Coupe, Veerle M.H., Linnekamp, Janneke F., van den Broek, Evert, Goos, Jeroen A.C.M., Delis-van Diemen, Pien M., Belt, Eric J.T., van Grieken, Nicole C.T., Scott, Patricia M., Vermeulen, Louis, Medema, Jan Paul, Bril, Herman, Stockmann, Hein B.A.C., Cormier, Robert T., Meijer, Gerrit A., Fijneman, Remond J.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Journal Article
Genomic profiling of stage II and III colon cancers reveals APC mutations to be associated with survival in stage III colon cancer patients
van den Broek, Evert, Krijgsman, Oscar, Sie, Daoud, Tijssen, Marianne, Mongera, Sandra, van de Wiel, Mark A, Belt, Eric J Th, den Uil, Sjoerd H, Bril, Herman, Stockmann, Hein B A C, Ylstra, Bauke, Carvalho, Beatriz, Meijer, Gerrit A, Fijneman, Remond J A
Published in Oncotarget (08.11.2016)
Published in Oncotarget (08.11.2016)
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Journal Article
Reduced rate of copy number aberrations in mucinous colorectal carcinoma
Hugen, Niek, Simmer, Femke, Mekenkamp, Leonie J M, Koopman, Miriam, van den Broek, Evert, de Wilt, Johannes H W, Punt, Cornelis J A, Ylstra, Bauke, Meijer, Gerrit A, Nagtegaal, Iris D
Published in Oncotarget (22.09.2015)
Published in Oncotarget (22.09.2015)
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Su1998 Genomic Profile and Clinicopathological Analysis of Postcolonoscopy Colorectal Cancers: A Pilot Study
de Vries, Sara, le Clercq, Chantal, van Grieken, Nicole, Heideman, Daniëlle, van Engeland, Manon, van den Broek, Evert, Cordes, Martijn, Ylstra, Bauke, Nagtegaal, Iris D, Punt, Cornelis J, Meijer, Gerrit A, Masclee, Ad, Sanduleanu, Silvia, Carvalho, Beatriz
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2015)
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2015)
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Journal Article
GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes
van den Broek, Evert, van Lieshout, Stef, Rausch, Christian, Ylstra, Bauke, van de Wiel, Mark A, Meijer, Gerrit A, Fijneman, Remond J A, Abeln, Sanne
Published in F1000 research (2016)
Published in F1000 research (2016)
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Journal Article
PERSONALIZED TUMOR MARKERS
MEIJER, Gerrit Albert, VAN DEN BROEK, Evert, FIJNEMAN, Remondus Johannes Adriaan, HERINGA, Jakob, ABELN, Sanne, LAKBIR, Soufyan
Year of Publication 04.10.2023
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Year of Publication 04.10.2023
Patent
PERSONALIZED TUMOR MARKERS
MEIJER, Gerrit Albert, VAN DEN BROEK, Evert, FIJNEMAN, Remondus Johannes Adriaan, HERINGA, Jakob, ABELN, Sanne, LAKBIR, Soufyan
Year of Publication 02.06.2022
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Year of Publication 02.06.2022
Patent