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Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease
Piwecka, Monika, Rajewsky, Nikolaus, Rybak-Wolf, Agnieszka
Published in Nature reviews. Neurology (01.06.2023)
Published in Nature reviews. Neurology (01.06.2023)
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Dissecting mammalian reproduction with spatial transcriptomics
Zhang, Xin, Cao, Qiqi, Rajachandran, Shreya, Grow, Edward J, Evans, Melanie, Chen, Haiqi
Published in Human reproduction update (02.11.2023)
Published in Human reproduction update (02.11.2023)
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Abstract 6612: Deep and scalable spatial transcriptomics for oncology research
Foley, Joseph W., Teo, Wei K., Tay, Joshua K.
Published in Cancer research (Chicago, Ill.) (21.04.2025)
Published in Cancer research (Chicago, Ill.) (21.04.2025)
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OP0128 SPATIAL TRANSCRIPTOMICS IMPLICATES GLANDULAR CELL INVOLVEMENT IN PATHOPHYSIOLOGY OF SJÖGREN’S DISEASE
Yao, S., Wilbrink, R., Czarnota, P., Marlin, M. C., Khatri, B., Stolarczyk, A. M., Pritchett Frazee, C., Li, C., Wright, K., Tessneer, K. L., James, J. A., Scofield, R. H., Adrianto, I., Rasmussen, A., Guthridge, J. M., Farris, A. D., Lessard, C. J.
Published in Annals of the rheumatic diseases (01.06.2024)
Published in Annals of the rheumatic diseases (01.06.2024)
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Spatial Transcriptomics Resolve an Emphysema-Specific Lymphoid Follicle B Cell Signature in Chronic Obstructive Pulmonary Disease
Rojas-Quintero, Joselyn, Ochsner, Scott A., New, Felicia, Divakar, Prajan, Yang, Chen Xi, Wu, Tianshi David, Robinson, Jerid, Chandrashekar, Darshan Shimoga, Banovich, Nicholas E., Rosas, Ivan O., Sauler, Maor, Kheradmand, Farrah, Gaggar, Amit, Margaroli, Camilla, San Jose Estepar, Raul, McKenna, Neil J., Polverino, Francesca
Published in American journal of respiratory and critical care medicine (01.01.2024)
Published in American journal of respiratory and critical care medicine (01.01.2024)
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Leveraging Spatial Transcriptomics to Decode Craniofacial Development
Piña, Jeremie Oliver, Raju, Resmi, Myo, Aye Chan, Stipano, Evan, Wright, Malachi, D’Souza, Rena N.
Published in Genes (03.05.2025)
Published in Genes (03.05.2025)
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Zika virus co-opts microRNA networks to persist in placental niches detected by spatial transcriptomics
Barrozo, Enrico R., Seferovic, Maxim D., Hamilton, Mark P., Moorshead, David N., Jochum, Michael D., Do, Trang, O’Neil, Derek S., Suter, Melissa A., Aagaard, Kjersti M.
Published in American journal of obstetrics and gynecology (01.02.2024)
Published in American journal of obstetrics and gynecology (01.02.2024)
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Spatial Transcriptomics Resolve an Emphysema-specific Lymphoid Follicle B Cell Signature in COPD
Rojas-Quintero, Joselyn, Ochsner, Scott A, New, Felicia, Divakar, Prajan, Yang, Chen Xi, Wu, Tianshi David, Robinson, Jerid, Shimoga Chandrashekar, Darshan, Banovich, Nicholas E, Rosas, Ivan O., Sauler, Maor, Kheradmand, Farrah, Gaggar, Amit, Margaroli, Camilla, San Jose Estepar, Raul, McKenna, Neil J, Polverino, Francesca
Published in American journal of respiratory and critical care medicine (08.12.2023)
Published in American journal of respiratory and critical care medicine (08.12.2023)
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Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues
Berglund, Emelie, Saarenpää, Sami, Jemt, Anders, Gruselius, Joel, Larsson, Ludvig, Bergenstråhle, Ludvig, Lundeberg, Joakim, Giacomello, Stefania
Published in BMC genomics (15.04.2020)
Published in BMC genomics (15.04.2020)
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EPCO-44. SPATIAL TRANSCRIPTOMICS ENABLES STATISTICAL MODELING OF SEX DIFFERENCE IN GENE CO-EXPRESSION NETWORK AND IMMUNE LANDSCAPE OF GLIOBLASTOMA
Hao, Yue, Baker, Angela, Reid, George, Luo, Jingqin, Hilbush, Brian, Otero, Marcos, Streck, Christopher, Fink, Karen L, Snipes, George J, Mickey, Bruce E, Sloan, Andrew E, Barnholtz-Sloan, Jill S, Berens, Michael E
Published in Neuro-oncology (Charlottesville, Va.) (11.11.2024)
Published in Neuro-oncology (Charlottesville, Va.) (11.11.2024)
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Long‐term neuropathological effects of amyloid‐β immunization revealed by spatial transcriptomics
van Olst, Lynn, Simonton, Brooke, Ramakrishnan, Abhirami, Piehl, Natalie, Teregulova, Victoria, Norman, Jeanette, Nicoll, James AR, Boche, Delphine, Gate, David
Published in Alzheimer's & dementia (01.12.2023)
Published in Alzheimer's & dementia (01.12.2023)
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Re‐exploring tissue regeneration by novel spatial transcriptomics technologies
Wei, Xiaoyu, Li, Hanbo, Du, Jiaxin, Zeng, Xiaoqi, Xu, Xun, Chen, Liang, Gu, Ying
Published in Clinical and translational medicine (01.11.2022)
Published in Clinical and translational medicine (01.11.2022)
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Abstract PR012: Spatial transcriptomics reveals racial disparities in the transcriptional substructure of triple negative breast cancer
Bassiouni, Rania, Idowu, Michael O., Gibbs, Lee D., Robila, Valentina, Grizzard, Pamela J., Webb, Michelle G., Song, Jiarong, Noriega, Ashley, Craig, David W., Carpten, John D.
Published in Cancer epidemiology, biomarkers & prevention (01.01.2023)
Published in Cancer epidemiology, biomarkers & prevention (01.01.2023)
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Spatiotemporal genomic profiling of intestinal metaplasia reveals clonal dynamics of gastric cancer progression
Huang, Kie Kyon, Ma, Haoran, Chong, Roxanne Hui Heng, Uchihara, Tomoyuki, Lian, Benedict Shi Xiang, Zhu, Feng, Sheng, Taotao, Srivastava, Supriya, Tay, Su Ting, Sundar, Raghav, Tan, Angie Lay Keng, Ong, Xuewen, Lee, Minghui, Ho, Shamaine Wei Ting, Lesluyes, Tom, Ashktorab, Hassan, Smoot, Duane, Van Loo, Peter, Chua, Joy Shijia, Ramnarayanan, Kalpana, Lau, Louis Ho Shing, Gotoda, Takuji, Kim, Hyun Soo, Ang, Tiing Leong, Khor, Christopher, Lee, Jonathan Wei Jie, Tsao, Stephen Kin Kwok, Yang, Wei Lyn, Teh, Ming, Chung, Hyunsoo, So, Jimmy Bok Yan, Yeoh, Khay Guan, Tan, Patrick
Published in Cancer cell (11.12.2023)
Published in Cancer cell (11.12.2023)
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Spatial RNA Sequencing Identifies Robust Markers of Vulnerable and Resistant Human Midbrain Dopamine Neurons and Their Expression in Parkinson’s Disease
Aguila, Julio, Cheng, Shangli, Kee, Nigel, Cao, Ming, Wang, Menghan, Deng, Qiaolin, Hedlund, Eva
Published in Frontiers in molecular neuroscience (08.07.2021)
Published in Frontiers in molecular neuroscience (08.07.2021)
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Widespread and cell-type-specific transcriptomic reorganization following mild traumatic brain injury
Swaro, Aditya, Bristow, Brianna N., Anwer, Mehwish, Zhang, Angela A., Kraus, Larissa, Gandhi, Riya K., Erwin, Sarah R., Stach, Tara R., Sullivan, Kaitlin E., Fan, Jianjia, Cheng, Wai Hang, Wellington, Cheryl L., Cembrowski, Mark S.
Published in Cell reports (Cambridge) (24.06.2025)
Published in Cell reports (Cambridge) (24.06.2025)
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Clinical challenges of tissue preparation for spatial transcriptome
Liu, Xiaoxia, Jiang, Yujia, Song, Dongli, Zhang, Linlin, Xu, Guang, Hou, Rui, Zhang, Yong, Chen, Jian, Cheng, Yunfeng, Liu, Longqi, Xu, Xun, Chen, Gang, Wu, Duojiao, Chen, Tianxiang, Chen, Ao, Wang, Xiangdong
Published in Clinical and translational medicine (01.01.2022)
Published in Clinical and translational medicine (01.01.2022)
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