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scCOSMIX: A Mixed‐Effects Framework for Differential Coexpression and Transcriptional Interactions Modeling in Single‐Cell RNA‐Seq
Bussing, Anderson, Marra, Giampiero, Fan, Daping, Shinohara, Russell, Tu, Danni, Ho, Yen‐Yi
Published in Statistics in medicine (01.08.2025)
Published in Statistics in medicine (01.08.2025)
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Single cell RNA-seq reveals profound transcriptional similarity between Barrett’s oesophagus and oesophageal submucosal glands
Owen, Richard Peter, White, Michael Joseph, Severson, David Tyler, Braden, Barbara, Bailey, Adam, Goldin, Robert, Wang, Lai Mun, Ruiz-Puig, Carlos, Maynard, Nicholas David, Green, Angie, Piazza, Paolo, Buck, David, Middleton, Mark Ross, Ponting, Chris Paul, Schuster-Böckler, Benjamin, Lu, Xin
Published in Nature communications (15.10.2018)
Published in Nature communications (15.10.2018)
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Single‐cell RNA‐seq reveals altered NK cell subsets and reduced levels of cytotoxic molecules in patients with ankylosing spondylitis
Ren, Conglin, Li, Mingshuang, Zheng, Yang, Cai, Bingbing, Du, Weibin, Zhang, Helou, Wu, Fengqing, Tong, Mengsha, Lin, Fu, Wang, Jinfu, Quan, Renfu
Published in Journal of cellular and molecular medicine (01.02.2022)
Published in Journal of cellular and molecular medicine (01.02.2022)
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Single-Cell RNA-seq of Human Myeloid-Derived Suppressor Cells in Late Sepsis Reveals Multiple Subsets With Unique Transcriptional Responses: A Pilot Study
Darden, Dijoia B, Bacher, Rhonda, Brusko, Maigan A, Knight, Parker, Hawkins, Russell B, Cox, Michael C, Dirain, Marvin L, Ungaro, Ricardo, Nacionales, Dina C, Rincon, Jaimar C, Gauthier, Marie-Pierre L, Kladde, Michael, Bihorac, Azra, Brusko, Todd M, Moore, Frederick A, Brakenridge, Scott C, Mohr, Alicia M, Moldawer, Lyle L, Efron, Philip A
Published in Shock (Augusta, Ga.) (01.05.2021)
Published in Shock (Augusta, Ga.) (01.05.2021)
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Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage
Poirion, Olivier, Zhu, Xun, Ching, Travers, Garmire, Lana X.
Published in Nature communications (20.11.2018)
Published in Nature communications (20.11.2018)
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OP0109 SINGLE-CELL RNA-SEQ REVEALS DIFFERENCES IN METABOLIC PATHWAYS OF MYELOID CELLS IN THE PROGRESSION OF SLE
Bylinska, A., Smith, M., Thomas, K., Guthridge, C., Slight-Webb, S., Macwana, S., James, J. A., Guthridge, J.
Published in Annals of the rheumatic diseases (01.06.2023)
Published in Annals of the rheumatic diseases (01.06.2023)
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Exploring the shared molecular mechanisms between systemic lupus erythematosus and primary Sjögren’s syndrome based on integrated bioinformatics and single-cell RNA-seq analysis
Cui, Yanling, Zhang, Huina, Wang, Zhen, Gong, Bangdong, Al-Ward, Hisham, Deng, Yaxuan, Fan, Orion, Wang, Junbang, Zhu, Wenmin, Sun, Yi Eve
Published in Frontiers in immunology (08.08.2023)
Published in Frontiers in immunology (08.08.2023)
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Pathogenic Significance of the DDX41 p.R525H Variant Revealed By Single-Cell RNA-Seq Analysis
Matsui, Hirotaka, Koizumi, Minori, Kudo, Rei, Nagamachi, Akiko, Ajiro, Masahiko, Harada, Hironori, Harada, Yuka, Shichino, Shigeyuki, Yoshimi, Akihide
Published in Blood (05.11.2024)
Published in Blood (05.11.2024)
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Systematic immune cell dysregulation and molecular subtypes revealed by single-cell RNA-seq of subjects with type 1 diabetes
Honardoost, Mohammad Amin, Adinatha, Andreas, Schmidt, Florian, Ranjan, Bobby, Ghaeidamini, Maryam, Arul Rayan, Nirmala, Gek Liang Lim, Michelle, Joanito, Ignasius, Xiao Xuan Lin, Quy, Rajagopalan, Deepa, Qi Mok, Shi, Hwang, You Yi, Larbi, Anis, Khor, Chiea Chuen, Foo, Roger, Boehm, Bernhard Otto, Prabhakar, Shyam
Published in Genome medicine (27.03.2024)
Published in Genome medicine (27.03.2024)
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scReClassify: post hoc cell type classification of single-cell rNA-seq data
Kim, Taiyun, Lo, Kitty, Geddes, Thomas A., Kim, Hani Jieun, Yang, Jean Yee Hwa, Yang, Pengyi
Published in BMC genomics (24.12.2019)
Published in BMC genomics (24.12.2019)
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Single-cell RNA-seq analysis of human CSF microglia and myeloid cells in neuroinflammation
Esaulova, Ekaterina, Cantoni, Claudia, Shchukina, Irina, Zaitsev, Konstantin, Bucelli, Robert C., Wu, Gregory F., Artyomov, Maxim N., Cross, Anne H., Edelson, Brian T.
Published in Neurology : neuroimmunology & neuroinflammation (01.07.2020)
Published in Neurology : neuroimmunology & neuroinflammation (01.07.2020)
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A Novel Single Cell RNA-seq Analysis of Non-Myeloid Circulating Cells in Late Sepsis
Darden, Dijoia B., Dong, Xiaoru, Brusko, Maigan A., Kelly, Lauren, Fenner, Brittany, Rincon, Jaimar C., Dirain, Marvin L., Ungaro, Ricardo, Nacionales, Dina C., Gauthier, Marie, Kladde, Michael, Brusko, Todd M., Bihorac, Azra, Moore, Frederick A., Loftus, Tyler, Bacher, Rhonda, Moldawer, Lyle L., Mohr, Alicia M., Efron, Philip A.
Published in Frontiers in immunology (16.08.2021)
Published in Frontiers in immunology (16.08.2021)
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V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single-cell RNA-seq data
Lawlor, Nathan, Marquez, Eladio J, Lee, Donghyung, Ucar, Duygu
Published in Bioinformatics (01.06.2020)
Published in Bioinformatics (01.06.2020)
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